RNA–Protein interactions for RNA: ENST00000623007.3

LDB3-208, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,664 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-208ENST00000623007 NYXQ9GZU5 481 aa19.63■□□□□ 0.73
LDB3-208ENST00000623007 GREM2Q9H772 168 aa19.63■□□□□ 0.73
LDB3-208ENST00000623007 PALD1Q9ULE6 856 aa19.63■□□□□ 0.73
LDB3-208ENST00000623007 SCN7AQ01118 1682 aa19.62■□□□□ 0.73
LDB3-208ENST00000623007 FRAT2O75474 233 aaPredicted RBP19.62■□□□□ 0.73
LDB3-208ENST00000623007 SSFA2P28290 1259 aa19.62■□□□□ 0.73
LDB3-208ENST00000623007 TIMM10P62072 90 aa19.62■□□□□ 0.73
LDB3-208ENST00000623007 CUL4AQ13619 759 aa19.62■□□□□ 0.73
LDB3-208ENST00000623007 TTF1Q15361 905 aaPredicted RBP19.62■□□□□ 0.73
LDB3-208ENST00000623007 ATP2B3Q16720 1220 aa19.62■□□□□ 0.73
LDB3-208ENST00000623007 SUSD4Q5VX71 490 aa19.62■□□□□ 0.73
LDB3-208ENST00000623007 IL25Q9H293 177 aa19.62■□□□□ 0.73
LDB3-208ENST00000623007 U3KPZ7 1027 aaPredicted RBP19.62■□□□□ 0.73
LDB3-208ENST00000623007 GOLGA6L22H0YM25 854 aa19.62■□□□□ 0.73
LDB3-208ENST00000623007 PDE8BO95263 885 aa19.62■□□□□ 0.73
LDB3-208ENST00000623007 VPS53Q5VIR6 699 aa19.62■□□□□ 0.73
LDB3-208ENST00000623007 ZSCAN25Q6NSZ9 544 aa19.62■□□□□ 0.73
LDB3-208ENST00000623007 CLEC17AQ6ZS10 378 aa19.62■□□□□ 0.73
LDB3-208ENST00000623007 XAGE2Q96GT9 111 aa19.62■□□□□ 0.73
LDB3-208ENST00000623007 ZSCAN31Q96LW9 406 aaPredicted RBP19.62■□□□□ 0.73
LDB3-208ENST00000623007 PUS3Q9BZE2 481 aaKnown RBP19.62■□□□□ 0.73
LDB3-208ENST00000623007 LY75O60449 1722 aa19.61■□□□□ 0.73
LDB3-208ENST00000623007 NTSR2O95665 410 aa19.61■□□□□ 0.73
LDB3-208ENST00000623007 UQCRFS1P1P0C7P4 283 aa19.61■□□□□ 0.73
LDB3-208ENST00000623007 ANKRD1Q15327 319 aa19.61■□□□□ 0.73
LDB3-208ENST00000623007 USPL1Q5W0Q7 1092 aa19.61■□□□□ 0.73
LDB3-208ENST00000623007 LINC00116Q8NCU8 138 aa19.61■□□□□ 0.73
LDB3-208ENST00000623007 TMX3Q96JJ7 454 aa19.61■□□□□ 0.73
LDB3-208ENST00000623007 FAM227BQ96M60 508 aa19.61■□□□□ 0.73
LDB3-208ENST00000623007 CDC5LQ99459 802 aaKnown RBP19.61■□□□□ 0.73
LDB3-208ENST00000623007 MPHOSPH8Q99549 860 aa19.61■□□□□ 0.73
LDB3-208ENST00000623007 RBM8AQ9Y5S9 174 aaKnown RBP19.61■□□□□ 0.73
LDB3-208ENST00000623007 CYP46A1Q9Y6A2 500 aa19.61■□□□□ 0.73
LDB3-208ENST00000623007 RIC1Q4ADV7 1423 aa19.6■□□□□ 0.73
LDB3-208ENST00000623007 MCM4P33991 863 aa19.6■□□□□ 0.73
LDB3-208ENST00000623007 IGHMBP2P38935 993 aaKnown RBP19.6■□□□□ 0.73
LDB3-208ENST00000623007 PUM3Q15397 648 aaKnown RBP19.6■□□□□ 0.73
LDB3-208ENST00000623007 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.6■□□□□ 0.73
LDB3-208ENST00000623007 NARFQ9UHQ1 456 aa19.6■□□□□ 0.73
LDB3-208ENST00000623007 A0A0D9SFI3 127 aa19.59■□□□□ 0.73
LDB3-208ENST00000623007 LPIN2Q92539 896 aa19.59■□□□□ 0.73
LDB3-208ENST00000623007 ALDH8A1Q9H2A2 487 aaPredicted RBP19.59■□□□□ 0.73
LDB3-208ENST00000623007 ZSWIM6Q9HCJ5 1215 aa19.59■□□□□ 0.73
LDB3-208ENST00000623007 SH2B1Q9NRF2 756 aaPredicted RBP19.59■□□□□ 0.73
LDB3-208ENST00000623007 CCNL1Q9UK58 526 aaPredicted RBP19.59■□□□□ 0.73
LDB3-208ENST00000623007 CREB3L3Q68CJ9 461 aa19.59■□□□□ 0.73
LDB3-208ENST00000623007 VGLL2Q8N8G2 317 aa19.59■□□□□ 0.73
LDB3-208ENST00000623007 DSCC1Q9BVC3 393 aa19.59■□□□□ 0.73
LDB3-208ENST00000623007 LIMCH1Q9UPQ0 1083 aa19.59■□□□□ 0.73
LDB3-208ENST00000623007 RTCBQ9Y3I0 505 aaKnown RBP19.59■□□□□ 0.73
LDB3-208ENST00000623007 DDX60Q8IY21 1712 aaKnown RBP19.58■□□□□ 0.73
LDB3-208ENST00000623007 SBF2Q86WG5 1849 aa19.58■□□□□ 0.73
LDB3-208ENST00000623007 ARAP2Q8WZ64 1704 aa19.58■□□□□ 0.72
LDB3-208ENST00000623007 GOLIM4O00461 696 aa19.58■□□□□ 0.72
LDB3-208ENST00000623007 RNF113AO15541 343 aaKnown RBP19.58■□□□□ 0.72
LDB3-208ENST00000623007 ZPR1O75312 459 aa19.58■□□□□ 0.72
LDB3-208ENST00000623007 TAF5LO75529 589 aa19.58■□□□□ 0.72
LDB3-208ENST00000623007 SLC5A1P13866 664 aa19.58■□□□□ 0.72
LDB3-208ENST00000623007 ADRA2BP18089 450 aa19.58■□□□□ 0.72
LDB3-208ENST00000623007 PTH1RQ03431 593 aa19.58■□□□□ 0.72
LDB3-208ENST00000623007 PRPF40BQ6NWY9 871 aaKnown RBP19.58■□□□□ 0.72
LDB3-208ENST00000623007 TTC14Q96N46 770 aa19.58■□□□□ 0.72
LDB3-208ENST00000623007 BCL11BQ9C0K0 894 aaPredicted RBP19.58■□□□□ 0.72
LDB3-208ENST00000623007 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.58■□□□□ 0.72
LDB3-208ENST00000623007 HMGB1P09429 215 aaKnown RBP19.57■□□□□ 0.72
LDB3-208ENST00000623007 SKOR2Q2VWA4 1001 aaPredicted RBP19.57■□□□□ 0.72
LDB3-208ENST00000623007 SLC10A5Q5PT55 438 aa19.57■□□□□ 0.72
LDB3-208ENST00000623007 ZMYM1Q5SVZ6 1142 aa19.57■□□□□ 0.72
LDB3-208ENST00000623007 DDX46Q7L014 1031 aaKnown RBP19.57■□□□□ 0.72
LDB3-208ENST00000623007 RUFY3Q7L099 469 aa19.57■□□□□ 0.72
LDB3-208ENST00000623007 CASTP20810 708 aaKnown RBP19.56■□□□□ 0.72
LDB3-208ENST00000623007 SF3B3Q15393 1217 aaKnown RBP19.56■□□□□ 0.72
LDB3-208ENST00000623007 RPAP1Q9BWH6 1393 aaPredicted RBP19.56■□□□□ 0.72
LDB3-208ENST00000623007 SLC27A2O14975 620 aa19.56■□□□□ 0.72
LDB3-208ENST00000623007 SEPT12Q8IYM1 358 aa19.56■□□□□ 0.72
LDB3-208ENST00000623007 TNPO1Q92973 898 aaKnown RBP19.56■□□□□ 0.72
LDB3-208ENST00000623007 CHMP4CQ96CF2 233 aa19.56■□□□□ 0.72
LDB3-208ENST00000623007 FAM196AQ6ZSG2 479 aa19.55■□□□□ 0.72
LDB3-208ENST00000623007 RASEFQ8IZ41 740 aa19.55■□□□□ 0.72
LDB3-208ENST00000623007 SYNE4Q8N205 404 aa19.55■□□□□ 0.72
LDB3-208ENST00000623007 JAKMIP1Q96N16 626 aaKnown RBP19.55■□□□□ 0.72
LDB3-208ENST00000623007 CCDC85AQ96PX6 553 aaPredicted RBP19.55■□□□□ 0.72
LDB3-208ENST00000623007 SETDB2Q96T68 719 aa19.55■□□□□ 0.72
LDB3-208ENST00000623007 UPF3BQ9BZI7 483 aaKnown RBP19.55■□□□□ 0.72
LDB3-208ENST00000623007 PDRG1Q9NUG6 133 aa19.55■□□□□ 0.72
LDB3-208ENST00000623007 CTNNA3Q9UI47 895 aa19.55■□□□□ 0.72
LDB3-208ENST00000623007 TAF1LQ8IZX4 1826 aa19.54■□□□□ 0.72
LDB3-208ENST00000623007 ARID4AP29374 1257 aaPredicted RBP19.54■□□□□ 0.72
LDB3-208ENST00000623007 SLC27A3Q5K4L6 730 aa19.54■□□□□ 0.72
LDB3-208ENST00000623007 BLOC1S2Q6QNY1 142 aa19.54■□□□□ 0.72
LDB3-208ENST00000623007 COL24A1Q17RW2 1714 aa19.53■□□□□ 0.72
LDB3-208ENST00000623007 HCLS1P14317 486 aaPredicted RBP19.53■□□□□ 0.72
LDB3-208ENST00000623007 FGFR2P21802 821 aa19.53■□□□□ 0.72
LDB3-208ENST00000623007 GTF2E1P29083 439 aaPredicted RBP19.53■□□□□ 0.72
LDB3-208ENST00000623007 FKBP4Q02790 459 aaKnown RBP eCLIP19.53■□□□□ 0.72
LDB3-208ENST00000623007 GNPATO15228 680 aa19.52■□□□□ 0.72
LDB3-208ENST00000623007 CYP2E1P05181 493 aaPredicted RBP19.52■□□□□ 0.72
LDB3-208ENST00000623007 TPTE2Q6XPS3 522 aa19.52■□□□□ 0.72
LDB3-208ENST00000623007 QTRT2Q9H974 415 aaKnown RBP19.52■□□□□ 0.72
LDB3-208ENST00000623007 GSE1Q14687 1217 aa19.52■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms