RNA–Protein interactions for RNA: ENST00000558253.5

SPG11-209, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 879 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-209ENST00000558253 PA2G4Q9UQ80 394 aaKnown RBP9.95□□□□□ -0.82
SPG11-209ENST00000558253 SMC3Q9UQE7 1217 aa9.95□□□□□ -0.82
SPG11-209ENST00000558253 FPGT-TNNI3KV9GXZ4 949 aa9.95□□□□□ -0.82
SPG11-209ENST00000558253 COL5A2P05997 1499 aaPredicted RBP9.95□□□□□ -0.82
SPG11-209ENST00000558253 STRCP1A6NGW2 1772 aa9.95□□□□□ -0.82
SPG11-209ENST00000558253 LAMB4A4D0S4 1761 aa9.94□□□□□ -0.82
SPG11-209ENST00000558253 TNS2Q63HR2 1409 aa9.94□□□□□ -0.82
SPG11-209ENST00000558253 JCADQ9P266 1359 aa9.94□□□□□ -0.82
SPG11-209ENST00000558253 MAP4K4O95819 1239 aaPredicted RBP9.94□□□□□ -0.82
SPG11-209ENST00000558253 CASTP20810 708 aaKnown RBP9.94□□□□□ -0.82
SPG11-209ENST00000558253 KCNJ4P48050 445 aa9.94□□□□□ -0.82
SPG11-209ENST00000558253 ZSCAN23Q3MJ62 389 aa9.94□□□□□ -0.82
SPG11-209ENST00000558253 PPP1R15BQ5SWA1 713 aa9.94□□□□□ -0.82
SPG11-209ENST00000558253 USPL1Q5W0Q7 1092 aa9.94□□□□□ -0.82
SPG11-209ENST00000558253 SPNS2Q8IVW8 549 aa9.94□□□□□ -0.82
SPG11-209ENST00000558253 TRIM44Q96DX7 344 aaPredicted RBP9.94□□□□□ -0.82
SPG11-209ENST00000558253 DDX27Q96GQ7 796 aaKnown RBP9.94□□□□□ -0.82
SPG11-209ENST00000558253 HAUS7Q99871 368 aa9.94□□□□□ -0.82
SPG11-209ENST00000558253 UPF3BQ9BZI7 483 aaKnown RBP9.94□□□□□ -0.82
SPG11-209ENST00000558253 MED23Q9ULK4 1368 aa9.93□□□□□ -0.82
SPG11-209ENST00000558253 FAM205CA6NFA0 338 aa9.93□□□□□ -0.82
SPG11-209ENST00000558253 RIMBP2O15034 1052 aa9.93□□□□□ -0.82
SPG11-209ENST00000558253 STARD3NLO95772 234 aa9.93□□□□□ -0.82
SPG11-209ENST00000558253 ZSCAN22P10073 491 aaPredicted RBP9.93□□□□□ -0.82
SPG11-209ENST00000558253 NASPP49321 788 aaPredicted RBP9.93□□□□□ -0.82
SPG11-209ENST00000558253 AK2P54819 239 aa9.93□□□□□ -0.82
SPG11-209ENST00000558253 HSP90AB3PQ58FF7 597 aa9.93□□□□□ -0.82
SPG11-209ENST00000558253 CREB3L3Q68CJ9 461 aa9.93□□□□□ -0.82
SPG11-209ENST00000558253 PRPF40BQ6NWY9 871 aaKnown RBP9.93□□□□□ -0.82
SPG11-209ENST00000558253 UBE3BQ7Z3V4 1068 aa9.93□□□□□ -0.82
SPG11-209ENST00000558253 DDX17Q92841 729 aaKnown RBP9.93□□□□□ -0.82
SPG11-209ENST00000558253 JAKMIP1Q96N16 626 aaKnown RBP9.93□□□□□ -0.82
SPG11-209ENST00000558253 PPP1R9BQ96SB3 815 aa9.93□□□□□ -0.82
SPG11-209ENST00000558253 CCDC8Q9H0W5 538 aaPredicted RBP9.93□□□□□ -0.82
SPG11-209ENST00000558253 HELLSQ9NRZ9 838 aa9.93□□□□□ -0.82
SPG11-209ENST00000558253 AKAP2Q9Y2D5 859 aa9.93□□□□□ -0.82
SPG11-209ENST00000558253 RBM8AQ9Y5S9 174 aaKnown RBP9.93□□□□□ -0.82
SPG11-209ENST00000558253 AK9Q5TCS8 1911 aa9.92□□□□□ -0.82
SPG11-209ENST00000558253 RPAP1Q9BWH6 1393 aaPredicted RBP9.92□□□□□ -0.82
SPG11-209ENST00000558253 POTEB3A0JP26 581 aa9.92□□□□□ -0.82
SPG11-209ENST00000558253 STX6O43752 255 aa9.92□□□□□ -0.82
SPG11-209ENST00000558253 FOXO4P98177 505 aa9.92□□□□□ -0.82
SPG11-209ENST00000558253 PTH1RQ03431 593 aa9.92□□□□□ -0.82
SPG11-209ENST00000558253 NMIQ13287 307 aaPredicted RBP9.92□□□□□ -0.82
SPG11-209ENST00000558253 PKP1Q13835 747 aa9.92□□□□□ -0.82
SPG11-209ENST00000558253 MCMDC2Q4G0Z9 681 aa9.92□□□□□ -0.82
SPG11-209ENST00000558253 EPHA10Q5JZY3 1008 aa9.92□□□□□ -0.82
SPG11-209ENST00000558253 BLOC1S2Q6QNY1 142 aa9.92□□□□□ -0.82
SPG11-209ENST00000558253 POTEBQ6S5H4 581 aa9.92□□□□□ -0.82
SPG11-209ENST00000558253 ZNF710Q8N1W2 664 aa9.92□□□□□ -0.82
SPG11-209ENST00000558253 FAM184AQ8NB25 1140 aa9.92□□□□□ -0.82
SPG11-209ENST00000558253 HS3ST6Q96QI5 342 aa9.92□□□□□ -0.82
SPG11-209ENST00000558253 CDCA7Q9BWT1 371 aaPredicted RBP9.92□□□□□ -0.82
SPG11-209ENST00000558253 PLA2G12BQ9BX93 195 aa9.92□□□□□ -0.82
SPG11-209ENST00000558253 BOLA2Q9H3K6 86 aa9.92□□□□□ -0.82
SPG11-209ENST00000558253 TMOD3Q9NYL9 352 aa9.92□□□□□ -0.82
SPG11-209ENST00000558253 C5P01031 1676 aa9.92□□□□□ -0.82
SPG11-209ENST00000558253 ABCC12Q96J65 1359 aa9.91□□□□□ -0.82
SPG11-209ENST00000558253 SH3TC1Q8TE82 1336 aa9.91□□□□□ -0.82
SPG11-209ENST00000558253 NBPF26B4DH59 902 aa9.91□□□□□ -0.82
SPG11-209ENST00000558253 EYA2O00167 538 aa9.91□□□□□ -0.82
SPG11-209ENST00000558253 SLC27A2O14975 620 aa9.91□□□□□ -0.82
SPG11-209ENST00000558253 TAF5LO75529 589 aa9.91□□□□□ -0.82
SPG11-209ENST00000558253 ZFYP08048 801 aaPredicted RBP9.91□□□□□ -0.82
SPG11-209ENST00000558253 TFCP2Q12800 502 aa9.91□□□□□ -0.82
SPG11-209ENST00000558253 MMRN1Q13201 1228 aa9.91□□□□□ -0.82
SPG11-209ENST00000558253 TCIRG1Q13488 830 aa9.91□□□□□ -0.82
SPG11-209ENST00000558253 NBPF14Q5TI25 921 aa9.91□□□□□ -0.82
SPG11-209ENST00000558253 CAVIN1Q6NZI2 390 aaKnown RBP9.91□□□□□ -0.82
SPG11-209ENST00000558253 NBPF10Q6P3W6 841 aaKnown RBP9.91□□□□□ -0.82
SPG11-209ENST00000558253 LRSAM1Q6UWE0 723 aa9.91□□□□□ -0.82
SPG11-209ENST00000558253 LMBR1LQ6UX01 489 aa9.91□□□□□ -0.82
SPG11-209ENST00000558253 KIF6Q6ZMV9 814 aa9.91□□□□□ -0.82
SPG11-209ENST00000558253 NBPF15Q8N660 670 aa9.91□□□□□ -0.82
SPG11-209ENST00000558253 KBTBD3Q8NAB2 608 aa9.91□□□□□ -0.82
SPG11-209ENST00000558253 ISCA1Q9BUE6 129 aa9.91□□□□□ -0.82
SPG11-209ENST00000558253 SIL1Q9H173 461 aa9.91□□□□□ -0.82
SPG11-209ENST00000558253 IL25Q9H293 177 aa9.91□□□□□ -0.82
SPG11-209ENST00000558253 PALLDQ8WX93 1383 aa9.9□□□□□ -0.82
SPG11-209ENST00000558253 SYT1P21579 422 aa9.9□□□□□ -0.82
SPG11-209ENST00000558253 RPS6KB1P23443 525 aa9.9□□□□□ -0.82
SPG11-209ENST00000558253 UBE2HP62256 183 aa9.9□□□□□ -0.82
SPG11-209ENST00000558253 UVSSAQ2YD98 709 aa9.9□□□□□ -0.82
SPG11-209ENST00000558253 GPR153Q6NV75 609 aa9.9□□□□□ -0.82
SPG11-209ENST00000558253 GAS2L3Q86XJ1 694 aa9.9□□□□□ -0.82
SPG11-209ENST00000558253 GPT2Q8TD30 523 aa9.9□□□□□ -0.82
SPG11-209ENST00000558253 PTCD2Q8WV60 388 aaKnown RBP9.9□□□□□ -0.82
SPG11-209ENST00000558253 DSCC1Q9BVC3 393 aa9.9□□□□□ -0.82
SPG11-209ENST00000558253 DBNLQ9UJU6 430 aaKnown RBP9.9□□□□□ -0.82
SPG11-209ENST00000558253 KIF3AQ9Y496 699 aa9.9□□□□□ -0.82
SPG11-209ENST00000558253 KCPQ6ZWJ8 1503 aa9.9□□□□□ -0.82
SPG11-209ENST00000558253 UBR2Q8IWV8 1755 aa9.9□□□□□ -0.82
SPG11-209ENST00000558253 PAPPAQ13219 1627 aa9.89□□□□□ -0.83
SPG11-209ENST00000558253 CDHR2Q9BYE9 1310 aa9.89□□□□□ -0.83
SPG11-209ENST00000558253 ATP5J2-PTCD1G3V325 749 aa9.89□□□□□ -0.83
SPG11-209ENST00000558253 PTCD1O75127 700 aaKnown RBP9.89□□□□□ -0.83
SPG11-209ENST00000558253 F13A1P00488 732 aa9.89□□□□□ -0.83
SPG11-209ENST00000558253 PCCAP05165 728 aaPredicted RBP9.89□□□□□ -0.83
SPG11-209ENST00000558253 HSP90B1P14625 803 aaKnown RBP9.89□□□□□ -0.83
SPG11-209ENST00000558253 HOXB1P14653 301 aaPredicted RBP9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms