RNA–Protein interactions for RNA: ENST00000578317.5

COPS3-215, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 1,625 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-215ENST00000578317 FAM198AQ9UFP1 575 aa10.09□□□□□ -0.79
COPS3-215ENST00000578317 NARFQ9UHQ1 456 aa10.09□□□□□ -0.79
COPS3-215ENST00000578317 TBC1D2BQ9UPU7 963 aa10.09□□□□□ -0.79
COPS3-215ENST00000578317 C5P01031 1676 aa10.09□□□□□ -0.79
COPS3-215ENST00000578317 LY75O60449 1722 aa10.09□□□□□ -0.79
COPS3-215ENST00000578317 RGPD3A6NKT7 1758 aaPredicted RBP10.08□□□□□ -0.8
COPS3-215ENST00000578317 RGPD4Q7Z3J3 1758 aa10.08□□□□□ -0.8
COPS3-215ENST00000578317 PPP1R3GB7ZBB8 358 aa10.08□□□□□ -0.8
COPS3-215ENST00000578317 PTPREP23469 700 aa10.08□□□□□ -0.8
COPS3-215ENST00000578317 ITPRIPQ8IWB1 547 aa10.08□□□□□ -0.8
COPS3-215ENST00000578317 CCDC191Q8NCU4 936 aa10.08□□□□□ -0.8
COPS3-215ENST00000578317 EXOC6Q8TAG9 804 aa10.08□□□□□ -0.8
COPS3-215ENST00000578317 TJP1Q07157 1748 aa10.08□□□□□ -0.8
COPS3-215ENST00000578317 PXDNLA1KZ92 1463 aa10.08□□□□□ -0.8
COPS3-215ENST00000578317 COL15A1P39059 1388 aa10.08□□□□□ -0.8
COPS3-215ENST00000578317 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.07□□□□□ -0.8
COPS3-215ENST00000578317 NEURL1BA8MQ27 555 aa10.07□□□□□ -0.8
COPS3-215ENST00000578317 OATP04181 439 aa10.07□□□□□ -0.8
COPS3-215ENST00000578317 HLFQ16534 295 aa10.07□□□□□ -0.8
COPS3-215ENST00000578317 FAM161AQ3B820 660 aa10.07□□□□□ -0.8
COPS3-215ENST00000578317 AMIGO3Q86WK7 504 aa10.07□□□□□ -0.8
COPS3-215ENST00000578317 USP44Q9H0E7 712 aa10.07□□□□□ -0.8
COPS3-215ENST00000578317 ZBTB3Q9H5J0 574 aa10.07□□□□□ -0.8
COPS3-215ENST00000578317 RBM27Q9P2N5 1060 aaKnown RBP10.07□□□□□ -0.8
COPS3-215ENST00000578317 ZNF652Q9Y2D9 606 aa10.07□□□□□ -0.8
COPS3-215ENST00000578317 ZNF330Q9Y3S2 320 aaPredicted RBP10.07□□□□□ -0.8
COPS3-215ENST00000578317 UTYO14607 1347 aa10.07□□□□□ -0.8
COPS3-215ENST00000578317 LAMB4A4D0S4 1761 aa10.07□□□□□ -0.8
COPS3-215ENST00000578317 RREB1Q92766 1687 aa10.07□□□□□ -0.8
COPS3-215ENST00000578317 FAM205CA6NFA0 338 aa10.07□□□□□ -0.8
COPS3-215ENST00000578317 ZPR1O75312 459 aa10.07□□□□□ -0.8
COPS3-215ENST00000578317 GNAI3P08754 354 aa10.07□□□□□ -0.8
COPS3-215ENST00000578317 RFC4P35249 363 aa10.07□□□□□ -0.8
COPS3-215ENST00000578317 PRSS12P56730 875 aa10.07□□□□□ -0.8
COPS3-215ENST00000578317 IRX6P78412 446 aaPredicted RBP10.07□□□□□ -0.8
COPS3-215ENST00000578317 GCKRQ14397 625 aa10.07□□□□□ -0.8
COPS3-215ENST00000578317 SKIV2LQ15477 1246 aaKnown RBP10.07□□□□□ -0.8
COPS3-215ENST00000578317 SLC15A2Q16348 729 aa10.07□□□□□ -0.8
COPS3-215ENST00000578317 ZNF34Q8IZ26 560 aa10.07□□□□□ -0.8
COPS3-215ENST00000578317 KCNK17Q96T54 332 aa10.07□□□□□ -0.8
COPS3-215ENST00000578317 MYD88Q99836 296 aa10.07□□□□□ -0.8
COPS3-215ENST00000578317 C1orf115Q9H7X2 142 aa10.07□□□□□ -0.8
COPS3-215ENST00000578317 TFCP2L1Q9NZI6 479 aa10.07□□□□□ -0.8
COPS3-215ENST00000578317 HDAC5Q9UQL6 1122 aa10.07□□□□□ -0.8
COPS3-215ENST00000578317 CACNA1FO60840 1977 aa10.06□□□□□ -0.8
COPS3-215ENST00000578317 ZNF827Q17R98 1081 aa10.06□□□□□ -0.8
COPS3-215ENST00000578317 METTL3Q86U44 580 aaKnown RBP10.06□□□□□ -0.8
COPS3-215ENST00000578317 A6NJR5 290 aa10.05□□□□□ -0.8
COPS3-215ENST00000578317 ATP5J2-PTCD1G3V325 749 aa10.05□□□□□ -0.8
COPS3-215ENST00000578317 H7C1W4 665 aa10.05□□□□□ -0.8
COPS3-215ENST00000578317 GRM8O00222 908 aa10.05□□□□□ -0.8
COPS3-215ENST00000578317 PSEN2P49810 448 aa10.05□□□□□ -0.8
COPS3-215ENST00000578317 CWF19L2Q2TBE0 894 aaKnown RBP10.05□□□□□ -0.8
COPS3-215ENST00000578317 PARP10Q53GL7 1025 aa10.05□□□□□ -0.8
COPS3-215ENST00000578317 NLRP10Q86W26 655 aa10.05□□□□□ -0.8
COPS3-215ENST00000578317 ARID3AQ99856 593 aa10.05□□□□□ -0.8
COPS3-215ENST00000578317 BEGAINQ9BUH8 593 aa10.05□□□□□ -0.8
COPS3-215ENST00000578317 CWC25Q9NXE8 425 aaPredicted RBP10.05□□□□□ -0.8
COPS3-215ENST00000578317 STK32BQ9NY57 414 aa10.05□□□□□ -0.8
COPS3-215ENST00000578317 TSKSQ9UJT2 592 aa10.05□□□□□ -0.8
COPS3-215ENST00000578317 NUP188Q5SRE5 1749 aa10.05□□□□□ -0.8
COPS3-215ENST00000578317 USP42Q9H9J4 1324 aaKnown RBP10.05□□□□□ -0.8
COPS3-215ENST00000578317 COL5A3P25940 1745 aaPredicted RBP10.04□□□□□ -0.8
COPS3-215ENST00000578317 C3orf80F5H4A9 247 aa10.04□□□□□ -0.8
COPS3-215ENST00000578317 APBB1O00213 710 aa10.04□□□□□ -0.8
COPS3-215ENST00000578317 USPL1Q5W0Q7 1092 aa10.04□□□□□ -0.8
COPS3-215ENST00000578317 SMIM5Q71RC9 77 aa10.04□□□□□ -0.8
COPS3-215ENST00000578317 COL23A1Q86Y22 540 aaPredicted RBP10.04□□□□□ -0.8
COPS3-215ENST00000578317 MEIS3Q99687 375 aa10.04□□□□□ -0.8
COPS3-215ENST00000578317 FAM217BQ9NTX9 383 aaPredicted RBP10.04□□□□□ -0.8
COPS3-215ENST00000578317 C9orf78Q9NZ63 289 aaPredicted RBP10.04□□□□□ -0.8
COPS3-215ENST00000578317 ADGRG1Q9Y653 693 aa10.04□□□□□ -0.8
COPS3-215ENST00000578317 MYH14Q7Z406 1995 aaKnown RBP10.04□□□□□ -0.8
COPS3-215ENST00000578317 C4BP0C0L5 1744 aa10.04□□□□□ -0.8
COPS3-215ENST00000578317 GNAI2P04899 355 aa10.04□□□□□ -0.8
COPS3-215ENST00000578317 GYS1P13807 737 aa10.04□□□□□ -0.8
COPS3-215ENST00000578317 CASP7P55210 303 aa10.04□□□□□ -0.8
COPS3-215ENST00000578317 NLGN1Q8N2Q7 840 aa10.04□□□□□ -0.8
COPS3-215ENST00000578317 HS3ST6Q96QI5 342 aa10.04□□□□□ -0.8
COPS3-215ENST00000578317 SRP68Q9UHB9 627 aaKnown RBP10.04□□□□□ -0.8
COPS3-215ENST00000578317 PCCAP05165 728 aaPredicted RBP10.03□□□□□ -0.8
COPS3-215ENST00000578317 NBPF7P0C2Y1 421 aaPredicted RBP10.03□□□□□ -0.8
COPS3-215ENST00000578317 UBTFL1P0CB47 393 aaPredicted RBP10.03□□□□□ -0.8
COPS3-215ENST00000578317 TM4SF1P30408 202 aa10.03□□□□□ -0.8
COPS3-215ENST00000578317 MCM6Q14566 821 aa10.03□□□□□ -0.8
COPS3-215ENST00000578317 PROX2Q3B8N5 592 aa10.03□□□□□ -0.8
COPS3-215ENST00000578317 RPAP2Q8IXW5 612 aaPredicted RBP10.03□□□□□ -0.8
COPS3-215ENST00000578317 ZBTB38Q8NAP3 1195 aaPredicted RBP10.03□□□□□ -0.8
COPS3-215ENST00000578317 PPP4R2Q9NY27 417 aa10.03□□□□□ -0.8
COPS3-215ENST00000578317 NIP7Q9Y221 180 aaKnown RBP eCLIP10.03□□□□□ -0.8
COPS3-215ENST00000578317 PNPLA7Q6ZV29 1317 aa10.03□□□□□ -0.8
COPS3-215ENST00000578317 PPP1R42Q7Z4L9 355 aa10.02□□□□□ -0.81
COPS3-215ENST00000578317 ZNF687Q8N1G0 1237 aa10.02□□□□□ -0.81
COPS3-215ENST00000578317 PXYLP1Q8TE99 480 aa10.02□□□□□ -0.81
COPS3-215ENST00000578317 SLC16A10Q8TF71 515 aa10.02□□□□□ -0.81
COPS3-215ENST00000578317 SETDB2Q96T68 719 aa10.02□□□□□ -0.81
COPS3-215ENST00000578317 PCDHB15Q9Y5E8 787 aa10.02□□□□□ -0.81
COPS3-215ENST00000578317 SRCAPQ6ZRS2 3230 aa10.02□□□□□ -0.81
COPS3-215ENST00000578317 UBN2Q6ZU65 1347 aa10.02□□□□□ -0.81
COPS3-215ENST00000578317 TAF1LQ8IZX4 1826 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms