RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 XAGE3Q8WTP9 111 aa21.71■■□□□ 1.07
VIM-208ENST00000497849 TSPYL4Q9UJ04 414 aa21.71■■□□□ 1.07
VIM-208ENST00000497849 PAPPA2Q9BXP8 1791 aa21.7■■□□□ 1.06
VIM-208ENST00000497849 VIL1P09327 827 aaKnown RBP21.7■■□□□ 1.06
VIM-208ENST00000497849 ZNF296Q8WUU4 475 aaPredicted RBP21.7■■□□□ 1.06
VIM-208ENST00000497849 TBC1D8O95759 1140 aa21.68■■□□□ 1.06
VIM-208ENST00000497849 SF3B3Q15393 1217 aaKnown RBP21.68■■□□□ 1.06
VIM-208ENST00000497849 ANGEL2Q5VTE6 544 aaKnown RBP21.68■■□□□ 1.06
VIM-208ENST00000497849 TBC1D16Q8TBP0 767 aa21.68■■□□□ 1.06
VIM-208ENST00000497849 NECTIN2Q92692 538 aa21.68■■□□□ 1.06
VIM-208ENST00000497849 EYA3Q99504 573 aa21.68■■□□□ 1.06
VIM-208ENST00000497849 HDAC9Q9UKV0 1011 aa21.68■■□□□ 1.06
VIM-208ENST00000497849 FKBP1BP68106 108 aa21.67■■□□□ 1.06
VIM-208ENST00000497849 SCARF1Q14162 830 aa21.67■■□□□ 1.06
VIM-208ENST00000497849 MOB2Q70IA6 237 aa21.67■■□□□ 1.06
VIM-208ENST00000497849 ZNF280AP59817 542 aaPredicted RBP21.66■■□□□ 1.06
VIM-208ENST00000497849 PSME4Q14997 1843 aa21.66■■□□□ 1.06
VIM-208ENST00000497849 MKI67P46013 3256 aaKnown RBP21.66■■□□□ 1.06
VIM-208ENST00000497849 ZNF609O15014 1411 aa21.65■■□□□ 1.06
VIM-208ENST00000497849 FAM89AQ96GI7 184 aa21.65■■□□□ 1.06
VIM-208ENST00000497849 GPR25O00155 361 aa21.63■■□□□ 1.05
VIM-208ENST00000497849 FBXO46Q6PJ61 603 aaPredicted RBP21.63■■□□□ 1.05
VIM-208ENST00000497849 GCC1Q96CN9 775 aa21.63■■□□□ 1.05
VIM-208ENST00000497849 ISCA1Q9BUE6 129 aa21.63■■□□□ 1.05
VIM-208ENST00000497849 ZC3H12CQ9C0D7 883 aaKnown RBP21.63■■□□□ 1.05
VIM-208ENST00000497849 SCAF8Q9UPN6 1271 aaKnown RBP21.63■■□□□ 1.05
VIM-208ENST00000497849 UBE2Q2LH0YL09 131 aa21.62■■□□□ 1.05
VIM-208ENST00000497849 TM4SF4P48230 202 aa21.62■■□□□ 1.05
VIM-208ENST00000497849 NOM1Q5C9Z4 860 aaKnown RBP21.62■■□□□ 1.05
VIM-208ENST00000497849 RSBN1LQ6PCB5 846 aaPredicted RBP21.62■■□□□ 1.05
VIM-208ENST00000497849 AGBL3Q8NEM8 1001 aa21.62■■□□□ 1.05
VIM-208ENST00000497849 PODXL2Q9NZ53 605 aa21.62■■□□□ 1.05
VIM-208ENST00000497849 PITPNM2Q9BZ72 1349 aa21.61■■□□□ 1.05
VIM-208ENST00000497849 HTTP42858 3142 aa21.61■■□□□ 1.05
VIM-208ENST00000497849 RPS8P62241 208 aaKnown RBP21.61■■□□□ 1.05
VIM-208ENST00000497849 GMLQ99445 158 aa21.61■■□□□ 1.05
VIM-208ENST00000497849 BABAM1Q9NWV8 329 aa21.61■■□□□ 1.05
VIM-208ENST00000497849 MAPK8IP3Q9UPT6 1336 aa21.6■■□□□ 1.05
VIM-208ENST00000497849 ATP5J2-PTCD1G3V325 749 aa21.6■■□□□ 1.05
VIM-208ENST00000497849 HABP4Q5JVS0 413 aaKnown RBP21.6■■□□□ 1.05
VIM-208ENST00000497849 MYOZ2Q9NPC6 264 aa21.6■■□□□ 1.05
VIM-208ENST00000497849 KRT24Q2M2I5 525 aa21.59■■□□□ 1.05
VIM-208ENST00000497849 RTL5Q5HYW3 569 aaPredicted RBP21.59■■□□□ 1.05
VIM-208ENST00000497849 PRAMEF18Q5VWM3 479 aa21.59■■□□□ 1.05
VIM-208ENST00000497849 PLBD2Q8NHP8 589 aa21.59■■□□□ 1.05
VIM-208ENST00000497849 R3HDMLQ9H3Y0 253 aa21.59■■□□□ 1.05
VIM-208ENST00000497849 UFL1O94874 794 aa21.58■■□□□ 1.05
VIM-208ENST00000497849 USP17L8P0C7I0 530 aa21.58■■□□□ 1.05
VIM-208ENST00000497849 CHPF2Q9P2E5 772 aa21.58■■□□□ 1.05
VIM-208ENST00000497849 G3V3G9 751 aa21.57■■□□□ 1.04
VIM-208ENST00000497849 IRS4O14654 1257 aaPredicted RBP21.57■■□□□ 1.04
VIM-208ENST00000497849 RIPK4P57078 832 aa21.57■■□□□ 1.04
VIM-208ENST00000497849 DCAF8Q5TAQ9 597 aa21.57■■□□□ 1.04
VIM-208ENST00000497849 ANKRD13DQ6ZTN6 518 aa21.57■■□□□ 1.04
VIM-208ENST00000497849 CFHR5Q9BXR6 569 aa21.57■■□□□ 1.04
VIM-208ENST00000497849 SEC31BQ9NQW1 1179 aa21.57■■□□□ 1.04
VIM-208ENST00000497849 CENPFP49454 3210 aa21.57■■□□□ 1.04
VIM-208ENST00000497849 MKRN3Q13064 507 aaKnown RBP21.56■■□□□ 1.04
VIM-208ENST00000497849 PNNQ9H307 717 aaKnown RBP21.56■■□□□ 1.04
VIM-208ENST00000497849 ANKIB1Q9P2G1 1089 aa21.56■■□□□ 1.04
VIM-208ENST00000497849 GGA1Q9UJY5 639 aa21.56■■□□□ 1.04
VIM-208ENST00000497849 FKTNO75072 461 aa21.55■■□□□ 1.04
VIM-208ENST00000497849 NBPF9Q3BBW0 867 aa21.55■■□□□ 1.04
VIM-208ENST00000497849 ZNF646O15015 1829 aaPredicted RBP21.54■■□□□ 1.04
VIM-208ENST00000497849 BRCA2P51587 3418 aa21.54■■□□□ 1.04
VIM-208ENST00000497849 TRIM28Q13263 835 aaKnown RBP21.53■■□□□ 1.04
VIM-208ENST00000497849 TTLL12Q14166 644 aaPredicted RBP21.53■■□□□ 1.04
VIM-208ENST00000497849 POTEFA5A3E0 1075 aa21.52■■□□□ 1.04
VIM-208ENST00000497849 USP17L3A6NCW0 530 aa21.52■■□□□ 1.04
VIM-208ENST00000497849 USP17L4A6NCW7 530 aa21.52■■□□□ 1.04
VIM-208ENST00000497849 SREBF2Q12772 1141 aa21.52■■□□□ 1.04
VIM-208ENST00000497849 USP17L1Q7RTZ2 530 aa21.52■■□□□ 1.04
VIM-208ENST00000497849 KIAA0100Q14667 2235 aaKnown RBP21.52■■□□□ 1.04
VIM-208ENST00000497849 RBBP6Q7Z6E9 1792 aaKnown RBP21.51■■□□□ 1.03
VIM-208ENST00000497849 CHL1O00533 1208 aa21.51■■□□□ 1.03
VIM-208ENST00000497849 PTPN12Q05209 780 aaKnown RBP21.51■■□□□ 1.03
VIM-208ENST00000497849 PODNQ7Z5L7 613 aa21.51■■□□□ 1.03
VIM-208ENST00000497849 TMPOP42166 694 aaKnown RBP21.5■■□□□ 1.03
VIM-208ENST00000497849 HDGFL1Q5TGJ6 251 aa21.5■■□□□ 1.03
VIM-208ENST00000497849 WTIPA6NIX2 430 aaPredicted RBP21.49■■□□□ 1.03
VIM-208ENST00000497849 WNT10BO00744 389 aa21.49■■□□□ 1.03
VIM-208ENST00000497849 ZBTB38Q8NAP3 1195 aaPredicted RBP21.49■■□□□ 1.03
VIM-208ENST00000497849 MXD3Q9BW11 206 aa21.49■■□□□ 1.03
VIM-208ENST00000497849 DBF4Q9UBU7 674 aaPredicted RBP21.49■■□□□ 1.03
VIM-208ENST00000497849 XDHP47989 1333 aa21.49■■□□□ 1.03
VIM-208ENST00000497849 FXR1P51114 621 aaKnown RBP eCLIP21.48■■□□□ 1.03
VIM-208ENST00000497849 TRIM17Q9Y577 477 aa21.48■■□□□ 1.03
VIM-208ENST00000497849 NF2P35240 595 aa21.47■■□□□ 1.03
VIM-208ENST00000497849 LMOD3Q0VAK6 560 aa21.47■■□□□ 1.03
VIM-208ENST00000497849 DACT2Q5SW24 774 aa21.47■■□□□ 1.03
VIM-208ENST00000497849 LDLRAD1Q5T700 205 aa21.47■■□□□ 1.03
VIM-208ENST00000497849 SPRYD7Q5W111 196 aa21.47■■□□□ 1.03
VIM-208ENST00000497849 INTS3Q68E01 1043 aaKnown RBP21.47■■□□□ 1.03
VIM-208ENST00000497849 OTOP1Q7RTM1 612 aa21.47■■□□□ 1.03
VIM-208ENST00000497849 ATP2B4P23634 1241 aa21.46■■□□□ 1.03
VIM-208ENST00000497849 PRKG1Q13976 671 aa21.46■■□□□ 1.03
VIM-208ENST00000497849 CCDC85AQ96PX6 553 aaPredicted RBP21.46■■□□□ 1.03
VIM-208ENST00000497849 LAMB1P07942 1786 aa21.46■■□□□ 1.03
VIM-208ENST00000497849 SASH1O94885 1247 aa21.45■■□□□ 1.02
VIM-208ENST00000497849 ALDH1A1P00352 501 aa21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms