RNA–Protein interactions for RNA: ENST00000504181.1

LSM6-204, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM6, Length 549 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-204ENST00000504181 GRAPQ13588 217 aa16.79■□□□□ 0.28
LSM6-204ENST00000504181 PRAMEF18Q5VWM3 479 aa16.79■□□□□ 0.28
LSM6-204ENST00000504181 DDX46Q7L014 1031 aaKnown RBP16.79■□□□□ 0.28
LSM6-204ENST00000504181 GRAPLQ8TC17 118 aaPredicted RBP16.79■□□□□ 0.28
LSM6-204ENST00000504181 ARMC5Q96C12 935 aa16.79■□□□□ 0.28
LSM6-204ENST00000504181 PHACTR3Q96KR7 559 aa16.79■□□□□ 0.28
LSM6-204ENST00000504181 TMEM106CQ9BVX2 250 aa16.79■□□□□ 0.28
LSM6-204ENST00000504181 RBM27Q9P2N5 1060 aaKnown RBP16.79■□□□□ 0.28
LSM6-204ENST00000504181 ZNF609O15014 1411 aa16.79■□□□□ 0.28
LSM6-204ENST00000504181 COL4A1P02462 1669 aa16.78■□□□□ 0.28
LSM6-204ENST00000504181 PARP10Q53GL7 1025 aa16.78■□□□□ 0.28
LSM6-204ENST00000504181 SLC10A5Q5PT55 438 aa16.78■□□□□ 0.28
LSM6-204ENST00000504181 GIGYF2Q6Y7W6 1299 aaKnown RBP16.78■□□□□ 0.28
LSM6-204ENST00000504181 ZNF646O15015 1829 aaPredicted RBP16.77■□□□□ 0.28
LSM6-204ENST00000504181 UNC80Q8N2C7 3258 aa16.77■□□□□ 0.28
LSM6-204ENST00000504181 C6orf229H3BNL8 230 aa16.77■□□□□ 0.28
LSM6-204ENST00000504181 HCLS1P14317 486 aaPredicted RBP16.77■□□□□ 0.28
LSM6-204ENST00000504181 MNX1P50219 401 aaPredicted RBP16.77■□□□□ 0.28
LSM6-204ENST00000504181 CD99L2Q8TCZ2 262 aa16.77■□□□□ 0.28
LSM6-204ENST00000504181 UTP14AQ9BVJ6 771 aaKnown RBP16.77■□□□□ 0.28
LSM6-204ENST00000504181 ZSWIM8A7E2V4 1837 aa16.76■□□□□ 0.27
LSM6-204ENST00000504181 DCTN1Q14203 1278 aa16.76■□□□□ 0.27
LSM6-204ENST00000504181 AMER1Q5JTC6 1135 aaPredicted RBP16.76■□□□□ 0.27
LSM6-204ENST00000504181 NSFL1CQ9UNZ2 370 aaKnown RBP16.76■□□□□ 0.27
LSM6-204ENST00000504181 PITPNM2Q9BZ72 1349 aa16.75■□□□□ 0.27
LSM6-204ENST00000504181 ALDH1A1P00352 501 aa16.75■□□□□ 0.27
LSM6-204ENST00000504181 VIL1P09327 827 aaKnown RBP16.75■□□□□ 0.27
LSM6-204ENST00000504181 RTF1Q92541 710 aaKnown RBP16.75■□□□□ 0.27
LSM6-204ENST00000504181 ERO1AQ96HE7 468 aa16.75■□□□□ 0.27
LSM6-204ENST00000504181 MIS18AQ9NYP9 233 aa16.75■□□□□ 0.27
LSM6-204ENST00000504181 PRKAR2BP31323 418 aa16.74■□□□□ 0.27
LSM6-204ENST00000504181 ZNF280AP59817 542 aaPredicted RBP16.74■□□□□ 0.27
LSM6-204ENST00000504181 TCIRG1Q13488 830 aa16.74■□□□□ 0.27
LSM6-204ENST00000504181 POLLQ9UGP5 575 aa16.74■□□□□ 0.27
LSM6-204ENST00000504181 ECM29Q5VYK3 1845 aa16.73■□□□□ 0.27
LSM6-204ENST00000504181 PTPN12Q05209 780 aaKnown RBP16.73■□□□□ 0.27
LSM6-204ENST00000504181 PRKG1Q13976 671 aa16.73■□□□□ 0.27
LSM6-204ENST00000504181 TMC4Q7Z404 712 aa16.73■□□□□ 0.27
LSM6-204ENST00000504181 ZNF333Q96JL9 665 aa16.73■□□□□ 0.27
LSM6-204ENST00000504181 EFCC1Q9HA90 598 aa16.73■□□□□ 0.27
LSM6-204ENST00000504181 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.73■□□□□ 0.27
LSM6-204ENST00000504181 GPSM2P81274 684 aa16.72■□□□□ 0.27
LSM6-204ENST00000504181 SLC4A8Q2Y0W8 1093 aa16.72■□□□□ 0.27
LSM6-204ENST00000504181 SPRYD7Q5W111 196 aa16.72■□□□□ 0.27
LSM6-204ENST00000504181 IFNL1Q8IU54 200 aa16.72■□□□□ 0.27
LSM6-204ENST00000504181 EYA3Q99504 573 aa16.72■□□□□ 0.27
LSM6-204ENST00000504181 MYOZ2Q9NPC6 264 aa16.72■□□□□ 0.27
LSM6-204ENST00000504181 MYCP01106 439 aaPredicted RBP16.71■□□□□ 0.27
LSM6-204ENST00000504181 KCNA4P22459 653 aa16.71■□□□□ 0.27
LSM6-204ENST00000504181 NF2P35240 595 aa16.71■□□□□ 0.27
LSM6-204ENST00000504181 OTOFQ9HC10 1997 aa16.7■□□□□ 0.26
LSM6-204ENST00000504181 G3V3G9 751 aa16.7■□□□□ 0.26
LSM6-204ENST00000504181 CAP1Q01518 475 aa16.7■□□□□ 0.26
LSM6-204ENST00000504181 TAF7Q15545 349 aaPredicted RBP16.7■□□□□ 0.26
LSM6-204ENST00000504181 DCAF8Q5TAQ9 597 aa16.7■□□□□ 0.26
LSM6-204ENST00000504181 RSBN1LQ6PCB5 846 aaPredicted RBP16.7■□□□□ 0.26
LSM6-204ENST00000504181 RSPH6AQ9H0K4 717 aa16.7■□□□□ 0.26
LSM6-204ENST00000504181 SPEF2Q9C093 1822 aa16.7■□□□□ 0.26
LSM6-204ENST00000504181 LAMA3Q16787 3333 aa16.69■□□□□ 0.26
LSM6-204ENST00000504181 IGF2BP3O00425 579 aaKnown RBP eCLIP16.69■□□□□ 0.26
LSM6-204ENST00000504181 SLC9C1Q4G0N8 1177 aa16.69■□□□□ 0.26
LSM6-204ENST00000504181 ARMC9Q7Z3E5 817 aa16.69■□□□□ 0.26
LSM6-204ENST00000504181 AGBL3Q8NEM8 1001 aa16.69■□□□□ 0.26
LSM6-204ENST00000504181 DPF3Q92784 378 aa16.69■□□□□ 0.26
LSM6-204ENST00000504181 CELF1Q92879 486 aaKnown RBP16.69■□□□□ 0.26
LSM6-204ENST00000504181 MANSC4A6NHS7 340 aaPredicted RBP16.68■□□□□ 0.26
LSM6-204ENST00000504181 NBPF9Q3BBW0 867 aa16.68■□□□□ 0.26
LSM6-204ENST00000504181 CC2D1BQ5T0F9 858 aaKnown RBP16.68■□□□□ 0.26
LSM6-204ENST00000504181 TBC1D16Q8TBP0 767 aa16.68■□□□□ 0.26
LSM6-204ENST00000504181 ZNF428Q96B54 188 aa16.68■□□□□ 0.26
LSM6-204ENST00000504181 THUMPD2Q9BTF0 503 aaKnown RBP16.68■□□□□ 0.26
LSM6-204ENST00000504181 ZC3H12CQ9C0D7 883 aaKnown RBP16.68■□□□□ 0.26
LSM6-204ENST00000504181 SOX1O00570 391 aaPredicted RBP16.67■□□□□ 0.26
LSM6-204ENST00000504181 USP17L8P0C7I0 530 aa16.67■□□□□ 0.26
LSM6-204ENST00000504181 INHBEP58166 350 aa16.67■□□□□ 0.26
LSM6-204ENST00000504181 CRHR2Q13324 411 aa16.67■□□□□ 0.26
LSM6-204ENST00000504181 NBPF11Q86T75 865 aa16.67■□□□□ 0.26
LSM6-204ENST00000504181 TRMT112Q9UI30 125 aaKnown RBP16.67■□□□□ 0.26
LSM6-204ENST00000504181 FZD1Q9UP38 647 aa16.67■□□□□ 0.26
LSM6-204ENST00000504181 PTCH2Q9Y6C5 1203 aa16.67■□□□□ 0.26
LSM6-204ENST00000504181 WTIPA6NIX2 430 aaPredicted RBP16.66■□□□□ 0.26
LSM6-204ENST00000504181 HSPA5P11021 654 aaKnown RBP16.66■□□□□ 0.26
LSM6-204ENST00000504181 SP3Q02447 781 aa16.66■□□□□ 0.26
LSM6-204ENST00000504181 NLRP10Q86W26 655 aa16.66■□□□□ 0.26
LSM6-204ENST00000504181 LRCH3Q96II8 777 aa16.66■□□□□ 0.26
LSM6-204ENST00000504181 PRO3102Q9H379 93 aa16.66■□□□□ 0.26
LSM6-204ENST00000504181 ANGEL1Q9UNK9 670 aaKnown RBP16.66■□□□□ 0.26
LSM6-204ENST00000504181 SH3TC1Q8TE82 1336 aa16.66■□□□□ 0.26
LSM6-204ENST00000504181 ALPK3Q96L96 1907 aa16.65■□□□□ 0.26
LSM6-204ENST00000504181 GMLQ99445 158 aa16.65■□□□□ 0.26
LSM6-204ENST00000504181 EIF4A1P60842 406 aaKnown RBP16.64■□□□□ 0.25
LSM6-204ENST00000504181 CNGB1Q14028 1251 aaPredicted RBP16.64■□□□□ 0.25
LSM6-204ENST00000504181 LDLRAD1Q5T700 205 aa16.64■□□□□ 0.25
LSM6-204ENST00000504181 COL25A1Q9BXS0 654 aaPredicted RBP16.64■□□□□ 0.25
LSM6-204ENST00000504181 UFL1O94874 794 aa16.63■□□□□ 0.25
LSM6-204ENST00000504181 NECTIN2Q92692 538 aa16.63■□□□□ 0.25
LSM6-204ENST00000504181 SLC10A4Q96EP9 437 aa16.63■□□□□ 0.25
LSM6-204ENST00000504181 WNK4Q96J92 1243 aa16.63■□□□□ 0.25
LSM6-204ENST00000504181 ANXA1P04083 346 aa16.62■□□□□ 0.25
LSM6-204ENST00000504181 ZBTB48P10074 688 aaPredicted RBP16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms