RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	ANGEL1	Q9UNK9	670 aa	Known RBP	4.69	□□□□□ -1.66
SPG11-223	ENST00000560858	RTCB	Q9Y3I0	505 aa	Known RBP	4.69	□□□□□ -1.66
SPG11-223	ENST00000560858	LINC01387	J3KSC0	135 aa		4.68	□□□□□ -1.66
SPG11-223	ENST00000560858	ATP9B	O43861	1147 aa		4.68	□□□□□ -1.66
SPG11-223	ENST00000560858	RASA1	P20936	1047 aa		4.68	□□□□□ -1.66
SPG11-223	ENST00000560858	SOX18	P35713	384 aa		4.68	□□□□□ -1.66
SPG11-223	ENST00000560858	DGKZ	Q13574	1117 aa		4.68	□□□□□ -1.66
SPG11-223	ENST00000560858	ABI1	Q8IZP0	508 aa		4.68	□□□□□ -1.66
SPG11-223	ENST00000560858	POU5F2	Q8N7G0	328 aa		4.68	□□□□□ -1.66
SPG11-223	ENST00000560858	FAM46A	Q96IP4	442 aa	Known RBP	4.68	□□□□□ -1.66
SPG11-223	ENST00000560858	NSUN5	Q96P11	429 aa	Known RBP	4.68	□□□□□ -1.66
SPG11-223	ENST00000560858	KCNF1	Q9H3M0	494 aa		4.68	□□□□□ -1.66
SPG11-223	ENST00000560858	COG6	Q9Y2V7	657 aa		4.68	□□□□□ -1.66
SPG11-223	ENST00000560858	IGFBP4	P22692	258 aa		4.67	□□□□□ -1.66
SPG11-223	ENST00000560858	DUOXA2	Q1HG44	320 aa		4.67	□□□□□ -1.66
SPG11-223	ENST00000560858	C11orf91	Q3C1V1	193 aa		4.67	□□□□□ -1.66
SPG11-223	ENST00000560858	FAM117B	Q6P1L5	589 aa		4.67	□□□□□ -1.66
SPG11-223	ENST00000560858	BEND4	Q6ZU67	534 aa		4.67	□□□□□ -1.66
SPG11-223	ENST00000560858	FAM20C	Q8IXL6	584 aa		4.67	□□□□□ -1.66
SPG11-223	ENST00000560858	CMTR1	Q8N1G2	835 aa	Known RBP	4.67	□□□□□ -1.66
SPG11-223	ENST00000560858	GALNT11	Q8NCW6	608 aa		4.67	□□□□□ -1.66
SPG11-223	ENST00000560858	KRTAP4-2	Q9BYR5	136 aa		4.67	□□□□□ -1.66
SPG11-223	ENST00000560858	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	4.67	□□□□□ -1.66
SPG11-223	ENST00000560858	TRIM33	Q9UPN9	1127 aa		4.67	□□□□□ -1.66
SPG11-223	ENST00000560858	FAM177B	A6PVY3	158 aa		4.66	□□□□□ -1.66
SPG11-223	ENST00000560858	WDR64	B1ANS9	1081 aa		4.66	□□□□□ -1.66
SPG11-223	ENST00000560858	MMP20	O60882	483 aa		4.66	□□□□□ -1.66
SPG11-223	ENST00000560858	DKK1	O94907	266 aa		4.66	□□□□□ -1.66
SPG11-223	ENST00000560858	BMP3	P12645	472 aa		4.66	□□□□□ -1.66
SPG11-223	ENST00000560858	MCM6	Q14566	821 aa		4.66	□□□□□ -1.66
SPG11-223	ENST00000560858	KLHL23	Q8NBE8	558 aa		4.66	□□□□□ -1.66
SPG11-223	ENST00000560858	VTI1A	Q96AJ9	217 aa		4.66	□□□□□ -1.66
SPG11-223	ENST00000560858	SPACA7	Q96KW9	195 aa		4.66	□□□□□ -1.66
SPG11-223	ENST00000560858	FBXL18	Q96ME1	805 aa		4.66	□□□□□ -1.66
SPG11-223	ENST00000560858	ATG3	Q9NT62	314 aa		4.66	□□□□□ -1.66
SPG11-223	ENST00000560858	PIM2	Q9P1W9	311 aa		4.66	□□□□□ -1.66
SPG11-223	ENST00000560858	OPLAH	O14841	1288 aa		4.65	□□□□□ -1.67
SPG11-223	ENST00000560858	RAD21	O60216	631 aa		4.65	□□□□□ -1.67
SPG11-223	ENST00000560858	SMNDC1	O75940	238 aa	Known RBP eCLIP	4.65	□□□□□ -1.67
SPG11-223	ENST00000560858	WISP1	O95388	367 aa		4.65	□□□□□ -1.67
SPG11-223	ENST00000560858	HOXD8	P13378	290 aa	Predicted RBP	4.65	□□□□□ -1.67
SPG11-223	ENST00000560858	JUNB	P17275	347 aa	Predicted RBP	4.65	□□□□□ -1.67
SPG11-223	ENST00000560858	HDGFL1	Q5TGJ6	251 aa		4.65	□□□□□ -1.67
SPG11-223	ENST00000560858	LARP1	Q6PKG0	1096 aa	Known RBP	4.65	□□□□□ -1.67
SPG11-223	ENST00000560858	KIAA1211	Q6ZU35	1233 aa		4.65	□□□□□ -1.67
SPG11-223	ENST00000560858	RGL4	Q8IZJ4	473 aa		4.65	□□□□□ -1.67
SPG11-223	ENST00000560858	LEMD3	Q9Y2U8	911 aa		4.65	□□□□□ -1.67
SPG11-223	ENST00000560858	CDC27	P30260	824 aa		4.64	□□□□□ -1.67
SPG11-223	ENST00000560858	ANKRD34A	Q69YU3	496 aa		4.64	□□□□□ -1.67
SPG11-223	ENST00000560858	TP53INP2	Q8IXH6	220 aa		4.64	□□□□□ -1.67
SPG11-223	ENST00000560858	USP20	Q9Y2K6	914 aa		4.64	□□□□□ -1.67
SPG11-223	ENST00000560858	HIF3A	Q9Y2N7	669 aa		4.64	□□□□□ -1.67
SPG11-223	ENST00000560858	FSCN2	O14926	492 aa		4.63	□□□□□ -1.67
SPG11-223	ENST00000560858	CDC25B	P30305	580 aa		4.63	□□□□□ -1.67
SPG11-223	ENST00000560858	HOXA10	P31260	410 aa	Predicted RBP	4.63	□□□□□ -1.67
SPG11-223	ENST00000560858	CEP135	Q66GS9	1140 aa		4.63	□□□□□ -1.67
SPG11-223	ENST00000560858	TXNDC11	Q6PKC3	985 aa		4.63	□□□□□ -1.67
SPG11-223	ENST00000560858	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	4.63	□□□□□ -1.67
SPG11-223	ENST00000560858	LACRT	Q9GZZ8	138 aa		4.63	□□□□□ -1.67
SPG11-223	ENST00000560858	KCNK4	Q9NYG8	393 aa		4.63	□□□□□ -1.67
SPG11-223	ENST00000560858	CCDC39	Q9UFE4	941 aa		4.63	□□□□□ -1.67
SPG11-223	ENST00000560858	FOSL1	P15407	271 aa		4.62	□□□□□ -1.67
SPG11-223	ENST00000560858	HYAL2	Q12891	473 aa		4.62	□□□□□ -1.67
SPG11-223	ENST00000560858	CPSF6	Q16630	551 aa	Known RBP eCLIP	4.62	□□□□□ -1.67
SPG11-223	ENST00000560858	FDX2	Q6P4F2	183 aa		4.62	□□□□□ -1.67
SPG11-223	ENST00000560858	CBLL1	Q75N03	491 aa		4.62	□□□□□ -1.67
SPG11-223	ENST00000560858	NLRP13	Q86W25	1043 aa		4.62	□□□□□ -1.67
SPG11-223	ENST00000560858	TREML1	Q86YW5	311 aa		4.62	□□□□□ -1.67
SPG11-223	ENST00000560858	MYO19	Q96H55	970 aa		4.62	□□□□□ -1.67
SPG11-223	ENST00000560858	MFSD14A	Q96MC6	490 aa		4.62	□□□□□ -1.67
SPG11-223	ENST00000560858	UCN2	Q96RP3	112 aa		4.62	□□□□□ -1.67
SPG11-223	ENST00000560858	CARD10	Q9BWT7	1032 aa		4.62	□□□□□ -1.67
SPG11-223	ENST00000560858	OSBPL1A	Q9BXW6	950 aa		4.62	□□□□□ -1.67
SPG11-223	ENST00000560858	RNF208	Q9H0X6	261 aa		4.62	□□□□□ -1.67
SPG11-223	ENST00000560858	QTRT2	Q9H974	415 aa	Known RBP	4.62	□□□□□ -1.67
SPG11-223	ENST00000560858	SEC31B	Q9NQW1	1179 aa		4.62	□□□□□ -1.67
SPG11-223	ENST00000560858	FOXO3	O43524	673 aa		4.61	□□□□□ -1.67
SPG11-223	ENST00000560858	GAS2	O43903	313 aa	Known RBP	4.61	□□□□□ -1.67
SPG11-223	ENST00000560858	LGR5	O75473	907 aa		4.61	□□□□□ -1.67
SPG11-223	ENST00000560858	PRNP	P04156	253 aa		4.61	□□□□□ -1.67
SPG11-223	ENST00000560858	ITGB5	P18084	799 aa		4.61	□□□□□ -1.67
SPG11-223	ENST00000560858	DPYD	Q12882	1025 aa		4.61	□□□□□ -1.67
SPG11-223	ENST00000560858	VSIG10L	Q86VR7	867 aa		4.61	□□□□□ -1.67
SPG11-223	ENST00000560858	FBXL6	Q8N531	539 aa		4.61	□□□□□ -1.67
SPG11-223	ENST00000560858	AGBL5	Q8NDL9	886 aa		4.61	□□□□□ -1.67
SPG11-223	ENST00000560858	KCNMB2	Q9Y691	235 aa		4.61	□□□□□ -1.67
SPG11-223	ENST00000560858	DDX3Y	O15523	660 aa	Known RBP	4.6	□□□□□ -1.67
SPG11-223	ENST00000560858	RXRB	P28702	533 aa		4.6	□□□□□ -1.67
SPG11-223	ENST00000560858	SCNN1A	P37088	669 aa		4.6	□□□□□ -1.67
SPG11-223	ENST00000560858	FBLN7	Q53RD9	439 aa		4.6	□□□□□ -1.67
SPG11-223	ENST00000560858	OR13H1	Q8NG92	308 aa		4.6	□□□□□ -1.67
SPG11-223	ENST00000560858	ADAMTS19	Q8TE59	1207 aa		4.6	□□□□□ -1.67
SPG11-223	ENST00000560858	METTL22	Q9BUU2	404 aa	Predicted RBP	4.6	□□□□□ -1.67
SPG11-223	ENST00000560858	DBX1	A6NMT0	343 aa		4.59	□□□□□ -1.67
SPG11-223	ENST00000560858	POM121C	A8CG34	1229 aa		4.59	□□□□□ -1.67
SPG11-223	ENST00000560858	PTPRA	P18433	802 aa		4.59	□□□□□ -1.67
SPG11-223	ENST00000560858	MAP4	P27816	1152 aa	Known RBP	4.59	□□□□□ -1.67
SPG11-223	ENST00000560858	PREP	P48147	710 aa		4.59	□□□□□ -1.67
SPG11-223	ENST00000560858	CABP4	P57796	275 aa		4.59	□□□□□ -1.67
SPG11-223	ENST00000560858	MSMP	Q1L6U9	139 aa		4.59	□□□□□ -1.67

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