RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 TOGARAM1Q9Y4F4 1720 aa9.46□□□□□ -0.89
CD44-228ENST00000528455 ZBTB7AO95365 584 aa9.46□□□□□ -0.9
CD44-228ENST00000528455 COPS2P61201 443 aa9.46□□□□□ -0.9
CD44-228ENST00000528455 PDGFDQ9GZP0 370 aaPredicted RBP9.46□□□□□ -0.9
CD44-228ENST00000528455 IPO8O15397 1037 aaKnown RBP9.45□□□□□ -0.9
CD44-228ENST00000528455 PTCD1O75127 700 aaKnown RBP9.45□□□□□ -0.9
CD44-228ENST00000528455 NR1I2O75469 434 aa9.45□□□□□ -0.9
CD44-228ENST00000528455 STARD3NLO95772 234 aa9.45□□□□□ -0.9
CD44-228ENST00000528455 KRT24Q2M2I5 525 aa9.45□□□□□ -0.9
CD44-228ENST00000528455 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.45□□□□□ -0.9
CD44-228ENST00000528455 SSH1Q8WYL5 1049 aa9.45□□□□□ -0.9
CD44-228ENST00000528455 ARHGAP45Q92619 1136 aa9.45□□□□□ -0.9
CD44-228ENST00000528455 MTFR1LQ9H019 292 aa9.45□□□□□ -0.9
CD44-228ENST00000528455 DBF4Q9UBU7 674 aaPredicted RBP9.45□□□□□ -0.9
CD44-228ENST00000528455 CCNL1Q9UK58 526 aaPredicted RBP9.45□□□□□ -0.9
CD44-228ENST00000528455 SUPT16HQ9Y5B9 1047 aaKnown RBP9.45□□□□□ -0.9
CD44-228ENST00000528455 USP16Q9Y5T5 823 aa9.45□□□□□ -0.9
CD44-228ENST00000528455 RNF123Q5XPI4 1314 aa9.45□□□□□ -0.9
CD44-228ENST00000528455 LILRB3O75022 631 aa9.44□□□□□ -0.9
CD44-228ENST00000528455 BCAR3O75815 825 aa9.44□□□□□ -0.9
CD44-228ENST00000528455 KCNQ4P56696 695 aa9.44□□□□□ -0.9
CD44-228ENST00000528455 QPCTQ16769 361 aa9.44□□□□□ -0.9
CD44-228ENST00000528455 ZNF827Q17R98 1081 aa9.44□□□□□ -0.9
CD44-228ENST00000528455 CSPP1Q1MSJ5 1256 aa9.44□□□□□ -0.9
CD44-228ENST00000528455 HDGFL1Q5TGJ6 251 aa9.44□□□□□ -0.9
CD44-228ENST00000528455 STK31Q9BXU1 1019 aa9.44□□□□□ -0.9
CD44-228ENST00000528455 TFCP2L1Q9NZI6 479 aa9.44□□□□□ -0.9
CD44-228ENST00000528455 CASZ1Q86V15 1759 aa9.44□□□□□ -0.9
CD44-228ENST00000528455 UBR2Q8IWV8 1755 aa9.44□□□□□ -0.9
CD44-228ENST00000528455 ERBB4Q15303 1308 aa9.43□□□□□ -0.9
CD44-228ENST00000528455 LOC102724428A0A0B4J2F2 783 aa9.43□□□□□ -0.9
CD44-228ENST00000528455 EIF2S2P20042 333 aaKnown RBP9.43□□□□□ -0.9
CD44-228ENST00000528455 SIK1P57059 783 aa9.43□□□□□ -0.9
CD44-228ENST00000528455 PRPF38BQ5VTL8 546 aaKnown RBP9.43□□□□□ -0.9
CD44-228ENST00000528455 BRICD5Q6PL45 260 aa9.43□□□□□ -0.9
CD44-228ENST00000528455 SLC16A10Q8TF71 515 aa9.43□□□□□ -0.9
CD44-228ENST00000528455 ZNF516Q92618 1163 aa9.43□□□□□ -0.9
CD44-228ENST00000528455 SYMPKQ92797 1274 aaKnown RBP9.43□□□□□ -0.9
CD44-228ENST00000528455 THAP11Q96EK4 314 aa9.43□□□□□ -0.9
CD44-228ENST00000528455 IL21Q9HBE4 155 aa9.43□□□□□ -0.9
CD44-228ENST00000528455 DDX21Q9NR30 783 aaKnown RBP eCLIP9.43□□□□□ -0.9
CD44-228ENST00000528455 HYPKQ9NX55 129 aa9.43□□□□□ -0.9
CD44-228ENST00000528455 LY75O60449 1722 aa9.42□□□□□ -0.9
CD44-228ENST00000528455 ZNF831Q5JPB2 1677 aa9.42□□□□□ -0.9
CD44-228ENST00000528455 PAPPAQ13219 1627 aa9.42□□□□□ -0.9
CD44-228ENST00000528455 ZPR1O75312 459 aa9.42□□□□□ -0.9
CD44-228ENST00000528455 CYP19A1P11511 503 aaPredicted RBP9.42□□□□□ -0.9
CD44-228ENST00000528455 PDE3AQ14432 1141 aa9.42□□□□□ -0.9
CD44-228ENST00000528455 Q3C1V9 767 aa9.42□□□□□ -0.9
CD44-228ENST00000528455 RC3H1Q5TC82 1133 aaKnown RBP9.42□□□□□ -0.9
CD44-228ENST00000528455 PPP2R2DQ66LE6 453 aa9.42□□□□□ -0.9
CD44-228ENST00000528455 RNF19BQ6ZMZ0 732 aa9.42□□□□□ -0.9
CD44-228ENST00000528455 SLC4A9Q96Q91 983 aa9.42□□□□□ -0.9
CD44-228ENST00000528455 SMC4Q9NTJ3 1288 aa9.42□□□□□ -0.9
CD44-228ENST00000528455 KCPQ6ZWJ8 1503 aa9.41□□□□□ -0.9
CD44-228ENST00000528455 PALLDQ8WX93 1383 aa9.41□□□□□ -0.9
CD44-228ENST00000528455 PRAMEF22A3QJZ6 481 aa9.41□□□□□ -0.9
CD44-228ENST00000528455 ZKSCAN2Q63HK3 967 aa9.41□□□□□ -0.9
CD44-228ENST00000528455 DNAJC10Q8IXB1 793 aa9.41□□□□□ -0.9
CD44-228ENST00000528455 ZBTB3Q9H5J0 574 aa9.41□□□□□ -0.9
CD44-228ENST00000528455 NOB1Q9ULX3 412 aaKnown RBP9.41□□□□□ -0.9
CD44-228ENST00000528455 PTPRCP08575 1304 aa9.4□□□□□ -0.9
CD44-228ENST00000528455 PNPLA7Q6ZV29 1317 aa9.4□□□□□ -0.9
CD44-228ENST00000528455 KIF16BQ96L93 1317 aa9.4□□□□□ -0.9
CD44-228ENST00000528455 C6orf229H3BNL8 230 aa9.4□□□□□ -0.9
CD44-228ENST00000528455 ITGBL1O95965 494 aaPredicted RBP9.4□□□□□ -0.9
CD44-228ENST00000528455 POLD1P28340 1107 aa9.4□□□□□ -0.9
CD44-228ENST00000528455 MTMR2Q13614 643 aa9.4□□□□□ -0.9
CD44-228ENST00000528455 RTL5Q5HYW3 569 aaPredicted RBP9.4□□□□□ -0.9
CD44-228ENST00000528455 FLAD1Q8NFF5 587 aa9.4□□□□□ -0.9
CD44-228ENST00000528455 ARXQ96QS3 562 aa9.4□□□□□ -0.9
CD44-228ENST00000528455 FMNL1O95466 1100 aaPredicted RBP9.39□□□□□ -0.91
CD44-228ENST00000528455 A1BGP04217 495 aa9.39□□□□□ -0.91
CD44-228ENST00000528455 IL6STP40189 918 aaPredicted RBP9.39□□□□□ -0.91
CD44-228ENST00000528455 RRP1P56182 461 aaKnown RBP9.39□□□□□ -0.91
CD44-228ENST00000528455 ATF7IPQ6VMQ6 1270 aa9.39□□□□□ -0.91
CD44-228ENST00000528455 LRP10Q7Z4F1 713 aa9.39□□□□□ -0.91
CD44-228ENST00000528455 FRAT1Q92837 279 aaPredicted RBP9.39□□□□□ -0.91
CD44-228ENST00000528455 API5Q9BZZ5 524 aaKnown RBP9.39□□□□□ -0.91
CD44-228ENST00000528455 FHDC1Q9C0D6 1143 aaPredicted RBP9.39□□□□□ -0.91
CD44-228ENST00000528455 CHPF2Q9P2E5 772 aa9.39□□□□□ -0.91
CD44-228ENST00000528455 QSER1Q2KHR3 1735 aa9.39□□□□□ -0.91
CD44-228ENST00000528455 SPDYE5A6NIY4 337 aa9.38□□□□□ -0.91
CD44-228ENST00000528455 TCERG1O14776 1098 aaKnown RBP9.38□□□□□ -0.91
CD44-228ENST00000528455 TLL1O43897 1013 aa9.38□□□□□ -0.91
CD44-228ENST00000528455 FLIIQ13045 1269 aa9.38□□□□□ -0.91
CD44-228ENST00000528455 ITPK1Q13572 414 aa9.38□□□□□ -0.91
CD44-228ENST00000528455 NBPF10Q6P3W6 841 aaKnown RBP9.38□□□□□ -0.91
CD44-228ENST00000528455 INTS5Q6P9B9 1019 aaKnown RBP9.38□□□□□ -0.91
CD44-228ENST00000528455 COPS6Q7L5N1 327 aa9.38□□□□□ -0.91
CD44-228ENST00000528455 G2E3Q7L622 706 aa9.38□□□□□ -0.91
CD44-228ENST00000528455 COL23A1Q86Y22 540 aaPredicted RBP9.38□□□□□ -0.91
CD44-228ENST00000528455 NBPF15Q8N660 670 aa9.38□□□□□ -0.91
CD44-228ENST00000528455 SYT17Q9BSW7 474 aa9.38□□□□□ -0.91
CD44-228ENST00000528455 BCL2L13Q9BXK5 485 aa9.38□□□□□ -0.91
CD44-228ENST00000528455 PHAXQ9H814 394 aaKnown RBP9.38□□□□□ -0.91
CD44-228ENST00000528455 CCDC87Q9NVE4 849 aa9.38□□□□□ -0.91
CD44-228ENST00000528455 PLIN1O60240 522 aa9.37□□□□□ -0.91
CD44-228ENST00000528455 RPS6KA4O75676 772 aa9.37□□□□□ -0.91
CD44-228ENST00000528455 DDX58O95786 925 aaKnown RBP9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms