RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 RIPOR2Q9Y4F9 1068 aa8.54□□□□□ -1.04
SMG1-215ENST00000568239 HIP1O00291 1037 aa8.54□□□□□ -1.04
SMG1-215ENST00000568239 RBM6P78332 1123 aaKnown RBP8.54□□□□□ -1.04
SMG1-215ENST00000568239 ATP2B3Q16720 1220 aa8.54□□□□□ -1.04
SMG1-215ENST00000568239 NBPF5PQ86XG9 351 aaPredicted RBP8.54□□□□□ -1.04
SMG1-215ENST00000568239 KLHL34Q8N239 644 aa8.54□□□□□ -1.04
SMG1-215ENST00000568239 ST18O60284 1047 aa8.53□□□□□ -1.04
SMG1-215ENST00000568239 CHGBP05060 677 aa8.53□□□□□ -1.04
SMG1-215ENST00000568239 IGHMBP2P38935 993 aaKnown RBP8.53□□□□□ -1.04
SMG1-215ENST00000568239 NEK4P51957 841 aa8.53□□□□□ -1.04
SMG1-215ENST00000568239 SNX21Q969T3 373 aa8.53□□□□□ -1.04
SMG1-215ENST00000568239 HAUS7Q99871 368 aa8.53□□□□□ -1.04
SMG1-215ENST00000568239 BCL2L12Q9HB09 334 aa8.53□□□□□ -1.04
SMG1-215ENST00000568239 PAG1Q9NWQ8 432 aa8.53□□□□□ -1.04
SMG1-215ENST00000568239 ZNF609O15014 1411 aa8.53□□□□□ -1.04
SMG1-215ENST00000568239 A0A0D9SFI3 127 aa8.53□□□□□ -1.04
SMG1-215ENST00000568239 K7ELQ4 463 aaPredicted RBP8.53□□□□□ -1.04
SMG1-215ENST00000568239 TAF5LO75529 589 aa8.53□□□□□ -1.04
SMG1-215ENST00000568239 NOL8Q76FK4 1167 aaKnown RBP8.53□□□□□ -1.04
SMG1-215ENST00000568239 RREB1Q92766 1687 aa8.53□□□□□ -1.04
SMG1-215ENST00000568239 PTH1RQ03431 593 aa8.52□□□□□ -1.04
SMG1-215ENST00000568239 BRWD3Q6RI45 1802 aa8.52□□□□□ -1.04
SMG1-215ENST00000568239 UPF3BQ9BZI7 483 aaKnown RBP8.52□□□□□ -1.04
SMG1-215ENST00000568239 RAD50Q92878 1312 aa8.52□□□□□ -1.05
SMG1-215ENST00000568239 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.52□□□□□ -1.05
SMG1-215ENST00000568239 SNAP23O00161 211 aa8.52□□□□□ -1.05
SMG1-215ENST00000568239 PDE8BO95263 885 aa8.52□□□□□ -1.05
SMG1-215ENST00000568239 LSG1Q9H089 658 aaKnown RBP8.52□□□□□ -1.05
SMG1-215ENST00000568239 CICQ96RK0 1608 aaPredicted RBP8.52□□□□□ -1.05
SMG1-215ENST00000568239 PRPF40BQ6NWY9 871 aaKnown RBP8.52□□□□□ -1.05
SMG1-215ENST00000568239 TPTE2Q6XPS3 522 aa8.52□□□□□ -1.05
SMG1-215ENST00000568239 CNKSR2Q8WXI2 1034 aa8.52□□□□□ -1.05
SMG1-215ENST00000568239 ANTXR1Q9H6X2 564 aa8.52□□□□□ -1.05
SMG1-215ENST00000568239 ZNF831Q5JPB2 1677 aa8.51□□□□□ -1.05
SMG1-215ENST00000568239 MROH5Q6ZUA9 1318 aa8.51□□□□□ -1.05
SMG1-215ENST00000568239 RXRBP28702 533 aa8.51□□□□□ -1.05
SMG1-215ENST00000568239 HSPA4P34932 840 aa8.51□□□□□ -1.05
SMG1-215ENST00000568239 SLFNL1Q499Z3 407 aa8.51□□□□□ -1.05
SMG1-215ENST00000568239 C3orf67Q6ZVT6 689 aa8.51□□□□□ -1.05
SMG1-215ENST00000568239 HOMEZQ8IX15 550 aa8.51□□□□□ -1.05
SMG1-215ENST00000568239 KBTBD3Q8NAB2 608 aa8.51□□□□□ -1.05
SMG1-215ENST00000568239 SEC62Q99442 399 aaKnown RBP8.51□□□□□ -1.05
SMG1-215ENST00000568239 NYXQ9GZU5 481 aa8.51□□□□□ -1.05
SMG1-215ENST00000568239 RIC1Q4ADV7 1423 aa8.51□□□□□ -1.05
SMG1-215ENST00000568239 CCDC171Q6TFL3 1326 aa8.51□□□□□ -1.05
SMG1-215ENST00000568239 PI16Q6UXB8 463 aa8.51□□□□□ -1.05
SMG1-215ENST00000568239 CCDC129Q6ZRS4 1044 aa8.51□□□□□ -1.05
SMG1-215ENST00000568239 ZNF589Q86UQ0 364 aaPredicted RBP8.51□□□□□ -1.05
SMG1-215ENST00000568239 NLRP3Q96P20 1036 aa8.51□□□□□ -1.05
SMG1-215ENST00000568239 CDC5LQ99459 802 aaKnown RBP8.51□□□□□ -1.05
SMG1-215ENST00000568239 TAF1LQ8IZX4 1826 aa8.5□□□□□ -1.05
SMG1-215ENST00000568239 ANAPC15P60006 121 aa8.5□□□□□ -1.05
SMG1-215ENST00000568239 SCARF1Q14162 830 aa8.5□□□□□ -1.05
SMG1-215ENST00000568239 PUM3Q15397 648 aaKnown RBP8.5□□□□□ -1.05
SMG1-215ENST00000568239 ANKRD18AQ8IVF6 992 aa8.5□□□□□ -1.05
SMG1-215ENST00000568239 LY75O60449 1722 aa8.5□□□□□ -1.05
SMG1-215ENST00000568239 BCORQ6W2J9 1755 aa8.5□□□□□ -1.05
SMG1-215ENST00000568239 C4BP0C0L5 1744 aa8.5□□□□□ -1.05
SMG1-215ENST00000568239 APBA3O96018 575 aa8.5□□□□□ -1.05
SMG1-215ENST00000568239 ZAP70P43403 619 aa8.5□□□□□ -1.05
SMG1-215ENST00000568239 TXNRD1Q16881 649 aa8.5□□□□□ -1.05
SMG1-215ENST00000568239 RASEFQ8IZ41 740 aa8.5□□□□□ -1.05
SMG1-215ENST00000568239 VGLL2Q8N8G2 317 aa8.5□□□□□ -1.05
SMG1-215ENST00000568239 LPIN2Q92539 896 aa8.5□□□□□ -1.05
SMG1-215ENST00000568239 RBM8AQ9Y5S9 174 aaKnown RBP8.5□□□□□ -1.05
SMG1-215ENST00000568239 SNX14Q9Y5W7 946 aa8.5□□□□□ -1.05
SMG1-215ENST00000568239 ABCC12Q96J65 1359 aa8.5□□□□□ -1.05
SMG1-215ENST00000568239 SLC5A1P13866 664 aa8.49□□□□□ -1.05
SMG1-215ENST00000568239 ZKSCAN1P17029 563 aaPredicted RBP8.49□□□□□ -1.05
SMG1-215ENST00000568239 WASHC4Q2M389 1173 aa8.49□□□□□ -1.05
SMG1-215ENST00000568239 SLC27A3Q5K4L6 730 aa8.49□□□□□ -1.05
SMG1-215ENST00000568239 DDX60Q8IY21 1712 aaKnown RBP8.49□□□□□ -1.05
SMG1-215ENST00000568239 PHKA1P46020 1223 aa8.49□□□□□ -1.05
SMG1-215ENST00000568239 CHRNDQ07001 517 aa8.49□□□□□ -1.05
SMG1-215ENST00000568239 NFIXQ14938 502 aa8.49□□□□□ -1.05
SMG1-215ENST00000568239 NFKBIBQ15653 356 aa8.49□□□□□ -1.05
SMG1-215ENST00000568239 MCMDC2Q4G0Z9 681 aa8.49□□□□□ -1.05
SMG1-215ENST00000568239 CCDC102BQ68D86 513 aa8.49□□□□□ -1.05
SMG1-215ENST00000568239 TFCP2L1Q9NZI6 479 aa8.49□□□□□ -1.05
SMG1-215ENST00000568239 TAF1P21675 1872 aa8.49□□□□□ -1.05
SMG1-215ENST00000568239 EPB41L2O43491 1005 aaKnown RBP8.49□□□□□ -1.05
SMG1-215ENST00000568239 MCAMP43121 646 aa8.49□□□□□ -1.05
SMG1-215ENST00000568239 CELF1Q92879 486 aaKnown RBP8.49□□□□□ -1.05
SMG1-215ENST00000568239 SPEF2Q9C093 1822 aa8.49□□□□□ -1.05
SMG1-215ENST00000568239 IDH1O75874 414 aaKnown RBP8.48□□□□□ -1.05
SMG1-215ENST00000568239 CPA1P15085 419 aa8.48□□□□□ -1.05
SMG1-215ENST00000568239 CASTP20810 708 aaKnown RBP8.48□□□□□ -1.05
SMG1-215ENST00000568239 SF3B3Q15393 1217 aaKnown RBP8.48□□□□□ -1.05
SMG1-215ENST00000568239 CNBD1Q8NA66 436 aa8.48□□□□□ -1.05
SMG1-215ENST00000568239 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.48□□□□□ -1.05
SMG1-215ENST00000568239 JAKMIP1Q96N16 626 aaKnown RBP8.48□□□□□ -1.05
SMG1-215ENST00000568239 CHMP5Q9NZZ3 219 aa8.48□□□□□ -1.05
SMG1-215ENST00000568239 FRAT2O75474 233 aaPredicted RBP8.48□□□□□ -1.05
SMG1-215ENST00000568239 LRRFIP1Q32MZ4 808 aaKnown RBP8.48□□□□□ -1.05
SMG1-215ENST00000568239 RNF20Q5VTR2 975 aa8.48□□□□□ -1.05
SMG1-215ENST00000568239 CREB3L3Q68CJ9 461 aa8.48□□□□□ -1.05
SMG1-215ENST00000568239 PROM2Q8N271 834 aa8.48□□□□□ -1.05
SMG1-215ENST00000568239 MAP4K1Q92918 833 aa8.48□□□□□ -1.05
SMG1-215ENST00000568239 LARP6Q9BRS8 491 aaKnown RBP8.48□□□□□ -1.05
SMG1-215ENST00000568239 SCN7AQ01118 1682 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms