RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 DALRD3Q5D0E6 543 aaKnown RBP11.62□□□□□ -0.55
VPS35-211ENST00000569950 VGLL2Q8N8G2 317 aa11.62□□□□□ -0.55
VPS35-211ENST00000569950 BSDC1Q9NW68 430 aaPredicted RBP11.62□□□□□ -0.55
VPS35-211ENST00000569950 MINPP1Q9UNW1 487 aa11.62□□□□□ -0.55
VPS35-211ENST00000569950 SCN9AQ15858 1988 aa11.61□□□□□ -0.55
VPS35-211ENST00000569950 ANKRD18BA2A2Z9 1011 aa11.61□□□□□ -0.55
VPS35-211ENST00000569950 NFKBIEO00221 500 aa11.61□□□□□ -0.55
VPS35-211ENST00000569950 C21orf2O43822 256 aa11.61□□□□□ -0.55
VPS35-211ENST00000569950 BBOX1O75936 387 aa11.61□□□□□ -0.55
VPS35-211ENST00000569950 IFIT5Q13325 482 aaKnown RBP11.61□□□□□ -0.55
VPS35-211ENST00000569950 RPAP2Q8IXW5 612 aaPredicted RBP11.61□□□□□ -0.55
VPS35-211ENST00000569950 SP8Q8IXZ3 490 aa11.61□□□□□ -0.55
VPS35-211ENST00000569950 NOP58Q9Y2X3 529 aaKnown RBP11.61□□□□□ -0.55
VPS35-211ENST00000569950 SNAP23O00161 211 aa11.6□□□□□ -0.55
VPS35-211ENST00000569950 EYA2O00167 538 aa11.6□□□□□ -0.55
VPS35-211ENST00000569950 SASH1O94885 1247 aa11.6□□□□□ -0.55
VPS35-211ENST00000569950 GPSM2P81274 684 aa11.6□□□□□ -0.55
VPS35-211ENST00000569950 ANKRD18AQ8IVF6 992 aa11.6□□□□□ -0.55
VPS35-211ENST00000569950 CDC5LQ99459 802 aaKnown RBP11.6□□□□□ -0.55
VPS35-211ENST00000569950 BCS1LQ9Y276 419 aa11.6□□□□□ -0.55
VPS35-211ENST00000569950 CHMP3Q9Y3E7 222 aa11.6□□□□□ -0.55
VPS35-211ENST00000569950 PSME4Q14997 1843 aa11.6□□□□□ -0.55
VPS35-211ENST00000569950 CIAO1O76071 339 aa11.59□□□□□ -0.55
VPS35-211ENST00000569950 CHRNDQ07001 517 aa11.59□□□□□ -0.55
VPS35-211ENST00000569950 CCDC57Q2TAC2 916 aa11.59□□□□□ -0.55
VPS35-211ENST00000569950 RTFDC1Q9BY42 306 aaPredicted RBP11.59□□□□□ -0.55
VPS35-211ENST00000569950 PODXL2Q9NZ53 605 aa11.59□□□□□ -0.55
VPS35-211ENST00000569950 POLLQ9UGP5 575 aa11.59□□□□□ -0.55
VPS35-211ENST00000569950 HDAC5Q9UQL6 1122 aa11.59□□□□□ -0.55
VPS35-211ENST00000569950 TIAM2Q8IVF5 1701 aa11.58□□□□□ -0.56
VPS35-211ENST00000569950 IGHDP01880 384 aa11.58□□□□□ -0.56
VPS35-211ENST00000569950 AAMPQ13685 434 aa11.58□□□□□ -0.56
VPS35-211ENST00000569950 LDHAL6AQ6ZMR3 332 aa11.58□□□□□ -0.56
VPS35-211ENST00000569950 TMC4Q7Z404 712 aa11.58□□□□□ -0.56
VPS35-211ENST00000569950 HELBQ8NG08 1087 aaPredicted RBP11.58□□□□□ -0.56
VPS35-211ENST00000569950 SIL1Q9H173 461 aa11.58□□□□□ -0.56
VPS35-211ENST00000569950 CHMP4BQ9H444 224 aaKnown RBP11.58□□□□□ -0.56
VPS35-211ENST00000569950 ZNF219Q9P2Y4 722 aaPredicted RBP11.58□□□□□ -0.56
VPS35-211ENST00000569950 FBXO3Q9UK99 471 aa11.58□□□□□ -0.56
VPS35-211ENST00000569950 LTBP3Q9NS15 1303 aa11.58□□□□□ -0.56
VPS35-211ENST00000569950 AKAP11Q9UKA4 1901 aa11.57□□□□□ -0.56
VPS35-211ENST00000569950 TAF5LO75529 589 aa11.57□□□□□ -0.56
VPS35-211ENST00000569950 FGFR2P21802 821 aa11.57□□□□□ -0.56
VPS35-211ENST00000569950 KLRK1P26718 216 aa11.57□□□□□ -0.56
VPS35-211ENST00000569950 RASSF7Q02833 373 aa11.57□□□□□ -0.56
VPS35-211ENST00000569950 HDAC1Q13547 482 aaPredicted RBP11.57□□□□□ -0.56
VPS35-211ENST00000569950 TXNRD3Q86VQ6 643 aa11.57□□□□□ -0.56
VPS35-211ENST00000569950 GPR101Q96P66 508 aaPredicted RBP11.57□□□□□ -0.56
VPS35-211ENST00000569950 DCTPP1Q9H773 170 aa11.57□□□□□ -0.56
VPS35-211ENST00000569950 EXOC6BQ9Y2D4 811 aa11.57□□□□□ -0.56
VPS35-211ENST00000569950 ZNF609O15014 1411 aa11.56□□□□□ -0.56
VPS35-211ENST00000569950 IGHMBP2P38935 993 aaKnown RBP11.56□□□□□ -0.56
VPS35-211ENST00000569950 CCDC93Q567U6 631 aa11.56□□□□□ -0.56
VPS35-211ENST00000569950 CC2D2BQ6DHV5 1058 aa11.56□□□□□ -0.56
VPS35-211ENST00000569950 TBC1D16Q8TBP0 767 aa11.56□□□□□ -0.56
VPS35-211ENST00000569950 PSMD1Q99460 953 aa11.56□□□□□ -0.56
VPS35-211ENST00000569950 XDHP47989 1333 aa11.56□□□□□ -0.56
VPS35-211ENST00000569950 TFCP2Q12800 502 aa11.55□□□□□ -0.56
VPS35-211ENST00000569950 MPHOSPH8Q99549 860 aa11.55□□□□□ -0.56
VPS35-211ENST00000569950 MROH5Q6ZUA9 1318 aa11.55□□□□□ -0.56
VPS35-211ENST00000569950 KDM2BQ8NHM5 1336 aa11.55□□□□□ -0.56
VPS35-211ENST00000569950 MYH13Q9UKX3 1938 aa11.54□□□□□ -0.56
VPS35-211ENST00000569950 SURF6O75683 361 aaKnown RBP11.54□□□□□ -0.56
VPS35-211ENST00000569950 PDE8BO95263 885 aa11.54□□□□□ -0.56
VPS35-211ENST00000569950 IL15P40933 162 aaPredicted RBP11.54□□□□□ -0.56
VPS35-211ENST00000569950 FKBP4Q02790 459 aaKnown RBP eCLIP11.54□□□□□ -0.56
VPS35-211ENST00000569950 C15orf52Q6ZUT6 534 aaKnown RBP11.54□□□□□ -0.56
VPS35-211ENST00000569950 SMC5Q8IY18 1101 aa11.54□□□□□ -0.56
VPS35-211ENST00000569950 MPNDQ8N594 471 aa11.54□□□□□ -0.56
VPS35-211ENST00000569950 CNNM1Q9NRU3 951 aa11.54□□□□□ -0.56
VPS35-211ENST00000569950 NSFL1CQ9UNZ2 370 aaKnown RBP11.54□□□□□ -0.56
VPS35-211ENST00000569950 MYO5AQ9Y4I1 1855 aaKnown RBP11.54□□□□□ -0.56
VPS35-211ENST00000569950 MED23Q9ULK4 1368 aa11.54□□□□□ -0.56
VPS35-211ENST00000569950 COL1A1P02452 1464 aaPredicted RBP11.53□□□□□ -0.56
VPS35-211ENST00000569950 TAF7LQ5H9L4 462 aa11.53□□□□□ -0.56
VPS35-211ENST00000569950 DPP8Q6V1X1 898 aaPredicted RBP11.53□□□□□ -0.56
VPS35-211ENST00000569950 RTKN2Q8IZC4 609 aa11.53□□□□□ -0.56
VPS35-211ENST00000569950 ZNF277Q9NRM2 450 aaPredicted RBP11.53□□□□□ -0.56
VPS35-211ENST00000569950 ZNF804BA4D1E1 1349 aa11.53□□□□□ -0.56
VPS35-211ENST00000569950 HMMRO75330 724 aa11.52□□□□□ -0.57
VPS35-211ENST00000569950 UFL1O94874 794 aa11.52□□□□□ -0.57
VPS35-211ENST00000569950 ADORA1P30542 326 aa11.52□□□□□ -0.57
VPS35-211ENST00000569950 KIAA2012Q0VF49 1180 aa11.52□□□□□ -0.57
VPS35-211ENST00000569950 GPR162Q16538 588 aa11.52□□□□□ -0.57
VPS35-211ENST00000569950 GRIPAP1Q4V328 841 aa11.52□□□□□ -0.57
VPS35-211ENST00000569950 METTL24Q5JXM2 366 aa11.52□□□□□ -0.57
VPS35-211ENST00000569950 SOGA3Q5TF21 947 aa11.52□□□□□ -0.57
VPS35-211ENST00000569950 RHPN1Q8TCX5 695 aa11.52□□□□□ -0.57
VPS35-211ENST00000569950 EAF2Q96CJ1 260 aaPredicted RBP11.52□□□□□ -0.57
VPS35-211ENST00000569950 ANKRD2Q9GZV1 360 aa11.52□□□□□ -0.57
VPS35-211ENST00000569950 TAOK3Q9H2K8 898 aa11.52□□□□□ -0.57
VPS35-211ENST00000569950 TLR7Q9NYK1 1049 aaKnown RBP11.52□□□□□ -0.57
VPS35-211ENST00000569950 LEMD3Q9Y2U8 911 aa11.52□□□□□ -0.57
VPS35-211ENST00000569950 SALL3Q9BXA9 1300 aa11.52□□□□□ -0.57
VPS35-211ENST00000569950 YDJCA8MPS7 323 aa11.51□□□□□ -0.57
VPS35-211ENST00000569950 ATP2B4P23634 1241 aa11.51□□□□□ -0.57
VPS35-211ENST00000569950 UBE4AQ14139 1066 aa11.51□□□□□ -0.57
VPS35-211ENST00000569950 AOC3Q16853 763 aa11.51□□□□□ -0.57
VPS35-211ENST00000569950 TNNI3KQ59H18 835 aa11.51□□□□□ -0.57
VPS35-211ENST00000569950 ARHGAP27Q6ZUM4 889 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms