RNA–Protein interactions for RNA: ENST00000606499.1

MSH6-211, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 833 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-211ENST00000606499 HDAC1Q13547 482 aaPredicted RBP9.54□□□□□ -0.88
MSH6-211ENST00000606499 ATG9AQ7Z3C6 839 aa9.54□□□□□ -0.88
MSH6-211ENST00000606499 TTLL6Q8N841 843 aa9.54□□□□□ -0.88
MSH6-211ENST00000606499 CNKSR1Q969H4 720 aa9.54□□□□□ -0.88
MSH6-211ENST00000606499 MPHOSPH8Q99549 860 aa9.54□□□□□ -0.88
MSH6-211ENST00000606499 CNNM1Q9NRU3 951 aa9.54□□□□□ -0.88
MSH6-211ENST00000606499 RNF216Q9NWF9 866 aaPredicted RBP9.54□□□□□ -0.88
MSH6-211ENST00000606499 PIM2Q9P1W9 311 aa9.54□□□□□ -0.88
MSH6-211ENST00000606499 SNED1Q8TER0 1413 aa9.54□□□□□ -0.88
MSH6-211ENST00000606499 EYA2O00167 538 aa9.53□□□□□ -0.88
MSH6-211ENST00000606499 C21orf2O43822 256 aa9.53□□□□□ -0.88
MSH6-211ENST00000606499 BBOX1O75936 387 aa9.53□□□□□ -0.88
MSH6-211ENST00000606499 OS9Q13438 667 aaPredicted RBP9.53□□□□□ -0.88
MSH6-211ENST00000606499 DALRD3Q5D0E6 543 aaKnown RBP9.53□□□□□ -0.88
MSH6-211ENST00000606499 HELBQ8NG08 1087 aaPredicted RBP9.53□□□□□ -0.88
MSH6-211ENST00000606499 BSDC1Q9NW68 430 aaPredicted RBP9.53□□□□□ -0.88
MSH6-211ENST00000606499 BCS1LQ9Y276 419 aa9.53□□□□□ -0.88
MSH6-211ENST00000606499 ATP6V0A2Q9Y487 856 aa9.53□□□□□ -0.88
MSH6-211ENST00000606499 RIPOR2Q9Y4F9 1068 aa9.53□□□□□ -0.88
MSH6-211ENST00000606499 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.53□□□□□ -0.88
MSH6-211ENST00000606499 ZNF609O15014 1411 aa9.52□□□□□ -0.89
MSH6-211ENST00000606499 CIAO1O76071 339 aa9.52□□□□□ -0.89
MSH6-211ENST00000606499 SASH1O94885 1247 aa9.52□□□□□ -0.89
MSH6-211ENST00000606499 CHRNDQ07001 517 aa9.52□□□□□ -0.89
MSH6-211ENST00000606499 METTL24Q5JXM2 366 aa9.52□□□□□ -0.89
MSH6-211ENST00000606499 ERICH6BQ5W0A0 696 aa9.52□□□□□ -0.89
MSH6-211ENST00000606499 B4GALNT3Q6L9W6 998 aa9.52□□□□□ -0.89
MSH6-211ENST00000606499 TMC4Q7Z404 712 aa9.52□□□□□ -0.89
MSH6-211ENST00000606499 C7orf43Q8WVR3 580 aa9.52□□□□□ -0.89
MSH6-211ENST00000606499 CCDC136Q96JN2 1154 aa9.52□□□□□ -0.89
MSH6-211ENST00000606499 RWDD1Q9H446 243 aaPredicted RBP9.52□□□□□ -0.89
MSH6-211ENST00000606499 MINPP1Q9UNW1 487 aa9.52□□□□□ -0.89
MSH6-211ENST00000606499 NOP58Q9Y2X3 529 aaKnown RBP9.52□□□□□ -0.89
MSH6-211ENST00000606499 GTF3C3Q9Y5Q9 886 aa9.52□□□□□ -0.89
MSH6-211ENST00000606499 TIAM2Q8IVF5 1701 aa9.51□□□□□ -0.89
MSH6-211ENST00000606499 WTIPA6NIX2 430 aaPredicted RBP9.51□□□□□ -0.89
MSH6-211ENST00000606499 SNAP23O00161 211 aa9.51□□□□□ -0.89
MSH6-211ENST00000606499 TAF5LO75529 589 aa9.51□□□□□ -0.89
MSH6-211ENST00000606499 IL15P40933 162 aaPredicted RBP9.51□□□□□ -0.89
MSH6-211ENST00000606499 GPSM2P81274 684 aa9.51□□□□□ -0.89
MSH6-211ENST00000606499 TFCP2Q12800 502 aa9.51□□□□□ -0.89
MSH6-211ENST00000606499 G3BP1Q13283 466 aaKnown RBP eCLIP9.51□□□□□ -0.894e-6■■■■□ 20.5
MSH6-211ENST00000606499 SP8Q8IXZ3 490 aa9.51□□□□□ -0.89
MSH6-211ENST00000606499 PELP1Q8IZL8 1130 aaKnown RBP9.51□□□□□ -0.89
MSH6-211ENST00000606499 VGLL2Q8N8G2 317 aa9.51□□□□□ -0.89
MSH6-211ENST00000606499 BCL11AQ9H165 835 aa9.51□□□□□ -0.89
MSH6-211ENST00000606499 DCTPP1Q9H773 170 aa9.51□□□□□ -0.89
MSH6-211ENST00000606499 PPP4R2Q9NY27 417 aa9.51□□□□□ -0.89
MSH6-211ENST00000606499 FBXO3Q9UK99 471 aa9.51□□□□□ -0.89
MSH6-211ENST00000606499 MROH5Q6ZUA9 1318 aa9.51□□□□□ -0.89
MSH6-211ENST00000606499 KDM2BQ8NHM5 1336 aa9.51□□□□□ -0.89
MSH6-211ENST00000606499 CCDC88AQ3V6T2 1871 aa9.51□□□□□ -0.89
MSH6-211ENST00000606499 MYH13Q9UKX3 1938 aa9.5□□□□□ -0.89
MSH6-211ENST00000606499 SMARCA5O60264 1052 aaPredicted RBP9.5□□□□□ -0.89
MSH6-211ENST00000606499 YBX3P16989 372 aaKnown RBP eCLIP9.5□□□□□ -0.89
MSH6-211ENST00000606499 CCDC93Q567U6 631 aa9.5□□□□□ -0.89
MSH6-211ENST00000606499 HSP90AB4PQ58FF6 505 aa9.5□□□□□ -0.89
MSH6-211ENST00000606499 SMC5Q8IY18 1101 aa9.5□□□□□ -0.89
MSH6-211ENST00000606499 GPR101Q96P66 508 aaPredicted RBP9.5□□□□□ -0.89
MSH6-211ENST00000606499 IL1RAPL2Q9NP60 686 aa9.5□□□□□ -0.89
MSH6-211ENST00000606499 ANKIB1Q9P2G1 1089 aa9.5□□□□□ -0.89
MSH6-211ENST00000606499 NSFL1CQ9UNZ2 370 aaKnown RBP9.5□□□□□ -0.89
MSH6-211ENST00000606499 XDHP47989 1333 aa9.5□□□□□ -0.89
MSH6-211ENST00000606499 ZNF646O15015 1829 aaPredicted RBP9.49□□□□□ -0.89
MSH6-211ENST00000606499 COL4A5P29400 1685 aa9.49□□□□□ -0.89
MSH6-211ENST00000606499 UFL1O94874 794 aa9.49□□□□□ -0.89
MSH6-211ENST00000606499 PDE8BO95263 885 aa9.49□□□□□ -0.89
MSH6-211ENST00000606499 KLRK1P26718 216 aa9.49□□□□□ -0.89
MSH6-211ENST00000606499 HOXD11P31277 338 aaPredicted RBP9.49□□□□□ -0.89
MSH6-211ENST00000606499 DPP8Q6V1X1 898 aaPredicted RBP9.49□□□□□ -0.89
MSH6-211ENST00000606499 ERC1Q8IUD2 1116 aa9.49□□□□□ -0.89
MSH6-211ENST00000606499 RHPN1Q8TCX5 695 aa9.49□□□□□ -0.89
MSH6-211ENST00000606499 GCC1Q96CN9 775 aa9.49□□□□□ -0.89
MSH6-211ENST00000606499 KIF1BPQ96EK5 621 aa9.49□□□□□ -0.89
MSH6-211ENST00000606499 LRRCC1Q9C099 1032 aa9.49□□□□□ -0.89
MSH6-211ENST00000606499 ANKRD2Q9GZV1 360 aa9.49□□□□□ -0.89
MSH6-211ENST00000606499 TMX4Q9H1E5 349 aaPredicted RBP9.49□□□□□ -0.89
MSH6-211ENST00000606499 CEP126Q9P2H0 1117 aa9.49□□□□□ -0.89
MSH6-211ENST00000606499 SBF1O95248 1867 aa9.49□□□□□ -0.89
MSH6-211ENST00000606499 NFKBIEO00221 500 aa9.48□□□□□ -0.89
MSH6-211ENST00000606499 RAB11FIP3O75154 756 aa9.48□□□□□ -0.89
MSH6-211ENST00000606499 KCNJ4P48050 445 aa9.48□□□□□ -0.89
MSH6-211ENST00000606499 RASSF7Q02833 373 aa9.48□□□□□ -0.89
MSH6-211ENST00000606499 PUM3Q15397 648 aaKnown RBP9.48□□□□□ -0.89
MSH6-211ENST00000606499 ATP2B3Q16720 1220 aa9.48□□□□□ -0.89
MSH6-211ENST00000606499 CENPQQ7L2Z9 268 aaPredicted RBP9.48□□□□□ -0.89
MSH6-211ENST00000606499 MPNDQ8N594 471 aa9.48□□□□□ -0.89
MSH6-211ENST00000606499 TBC1D16Q8TBP0 767 aa9.48□□□□□ -0.89
MSH6-211ENST00000606499 TLR7Q9NYK1 1049 aaKnown RBP9.48□□□□□ -0.89
MSH6-211ENST00000606499 PODXL2Q9NZ53 605 aa9.48□□□□□ -0.89
MSH6-211ENST00000606499 POLLQ9UGP5 575 aa9.48□□□□□ -0.89
MSH6-211ENST00000606499 GGA1Q9UJY5 639 aa9.48□□□□□ -0.89
MSH6-211ENST00000606499 ZNF804BA4D1E1 1349 aa9.48□□□□□ -0.89
MSH6-211ENST00000606499 DICER1Q9UPY3 1922 aaKnown RBP9.48□□□□□ -0.89
MSH6-211ENST00000606499 A0A1B0GUL7 405 aa9.47□□□□□ -0.89
MSH6-211ENST00000606499 C6orf229H3BNL8 230 aa9.47□□□□□ -0.89
MSH6-211ENST00000606499 FGFR2P21802 821 aa9.47□□□□□ -0.89
MSH6-211ENST00000606499 ADORA1P30542 326 aa9.47□□□□□ -0.89
MSH6-211ENST00000606499 TIMM10P62072 90 aa9.47□□□□□ -0.89
MSH6-211ENST00000606499 FKBP4Q02790 459 aaKnown RBP eCLIP9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms