RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 CDC5LQ99459 802 aaKnown RBP22.92■■□□□ 1.26
SQSTM1-209ENST00000504627 PODXL2Q9NZ53 605 aa22.92■■□□□ 1.26
SQSTM1-209ENST00000504627 COL4A1P02462 1669 aa22.92■■□□□ 1.26
SQSTM1-209ENST00000504627 PCNTO95613 3336 aa22.91■■□□□ 1.26
SQSTM1-209ENST00000504627 UFL1O94874 794 aa22.91■■□□□ 1.26
SQSTM1-209ENST00000504627 DOK7Q18PE1 504 aa22.91■■□□□ 1.26
SQSTM1-209ENST00000504627 UBE3BQ7Z3V4 1068 aa22.91■■□□□ 1.26
SQSTM1-209ENST00000504627 GPR101Q96P66 508 aaPredicted RBP22.91■■□□□ 1.26
SQSTM1-209ENST00000504627 SPINK5Q9NQ38 1064 aaPredicted RBP22.91■■□□□ 1.26
SQSTM1-209ENST00000504627 GGA1Q9UJY5 639 aa22.91■■□□□ 1.26
SQSTM1-209ENST00000504627 ECE2O60344 883 aa22.9■■□□□ 1.26
SQSTM1-209ENST00000504627 TTLL11Q8NHH1 800 aa22.9■■□□□ 1.26
SQSTM1-209ENST00000504627 H7C1D1 291 aa22.89■■□□□ 1.25
SQSTM1-209ENST00000504627 H7C1W4 665 aa22.89■■□□□ 1.25
SQSTM1-209ENST00000504627 PSMD14O00487 310 aa22.89■■□□□ 1.25
SQSTM1-209ENST00000504627 GCKRQ14397 625 aa22.89■■□□□ 1.25
SQSTM1-209ENST00000504627 CNOT7Q9UIV1 285 aaKnown RBP22.89■■□□□ 1.25
SQSTM1-209ENST00000504627 ZBTB12Q9Y330 459 aaPredicted RBP22.89■■□□□ 1.25
SQSTM1-209ENST00000504627 CNTNAP1P78357 1384 aa22.89■■□□□ 1.25
SQSTM1-209ENST00000504627 HSPA1AP0DMV8 641 aaKnown RBP22.88■■□□□ 1.25
SQSTM1-209ENST00000504627 HSPA1BP0DMV9 641 aaKnown RBP22.88■■□□□ 1.25
SQSTM1-209ENST00000504627 IFFO2Q5TF58 517 aa22.88■■□□□ 1.25
SQSTM1-209ENST00000504627 LINS1Q8NG48 757 aa22.88■■□□□ 1.25
SQSTM1-209ENST00000504627 GREM2Q9H772 168 aa22.88■■□□□ 1.25
SQSTM1-209ENST00000504627 ABT1Q9ULW3 272 aaKnown RBP22.88■■□□□ 1.25
SQSTM1-209ENST00000504627 XDHP47989 1333 aa22.87■■□□□ 1.25
SQSTM1-209ENST00000504627 MICALL2Q8IY33 904 aa22.87■■□□□ 1.25
SQSTM1-209ENST00000504627 E9PSI1 815 aa22.86■■□□□ 1.25
SQSTM1-209ENST00000504627 DPF2Q92785 391 aa22.86■■□□□ 1.25
SQSTM1-209ENST00000504627 ATP2B4P23634 1241 aa22.85■■□□□ 1.25
SQSTM1-209ENST00000504627 DEFB115Q30KQ5 88 aa22.85■■□□□ 1.25
SQSTM1-209ENST00000504627 KCNQ5Q9NR82 932 aa22.85■■□□□ 1.25
SQSTM1-209ENST00000504627 BSDC1Q9NW68 430 aaPredicted RBP22.85■■□□□ 1.25
SQSTM1-209ENST00000504627 CACNA1FO60840 1977 aa22.84■■□□□ 1.25
SQSTM1-209ENST00000504627 TRAF5O00463 557 aa22.84■■□□□ 1.25
SQSTM1-209ENST00000504627 RPS12P25398 132 aaKnown RBP22.84■■□□□ 1.25
SQSTM1-209ENST00000504627 IGHMBP2P38935 993 aaKnown RBP22.84■■□□□ 1.25
SQSTM1-209ENST00000504627 VEGFBP49765 207 aa22.84■■□□□ 1.25
SQSTM1-209ENST00000504627 FMR1Q06787 632 aaKnown RBP eCLIP22.84■■□□□ 1.252e-7■□□□□ 9.8
SQSTM1-209ENST00000504627 TRPM4Q8TD43 1214 aa22.84■■□□□ 1.25
SQSTM1-209ENST00000504627 ZC3H15Q8WU90 426 aaKnown RBP22.84■■□□□ 1.25
SQSTM1-209ENST00000504627 SHTN1A0MZ66 631 aa22.83■■□□□ 1.25
SQSTM1-209ENST00000504627 F6X3S4 739 aa22.83■■□□□ 1.25
SQSTM1-209ENST00000504627 HIRAP54198 1017 aaPredicted RBP22.83■■□□□ 1.25
SQSTM1-209ENST00000504627 SLFN5Q08AF3 891 aa22.83■■□□□ 1.25
SQSTM1-209ENST00000504627 PLA2G12BQ9BX93 195 aa22.83■■□□□ 1.25
SQSTM1-209ENST00000504627 MINPP1Q9UNW1 487 aa22.83■■□□□ 1.25
SQSTM1-209ENST00000504627 RTL9Q8NET4 1388 aa22.83■■□□□ 1.25
SQSTM1-209ENST00000504627 ITGA6P23229 1130 aa22.82■■□□□ 1.24
SQSTM1-209ENST00000504627 CDCA7LQ96GN5 454 aa22.82■■□□□ 1.24
SQSTM1-209ENST00000504627 MYH3P11055 1940 aa22.81■■□□□ 1.24
SQSTM1-209ENST00000504627 RASSF10A6NK89 507 aa22.81■■□□□ 1.24
SQSTM1-209ENST00000504627 PAXIP1Q6ZW49 1069 aaPredicted RBP22.81■■□□□ 1.24
SQSTM1-209ENST00000504627 SAMD7Q7Z3H4 446 aa22.81■■□□□ 1.24
SQSTM1-209ENST00000504627 MPHOSPH8Q99549 860 aa22.81■■□□□ 1.24
SQSTM1-209ENST00000504627 GLIS2Q9BZE0 524 aaPredicted RBP22.81■■□□□ 1.24
SQSTM1-209ENST00000504627 PGAP2Q9UHJ9 254 aa22.81■■□□□ 1.24
SQSTM1-209ENST00000504627 VIL1P09327 827 aaKnown RBP22.8■■□□□ 1.24
SQSTM1-209ENST00000504627 CASP7P55210 303 aa22.8■■□□□ 1.24
SQSTM1-209ENST00000504627 FAM161AQ3B820 660 aa22.8■■□□□ 1.24
SQSTM1-209ENST00000504627 TBC1D10BQ4KMP7 808 aaPredicted RBP22.8■■□□□ 1.24
SQSTM1-209ENST00000504627 BEND3Q5T5X7 828 aa22.8■■□□□ 1.24
SQSTM1-209ENST00000504627 RBM26Q5T8P6 1007 aaKnown RBP22.8■■□□□ 1.24
SQSTM1-209ENST00000504627 COL13A1Q5TAT6 717 aaPredicted RBP22.8■■□□□ 1.24
SQSTM1-209ENST00000504627 CDC37L1Q7L3B6 337 aa22.8■■□□□ 1.24
SQSTM1-209ENST00000504627 TRMT2AQ8IZ69 625 aaKnown RBP22.8■■□□□ 1.24
SQSTM1-209ENST00000504627 CSF1RP07333 972 aa22.79■■□□□ 1.24
SQSTM1-209ENST00000504627 CCT4P50991 539 aaKnown RBP22.79■■□□□ 1.24
SQSTM1-209ENST00000504627 CST9Q5W186 159 aa22.79■■□□□ 1.24
SQSTM1-209ENST00000504627 CELF2O95319 508 aaKnown RBP22.78■■□□□ 1.24
SQSTM1-209ENST00000504627 SLC4A10Q6U841 1118 aa22.78■■□□□ 1.24
SQSTM1-209ENST00000504627 PODNQ7Z5L7 613 aa22.78■■□□□ 1.24
SQSTM1-209ENST00000504627 ZNF408Q9H9D4 720 aa22.78■■□□□ 1.24
SQSTM1-209ENST00000504627 CHMP3Q9Y3E7 222 aa22.78■■□□□ 1.24
SQSTM1-209ENST00000504627 WDR33Q9C0J8 1336 aaKnown RBP22.78■■□□□ 1.24
SQSTM1-209ENST00000504627 ANKRD18BA2A2Z9 1011 aa22.77■■□□□ 1.24
SQSTM1-209ENST00000504627 GRM1Q13255 1194 aa22.77■■□□□ 1.24
SQSTM1-209ENST00000504627 AIDAQ96BJ3 306 aa22.77■■□□□ 1.24
SQSTM1-209ENST00000504627 ANKRD2Q9GZV1 360 aa22.77■■□□□ 1.24
SQSTM1-209ENST00000504627 WTIPA6NIX2 430 aaPredicted RBP22.76■■□□□ 1.23
SQSTM1-209ENST00000504627 RSBN1LQ6PCB5 846 aaPredicted RBP22.76■■□□□ 1.23
SQSTM1-209ENST00000504627 USP48Q86UV5 1035 aa22.76■■□□□ 1.23
SQSTM1-209ENST00000504627 AGBL3Q8NEM8 1001 aa22.76■■□□□ 1.23
SQSTM1-209ENST00000504627 C9orf78Q9NZ63 289 aaPredicted RBP22.76■■□□□ 1.23
SQSTM1-209ENST00000504627 LEMD3Q9Y2U8 911 aa22.76■■□□□ 1.23
SQSTM1-209ENST00000504627 MED23Q9ULK4 1368 aa22.76■■□□□ 1.23
SQSTM1-209ENST00000504627 USP17L3A6NCW0 530 aa22.75■■□□□ 1.23
SQSTM1-209ENST00000504627 USP17L4A6NCW7 530 aa22.75■■□□□ 1.23
SQSTM1-209ENST00000504627 EGFRP00533 1210 aa22.75■■□□□ 1.23
SQSTM1-209ENST00000504627 ECE1P42892 770 aa22.75■■□□□ 1.23
SQSTM1-209ENST00000504627 KCNJ4P48050 445 aa22.75■■□□□ 1.23
SQSTM1-209ENST00000504627 IFIT5Q13325 482 aaKnown RBP22.75■■□□□ 1.23
SQSTM1-209ENST00000504627 KIF4BQ2VIQ3 1234 aa22.75■■□□□ 1.23
SQSTM1-209ENST00000504627 USP17L1Q7RTZ2 530 aa22.75■■□□□ 1.23
SQSTM1-209ENST00000504627 DCPSQ96C86 337 aaKnown RBP22.75■■□□□ 1.23
SQSTM1-209ENST00000504627 SRCIN1Q9C0H9 1055 aa22.75■■□□□ 1.23
SQSTM1-209ENST00000504627 TLL2Q9Y6L7 1015 aa22.75■■□□□ 1.23
SQSTM1-209ENST00000504627 SPEF2Q9C093 1822 aa22.74■■□□□ 1.23
SQSTM1-209ENST00000504627 GRM8O00222 908 aa22.74■■□□□ 1.23
SQSTM1-209ENST00000504627 FBXW7Q969H0 707 aa22.74■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms