RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 TTLL11Q8NHH1 800 aa20.86■□□□□ 0.93
VPS29-207ENST00000549970 CDC5LQ99459 802 aaKnown RBP20.86■□□□□ 0.93
VPS29-207ENST00000549970 GREM2Q9H772 168 aa20.86■□□□□ 0.93
VPS29-207ENST00000549970 GGA1Q9UJY5 639 aa20.86■□□□□ 0.93
VPS29-207ENST00000549970 CNTNAP1P78357 1384 aa20.85■□□□□ 0.93
VPS29-207ENST00000549970 H7C1W4 665 aa20.85■□□□□ 0.93
VPS29-207ENST00000549970 PSMD14O00487 310 aa20.85■□□□□ 0.93
VPS29-207ENST00000549970 GCKRQ14397 625 aa20.85■□□□□ 0.93
VPS29-207ENST00000549970 ZC3H12CQ9C0D7 883 aaKnown RBP20.85■□□□□ 0.93
VPS29-207ENST00000549970 ZBTB12Q9Y330 459 aaPredicted RBP20.85■□□□□ 0.93
VPS29-207ENST00000549970 SPEF2Q9C093 1822 aa20.84■□□□□ 0.93
VPS29-207ENST00000549970 SHTN1A0MZ66 631 aa20.84■□□□□ 0.93
VPS29-207ENST00000549970 FMR1Q06787 632 aaKnown RBP eCLIP20.84■□□□□ 0.93
VPS29-207ENST00000549970 CNOT7Q9UIV1 285 aaKnown RBP20.84■□□□□ 0.93
VPS29-207ENST00000549970 F6X3S4 739 aa20.83■□□□□ 0.93
VPS29-207ENST00000549970 G3V3G9 751 aa20.83■□□□□ 0.93
VPS29-207ENST00000549970 HSPA1AP0DMV8 641 aaKnown RBP20.83■□□□□ 0.93
VPS29-207ENST00000549970 HSPA1BP0DMV9 641 aaKnown RBP20.83■□□□□ 0.93
VPS29-207ENST00000549970 DCAF8Q5TAQ9 597 aa20.83■□□□□ 0.93
VPS29-207ENST00000549970 MICALL2Q8IY33 904 aa20.83■□□□□ 0.93
VPS29-207ENST00000549970 LINS1Q8NG48 757 aa20.83■□□□□ 0.93
VPS29-207ENST00000549970 TRPM4Q8TD43 1214 aa20.83■□□□□ 0.93
VPS29-207ENST00000549970 KCNQ5Q9NR82 932 aa20.83■□□□□ 0.93
VPS29-207ENST00000549970 XDHP47989 1333 aa20.82■□□□□ 0.92
VPS29-207ENST00000549970 H7C1D1 291 aa20.82■□□□□ 0.92
VPS29-207ENST00000549970 TRAF5O00463 557 aa20.82■□□□□ 0.92
VPS29-207ENST00000549970 RTL9Q8NET4 1388 aa20.82■□□□□ 0.92
VPS29-207ENST00000549970 SCN9AQ15858 1988 aa20.81■□□□□ 0.92
VPS29-207ENST00000549970 HIRAP54198 1017 aaPredicted RBP20.81■□□□□ 0.92
VPS29-207ENST00000549970 CASP7P55210 303 aa20.81■□□□□ 0.92
VPS29-207ENST00000549970 IFFO2Q5TF58 517 aa20.81■□□□□ 0.92
VPS29-207ENST00000549970 PLA2G12BQ9BX93 195 aa20.81■□□□□ 0.92
VPS29-207ENST00000549970 ABT1Q9ULW3 272 aaKnown RBP20.81■□□□□ 0.92
VPS29-207ENST00000549970 ZNF521Q96K83 1311 aa20.8■□□□□ 0.92
VPS29-207ENST00000549970 ATP2B4P23634 1241 aa20.8■□□□□ 0.92
VPS29-207ENST00000549970 DPF2Q92785 391 aa20.8■□□□□ 0.92
VPS29-207ENST00000549970 BSDC1Q9NW68 430 aaPredicted RBP20.8■□□□□ 0.92
VPS29-207ENST00000549970 MINPP1Q9UNW1 487 aa20.8■□□□□ 0.92
VPS29-207ENST00000549970 IGHMBP2P38935 993 aaKnown RBP20.79■□□□□ 0.92
VPS29-207ENST00000549970 VEGFBP49765 207 aa20.79■□□□□ 0.92
VPS29-207ENST00000549970 FAM161AQ3B820 660 aa20.79■□□□□ 0.92
VPS29-207ENST00000549970 SAMD7Q7Z3H4 446 aa20.79■□□□□ 0.92
VPS29-207ENST00000549970 GLIS2Q9BZE0 524 aaPredicted RBP20.79■□□□□ 0.92
VPS29-207ENST00000549970 TRPM7Q96QT4 1865 aa20.79■□□□□ 0.92
VPS29-207ENST00000549970 RASSF10A6NK89 507 aa20.78■□□□□ 0.92
VPS29-207ENST00000549970 ITGA6P23229 1130 aa20.78■□□□□ 0.92
VPS29-207ENST00000549970 RPS12P25398 132 aaKnown RBP20.78■□□□□ 0.92
VPS29-207ENST00000549970 DEFB115Q30KQ5 88 aa20.78■□□□□ 0.92
VPS29-207ENST00000549970 BEND3Q5T5X7 828 aa20.78■□□□□ 0.92
VPS29-207ENST00000549970 WTIPA6NIX2 430 aaPredicted RBP20.77■□□□□ 0.92
VPS29-207ENST00000549970 TBC1D10BQ4KMP7 808 aaPredicted RBP20.77■□□□□ 0.92
VPS29-207ENST00000549970 ZC3H15Q8WU90 426 aaKnown RBP20.77■□□□□ 0.92
VPS29-207ENST00000549970 PGAP2Q9UHJ9 254 aa20.77■□□□□ 0.92
VPS29-207ENST00000549970 CSF1RP07333 972 aa20.76■□□□□ 0.91
VPS29-207ENST00000549970 VIL1P09327 827 aaKnown RBP20.76■□□□□ 0.91
VPS29-207ENST00000549970 RBM26Q5T8P6 1007 aaKnown RBP20.76■□□□□ 0.91
VPS29-207ENST00000549970 COL13A1Q5TAT6 717 aaPredicted RBP20.76■□□□□ 0.91
VPS29-207ENST00000549970 CST9Q5W186 159 aa20.76■□□□□ 0.91
VPS29-207ENST00000549970 EGFRP00533 1210 aa20.75■□□□□ 0.91
VPS29-207ENST00000549970 CCT4P50991 539 aaKnown RBP20.75■□□□□ 0.91
VPS29-207ENST00000549970 MPHOSPH8Q99549 860 aa20.75■□□□□ 0.91
VPS29-207ENST00000549970 MED23Q9ULK4 1368 aa20.74■□□□□ 0.91
VPS29-207ENST00000549970 CELF2O95319 508 aaKnown RBP20.74■□□□□ 0.91
VPS29-207ENST00000549970 SLC4A10Q6U841 1118 aa20.74■□□□□ 0.91
VPS29-207ENST00000549970 PAXIP1Q6ZW49 1069 aaPredicted RBP20.74■□□□□ 0.91
VPS29-207ENST00000549970 CDC37L1Q7L3B6 337 aa20.74■□□□□ 0.91
VPS29-207ENST00000549970 ZNF408Q9H9D4 720 aa20.74■□□□□ 0.91
VPS29-207ENST00000549970 CHMP3Q9Y3E7 222 aa20.74■□□□□ 0.91
VPS29-207ENST00000549970 ANKRD18BA2A2Z9 1011 aa20.73■□□□□ 0.91
VPS29-207ENST00000549970 RSBN1LQ6PCB5 846 aaPredicted RBP20.73■□□□□ 0.91
VPS29-207ENST00000549970 PODNQ7Z5L7 613 aa20.73■□□□□ 0.91
VPS29-207ENST00000549970 PSME4Q14997 1843 aa20.73■□□□□ 0.91
VPS29-207ENST00000549970 WDR33Q9C0J8 1336 aaKnown RBP20.73■□□□□ 0.91
VPS29-207ENST00000549970 E9PSI1 815 aa20.72■□□□□ 0.91
VPS29-207ENST00000549970 GRM8O00222 908 aa20.72■□□□□ 0.91
VPS29-207ENST00000549970 FOXO4P98177 505 aa20.72■□□□□ 0.91
VPS29-207ENST00000549970 KIF4BQ2VIQ3 1234 aa20.72■□□□□ 0.91
VPS29-207ENST00000549970 USP48Q86UV5 1035 aa20.72■□□□□ 0.91
VPS29-207ENST00000549970 TLL2Q9Y6L7 1015 aa20.72■□□□□ 0.91
VPS29-207ENST00000549970 USP17L3A6NCW0 530 aa20.71■□□□□ 0.91
VPS29-207ENST00000549970 USP17L4A6NCW7 530 aa20.71■□□□□ 0.91
VPS29-207ENST00000549970 GRM1Q13255 1194 aa20.71■□□□□ 0.91
VPS29-207ENST00000549970 IFIT5Q13325 482 aaKnown RBP20.71■□□□□ 0.91
VPS29-207ENST00000549970 USP17L1Q7RTZ2 530 aa20.71■□□□□ 0.91
VPS29-207ENST00000549970 AGBL3Q8NEM8 1001 aa20.71■□□□□ 0.91
VPS29-207ENST00000549970 ANKRD2Q9GZV1 360 aa20.71■□□□□ 0.91
VPS29-207ENST00000549970 C9orf78Q9NZ63 289 aaPredicted RBP20.71■□□□□ 0.91
VPS29-207ENST00000549970 LEMD3Q9Y2U8 911 aa20.71■□□□□ 0.91
VPS29-207ENST00000549970 POLR2AP24928 1970 aaKnown RBP20.7■□□□□ 0.9
VPS29-207ENST00000549970 CHRNDQ07001 517 aa20.7■□□□□ 0.9
VPS29-207ENST00000549970 EPHA10Q5JZY3 1008 aa20.7■□□□□ 0.9
VPS29-207ENST00000549970 CYP4F22Q6NT55 531 aa20.7■□□□□ 0.9
VPS29-207ENST00000549970 DLK2Q6UY11 383 aa20.7■□□□□ 0.9
VPS29-207ENST00000549970 FBXW7Q969H0 707 aa20.7■□□□□ 0.9
VPS29-207ENST00000549970 SRCIN1Q9C0H9 1055 aa20.7■□□□□ 0.9
VPS29-207ENST00000549970 ZNF804BA4D1E1 1349 aa20.7■□□□□ 0.9
VPS29-207ENST00000549970 FOXN1O15353 648 aa20.69■□□□□ 0.9
VPS29-207ENST00000549970 ALDH1L1O75891 902 aa20.69■□□□□ 0.9
VPS29-207ENST00000549970 KCNJ4P48050 445 aa20.69■□□□□ 0.9
VPS29-207ENST00000549970 LMBR1LQ6UX01 489 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 125.6 ms