RNA–Protein interactions for RNA: ENST00000589520.1

VPS25-203, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 3

Gene VPS25, Length 639 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-203ENST00000589520 DEKP35659 375 aaKnown RBP12.46□□□□□ -0.41
VPS25-203ENST00000589520 TIMM10P62072 90 aa12.46□□□□□ -0.41
VPS25-203ENST00000589520 ITPK1Q13572 414 aa12.46□□□□□ -0.41
VPS25-203ENST00000589520 TTC39AQ5SRH9 613 aa12.46□□□□□ -0.41
VPS25-203ENST00000589520 USPL1Q5W0Q7 1092 aa12.46□□□□□ -0.41
VPS25-203ENST00000589520 ZNF594Q96JF6 807 aaPredicted RBP12.46□□□□□ -0.41
VPS25-203ENST00000589520 DNAJC2Q99543 621 aaKnown RBP12.46□□□□□ -0.41
VPS25-203ENST00000589520 SH2B1Q9NRF2 756 aaPredicted RBP12.46□□□□□ -0.41
VPS25-203ENST00000589520 LIMCH1Q9UPQ0 1083 aa12.46□□□□□ -0.41
VPS25-203ENST00000589520 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.46□□□□□ -0.41
VPS25-203ENST00000589520 RBM8AQ9Y5S9 174 aaKnown RBP12.46□□□□□ -0.41
VPS25-203ENST00000589520 RTL9Q8NET4 1388 aa12.45□□□□□ -0.42
VPS25-203ENST00000589520 ONECUT3O60422 494 aaPredicted RBP12.45□□□□□ -0.42
VPS25-203ENST00000589520 TAF5LO75529 589 aa12.45□□□□□ -0.42
VPS25-203ENST00000589520 PTH1RQ03431 593 aa12.45□□□□□ -0.42
VPS25-203ENST00000589520 TTF1Q15361 905 aaPredicted RBP12.45□□□□□ -0.42
VPS25-203ENST00000589520 CCDC152Q4G0S7 254 aa12.45□□□□□ -0.42
VPS25-203ENST00000589520 METTL24Q5JXM2 366 aa12.45□□□□□ -0.42
VPS25-203ENST00000589520 CREB3L3Q68CJ9 461 aa12.45□□□□□ -0.42
VPS25-203ENST00000589520 ZSCAN25Q6NSZ9 544 aa12.45□□□□□ -0.42
VPS25-203ENST00000589520 PRPF40BQ6NWY9 871 aaKnown RBP12.45□□□□□ -0.42
VPS25-203ENST00000589520 CHMP4CQ96CF2 233 aa12.45□□□□□ -0.42
VPS25-203ENST00000589520 XAGE2Q96GT9 111 aa12.45□□□□□ -0.42
VPS25-203ENST00000589520 FAM227BQ96M60 508 aa12.45□□□□□ -0.42
VPS25-203ENST00000589520 TTC14Q96N46 770 aa12.45□□□□□ -0.42
VPS25-203ENST00000589520 PUS3Q9BZE2 481 aaKnown RBP12.45□□□□□ -0.42
VPS25-203ENST00000589520 CNNM1Q9NRU3 951 aa12.45□□□□□ -0.42
VPS25-203ENST00000589520 RREB1Q92766 1687 aa12.45□□□□□ -0.42
VPS25-203ENST00000589520 A0A0D9SFI3 127 aa12.44□□□□□ -0.42
VPS25-203ENST00000589520 RNF113AO15541 343 aaKnown RBP12.44□□□□□ -0.42
VPS25-203ENST00000589520 PDE8BO95263 885 aa12.44□□□□□ -0.42
VPS25-203ENST00000589520 CYP2E1P05181 493 aaPredicted RBP12.44□□□□□ -0.42
VPS25-203ENST00000589520 HMGB1P09429 215 aaKnown RBP12.44□□□□□ -0.42
VPS25-203ENST00000589520 UQCRFS1P1P0C7P4 283 aa12.44□□□□□ -0.42
VPS25-203ENST00000589520 ATP2B3Q16720 1220 aa12.44□□□□□ -0.42
VPS25-203ENST00000589520 ZMYM1Q5SVZ6 1142 aa12.44□□□□□ -0.42
VPS25-203ENST00000589520 SUSD4Q5VX71 490 aa12.44□□□□□ -0.42
VPS25-203ENST00000589520 RUFY3Q7L099 469 aa12.44□□□□□ -0.42
VPS25-203ENST00000589520 RASEFQ8IZ41 740 aa12.44□□□□□ -0.42
VPS25-203ENST00000589520 GJD4Q96KN9 370 aaPredicted RBP12.44□□□□□ -0.42
VPS25-203ENST00000589520 DSCC1Q9BVC3 393 aa12.44□□□□□ -0.42
VPS25-203ENST00000589520 GREM2Q9H772 168 aa12.44□□□□□ -0.42
VPS25-203ENST00000589520 PDRG1Q9NUG6 133 aa12.44□□□□□ -0.42
VPS25-203ENST00000589520 SPEF2Q9C093 1822 aa12.44□□□□□ -0.42
VPS25-203ENST00000589520 UBN2Q6ZU65 1347 aa12.43□□□□□ -0.42
VPS25-203ENST00000589520 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.43□□□□□ -0.42
VPS25-203ENST00000589520 PSDA5PKW4 1024 aaPredicted RBP12.43□□□□□ -0.42
VPS25-203ENST00000589520 SLC27A2O14975 620 aa12.43□□□□□ -0.42
VPS25-203ENST00000589520 RPS6KA4O75676 772 aa12.43□□□□□ -0.42
VPS25-203ENST00000589520 LPIN2Q92539 896 aa12.43□□□□□ -0.42
VPS25-203ENST00000589520 JAKMIP1Q96N16 626 aaKnown RBP12.43□□□□□ -0.42
VPS25-203ENST00000589520 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.43□□□□□ -0.42
VPS25-203ENST00000589520 TRPC5Q9UL62 973 aaPredicted RBP12.43□□□□□ -0.42
VPS25-203ENST00000589520 NIP7Q9Y221 180 aaKnown RBP eCLIP12.43□□□□□ -0.42
VPS25-203ENST00000589520 ANKRD36CQ5JPF3 1778 aa12.43□□□□□ -0.42
VPS25-203ENST00000589520 GOLIM4O00461 696 aa12.42□□□□□ -0.42
VPS25-203ENST00000589520 KCNQ2O43526 872 aa12.42□□□□□ -0.42
VPS25-203ENST00000589520 TRAK2O60296 914 aa12.42□□□□□ -0.42
VPS25-203ENST00000589520 CASTP20810 708 aaKnown RBP12.42□□□□□ -0.42
VPS25-203ENST00000589520 IGHMBP2P38935 993 aaKnown RBP12.42□□□□□ -0.42
VPS25-203ENST00000589520 PUM3Q15397 648 aaKnown RBP12.42□□□□□ -0.42
VPS25-203ENST00000589520 SLC10A5Q5PT55 438 aa12.42□□□□□ -0.42
VPS25-203ENST00000589520 BLOC1S2Q6QNY1 142 aa12.42□□□□□ -0.42
VPS25-203ENST00000589520 CDC5LQ99459 802 aaKnown RBP12.42□□□□□ -0.42
VPS25-203ENST00000589520 MPHOSPH8Q99549 860 aa12.42□□□□□ -0.42
VPS25-203ENST00000589520 UPF3BQ9BZI7 483 aaKnown RBP12.42□□□□□ -0.42
VPS25-203ENST00000589520 NYXQ9GZU5 481 aa12.42□□□□□ -0.42
VPS25-203ENST00000589520 FOXD4L1Q9NU39 408 aa12.42□□□□□ -0.42
VPS25-203ENST00000589520 CTNNA3Q9UI47 895 aa12.42□□□□□ -0.42
VPS25-203ENST00000589520 ISY1Q9ULR0 285 aaKnown RBP12.42□□□□□ -0.42
VPS25-203ENST00000589520 NTSR2O95665 410 aa12.41□□□□□ -0.42
VPS25-203ENST00000589520 SLC5A1P13866 664 aa12.41□□□□□ -0.42
VPS25-203ENST00000589520 AK2P54819 239 aa12.41□□□□□ -0.42
VPS25-203ENST00000589520 SF3B3Q15393 1217 aaKnown RBP12.41□□□□□ -0.42
VPS25-203ENST00000589520 DDX46Q7L014 1031 aaKnown RBP12.41□□□□□ -0.42
VPS25-203ENST00000589520 VGLL2Q8N8G2 317 aa12.41□□□□□ -0.42
VPS25-203ENST00000589520 NARFQ9UHQ1 456 aa12.41□□□□□ -0.42
VPS25-203ENST00000589520 RPAP1Q9BWH6 1393 aaPredicted RBP12.41□□□□□ -0.42
VPS25-203ENST00000589520 NUP98P52948 1817 aa12.4□□□□□ -0.42
VPS25-203ENST00000589520 BAG4O95429 457 aaKnown RBP12.4□□□□□ -0.42
VPS25-203ENST00000589520 BRD1O95696 1058 aa12.4□□□□□ -0.42
VPS25-203ENST00000589520 LINC00116Q8NCU8 138 aa12.4□□□□□ -0.42
VPS25-203ENST00000589520 KAT6BQ8WYB5 2073 aa12.4□□□□□ -0.42
VPS25-203ENST00000589520 WDR33Q9C0J8 1336 aaKnown RBP12.39□□□□□ -0.43
VPS25-203ENST00000589520 FGFR2P21802 821 aa12.39□□□□□ -0.43
VPS25-203ENST00000589520 RPS6KB1P23443 525 aa12.39□□□□□ -0.43
VPS25-203ENST00000589520 ARID4AP29374 1257 aaPredicted RBP12.39□□□□□ -0.43
VPS25-203ENST00000589520 FKBP4Q02790 459 aaKnown RBP eCLIP12.39□□□□□ -0.43
VPS25-203ENST00000589520 DEFB132Q7Z7B7 95 aa12.39□□□□□ -0.43
VPS25-203ENST00000589520 ZNF589Q86UQ0 364 aaPredicted RBP12.39□□□□□ -0.43
VPS25-203ENST00000589520 SYNE4Q8N205 404 aa12.39□□□□□ -0.43
VPS25-203ENST00000589520 ZGPATQ8N5A5 531 aaKnown RBP12.39□□□□□ -0.43
VPS25-203ENST00000589520 EDC3Q96F86 508 aaKnown RBP12.39□□□□□ -0.43
VPS25-203ENST00000589520 NEK1Q96PY6 1258 aa12.39□□□□□ -0.43
VPS25-203ENST00000589520 RTCBQ9Y3I0 505 aaKnown RBP12.39□□□□□ -0.43
VPS25-203ENST00000589520 ATP6V1DQ9Y5K8 247 aa12.39□□□□□ -0.43
VPS25-203ENST00000589520 IGSF3O75054 1194 aa12.38□□□□□ -0.43
VPS25-203ENST00000589520 ZPR1O75312 459 aa12.38□□□□□ -0.43
VPS25-203ENST00000589520 UBE3CQ15386 1083 aa12.38□□□□□ -0.43
VPS25-203ENST00000589520 L1TD1Q5T7N2 865 aaKnown RBP12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms