RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 LMBRD1Q9NUN5 540 aa25.49■■□□□ 1.67
LIME1-210ENST00000621325 FSD2A1L4K1 749 aa25.49■■□□□ 1.67
LIME1-210ENST00000621325 MCMDC2Q4G0Z9 681 aa25.49■■□□□ 1.67
LIME1-210ENST00000621325 ZNF34Q8IZ26 560 aa25.49■■□□□ 1.67
LIME1-210ENST00000621325 TCEANC2Q96MN5 208 aa25.49■■□□□ 1.67
LIME1-210ENST00000621325 XAGE2Q96GT9 111 aa25.48■■□□□ 1.67
LIME1-210ENST00000621325 FBXO3Q9UK99 471 aa25.48■■□□□ 1.67
LIME1-210ENST00000621325 ANKRD36CQ5JPF3 1778 aa25.48■■□□□ 1.67
LIME1-210ENST00000621325 RNF20Q5VTR2 975 aa25.48■■□□□ 1.67
LIME1-210ENST00000621325 HSP90AA2PQ14568 343 aaPredicted RBP25.47■■□□□ 1.67
LIME1-210ENST00000621325 FAM98CQ17RN3 349 aaKnown RBP25.47■■□□□ 1.67
LIME1-210ENST00000621325 USPL1Q5W0Q7 1092 aa25.47■■□□□ 1.67
LIME1-210ENST00000621325 PALLDQ8WX93 1383 aa25.47■■□□□ 1.67
LIME1-210ENST00000621325 DDX49Q9Y6V7 483 aaKnown RBP25.47■■□□□ 1.67
LIME1-210ENST00000621325 RIPOR2Q9Y4F9 1068 aa25.47■■□□□ 1.67
LIME1-210ENST00000621325 RIC1Q4ADV7 1423 aa25.46■■□□□ 1.67
LIME1-210ENST00000621325 GOLGA6L3A6NEY3 463 aa25.46■■□□□ 1.67
LIME1-210ENST00000621325 LDHAL6AQ6ZMR3 332 aa25.46■■□□□ 1.67
LIME1-210ENST00000621325 PRPF40AO75400 957 aaKnown RBP25.46■■□□□ 1.67
LIME1-210ENST00000621325 CCDC83Q8IWF9 413 aa25.46■■□□□ 1.67
LIME1-210ENST00000621325 AKAP2Q9Y2D5 859 aa25.46■■□□□ 1.67
LIME1-210ENST00000621325 NWD2Q9ULI1 1742 aa25.45■■□□□ 1.67
LIME1-210ENST00000621325 FAM177BA6PVY3 158 aa25.45■■□□□ 1.67
LIME1-210ENST00000621325 FKBP4Q02790 459 aaKnown RBP eCLIP25.45■■□□□ 1.671e-6■■□□□ 11.7
LIME1-210ENST00000621325 SCARF1Q14162 830 aa25.45■■□□□ 1.67
LIME1-210ENST00000621325 GORABQ5T7V8 394 aa25.45■■□□□ 1.67
LIME1-210ENST00000621325 C8orf37Q96NL8 207 aa25.45■■□□□ 1.67
LIME1-210ENST00000621325 RRAGDQ9NQL2 400 aaPredicted RBP25.45■■□□□ 1.67
LIME1-210ENST00000621325 SH3TC1Q8TE82 1336 aa25.45■■□□□ 1.66
LIME1-210ENST00000621325 UBAP1LF5GYI3 381 aa25.45■■□□□ 1.66
LIME1-210ENST00000621325 PSMA5P28066 241 aa25.45■■□□□ 1.66
LIME1-210ENST00000621325 ST3GAL1Q11201 340 aa25.45■■□□□ 1.66
LIME1-210ENST00000621325 ME3Q16798 604 aa25.45■■□□□ 1.66
LIME1-210ENST00000621325 KLHL40Q2TBA0 621 aa25.45■■□□□ 1.66
LIME1-210ENST00000621325 ANKRD18BA2A2Z9 1011 aa25.44■■□□□ 1.66
LIME1-210ENST00000621325 METTL24Q5JXM2 366 aa25.44■■□□□ 1.66
LIME1-210ENST00000621325 TPCN1Q9ULQ1 816 aa25.44■■□□□ 1.66
LIME1-210ENST00000621325 PDE8AO60658 829 aa25.44■■□□□ 1.66
LIME1-210ENST00000621325 CCDC158Q5M9N0 1113 aa25.44■■□□□ 1.66
LIME1-210ENST00000621325 TTC39AQ5SRH9 613 aa25.44■■□□□ 1.66
LIME1-210ENST00000621325 SUSD4Q5VX71 490 aa25.44■■□□□ 1.66
LIME1-210ENST00000621325 BLOC1S2Q6QNY1 142 aa25.44■■□□□ 1.66
LIME1-210ENST00000621325 HMG20BQ9P0W2 317 aa25.44■■□□□ 1.66
LIME1-210ENST00000621325 NECAB1Q8N987 351 aa25.43■■□□□ 1.66
LIME1-210ENST00000621325 TSGA10IPQ3SY00 556 aa25.43■■□□□ 1.66
LIME1-210ENST00000621325 FOXD4L6Q3SYB3 417 aaPredicted RBP25.43■■□□□ 1.66
LIME1-210ENST00000621325 ZMYM1Q5SVZ6 1142 aa25.43■■□□□ 1.66
LIME1-210ENST00000621325 FOXD4L3Q6VB84 417 aaPredicted RBP25.43■■□□□ 1.66
LIME1-210ENST00000621325 CNNM1Q9NRU3 951 aa25.43■■□□□ 1.66
LIME1-210ENST00000621325 MYH14Q7Z406 1995 aaKnown RBP25.43■■□□□ 1.66
LIME1-210ENST00000621325 HCLS1P14317 486 aaPredicted RBP25.42■■□□□ 1.66
LIME1-210ENST00000621325 RPS6KB1P23443 525 aa25.42■■□□□ 1.66
LIME1-210ENST00000621325 PI16Q6UXB8 463 aa25.42■■□□□ 1.66
LIME1-210ENST00000621325 PPIL4Q8WUA2 492 aaKnown RBP eCLIP25.42■■□□□ 1.66
LIME1-210ENST00000621325 NGLY1Q96IV0 654 aa25.42■■□□□ 1.66
LIME1-210ENST00000621325 CAMTA2O94983 1202 aa25.42■■□□□ 1.66
LIME1-210ENST00000621325 ATP2B3Q16720 1220 aa25.42■■□□□ 1.66
LIME1-210ENST00000621325 L1TD1Q5T7N2 865 aaKnown RBP25.42■■□□□ 1.66
LIME1-210ENST00000621325 ZSCAN21Q9Y5A6 473 aaPredicted RBP25.42■■□□□ 1.66
LIME1-210ENST00000621325 U3KPZ7 1027 aaPredicted RBP25.42■■□□□ 1.66
LIME1-210ENST00000621325 CYP21A2P08686 494 aa25.41■■□□□ 1.66
LIME1-210ENST00000621325 XRCC6P12956 609 aaKnown RBP eCLIP25.41■■□□□ 1.66
LIME1-210ENST00000621325 GAS2L3Q86XJ1 694 aa25.41■■□□□ 1.66
LIME1-210ENST00000621325 HELLSQ9NRZ9 838 aa25.41■■□□□ 1.66
LIME1-210ENST00000621325 SMC3Q9UQE7 1217 aa25.41■■□□□ 1.66
LIME1-210ENST00000621325 RNF113AO15541 343 aaKnown RBP25.41■■□□□ 1.66
LIME1-210ENST00000621325 ZSCAN31Q96LW9 406 aaPredicted RBP25.41■■□□□ 1.66
LIME1-210ENST00000621325 MYH3P11055 1940 aa25.4■■□□□ 1.66
LIME1-210ENST00000621325 SH2B1Q9NRF2 756 aaPredicted RBP25.4■■□□□ 1.66
LIME1-210ENST00000621325 BCL9LQ86UU0 1499 aa25.4■■□□□ 1.66
LIME1-210ENST00000621325 NCLP19338 710 aaKnown RBP25.39■■□□□ 1.66
LIME1-210ENST00000621325 KCNQ4P56696 695 aa25.39■■□□□ 1.66
LIME1-210ENST00000621325 RBM10P98175 930 aaKnown RBP25.39■■□□□ 1.66
LIME1-210ENST00000621325 TOB2Q14106 344 aaPredicted RBP25.39■■□□□ 1.66
LIME1-210ENST00000621325 VGLL2Q8N8G2 317 aa25.39■■□□□ 1.66
LIME1-210ENST00000621325 MAST3O60307 1309 aa25.39■■□□□ 1.66
LIME1-210ENST00000621325 WDR33Q9C0J8 1336 aaKnown RBP25.39■■□□□ 1.66
LIME1-210ENST00000621325 ZAP70P43403 619 aa25.39■■□□□ 1.66
LIME1-210ENST00000621325 GPT2Q8TD30 523 aa25.39■■□□□ 1.66
LIME1-210ENST00000621325 SYT1P21579 422 aa25.38■■□□□ 1.65
LIME1-210ENST00000621325 PTF1AQ7RTS3 328 aa25.38■■□□□ 1.65
LIME1-210ENST00000621325 A0A0G2JLW4 131 aa25.38■■□□□ 1.65
LIME1-210ENST00000621325 M0R2C6 588 aa25.38■■□□□ 1.65
LIME1-210ENST00000621325 RRP9O43818 475 aaKnown RBP25.38■■□□□ 1.65
LIME1-210ENST00000621325 GJB2P29033 226 aa25.37■■□□□ 1.65
LIME1-210ENST00000621325 OSBP2Q969R2 916 aa25.37■■□□□ 1.65
LIME1-210ENST00000621325 STOX1Q6ZVD7 989 aa25.37■■□□□ 1.65
LIME1-210ENST00000621325 NEK1Q96PY6 1258 aa25.37■■□□□ 1.65
LIME1-210ENST00000621325 VPS72Q15906 364 aa25.36■■□□□ 1.65
LIME1-210ENST00000621325 CAVIN1Q6NZI2 390 aaKnown RBP25.36■■□□□ 1.65
LIME1-210ENST00000621325 HELBQ8NG08 1087 aaPredicted RBP25.36■■□□□ 1.65
LIME1-210ENST00000621325 UTP14AQ9BVJ6 771 aaKnown RBP25.36■■□□□ 1.65
LIME1-210ENST00000621325 PANK2Q9BZ23 570 aa25.36■■□□□ 1.65
LIME1-210ENST00000621325 NSFL1CQ9UNZ2 370 aaKnown RBP25.36■■□□□ 1.65
LIME1-210ENST00000621325 KRT32Q14532 448 aa25.36■■□□□ 1.65
LIME1-210ENST00000621325 SMARCC1Q92922 1105 aaPredicted RBP25.36■■□□□ 1.65
LIME1-210ENST00000621325 STX6O43752 255 aa25.35■■□□□ 1.65
LIME1-210ENST00000621325 HSPD1P10809 573 aaKnown RBP25.35■■□□□ 1.65
LIME1-210ENST00000621325 MCAMP43121 646 aa25.35■■□□□ 1.65
LIME1-210ENST00000621325 NIP7Q9Y221 180 aaKnown RBP eCLIP25.35■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms