RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 PDE4DIPQ5VU43 2346 aa18.23■□□□□ 0.51
VARS-227ENST00000489979 SCN9AQ15858 1988 aa18.23■□□□□ 0.51
VARS-227ENST00000489979 CHL1O00533 1208 aa18.23■□□□□ 0.51
VARS-227ENST00000489979 NEUROD2Q15784 382 aa18.23■□□□□ 0.51
VARS-227ENST00000489979 RTL5Q5HYW3 569 aaPredicted RBP18.23■□□□□ 0.51
VARS-227ENST00000489979 HDGFL1Q5TGJ6 251 aa18.23■□□□□ 0.51
VARS-227ENST00000489979 TRPA1O75762 1119 aa18.22■□□□□ 0.51
VARS-227ENST00000489979 KIF4BQ2VIQ3 1234 aa18.22■□□□□ 0.51
VARS-227ENST00000489979 TBC1D16Q8TBP0 767 aa18.22■□□□□ 0.51
VARS-227ENST00000489979 RNF186Q9NXI6 227 aa18.22■□□□□ 0.51
VARS-227ENST00000489979 IRS4O14654 1257 aaPredicted RBP18.21■□□□□ 0.51
VARS-227ENST00000489979 VIL1P09327 827 aaKnown RBP18.21■□□□□ 0.51
VARS-227ENST00000489979 RPS8P62241 208 aaKnown RBP18.21■□□□□ 0.51
VARS-227ENST00000489979 SULF1Q8IWU6 871 aa18.21■□□□□ 0.51
VARS-227ENST00000489979 CCDC146Q8IYE0 955 aa18.21■□□□□ 0.51
VARS-227ENST00000489979 GGA3Q9NZ52 723 aa18.21■□□□□ 0.51
VARS-227ENST00000489979 ASTN2O75129 1339 aaPredicted RBP18.21■□□□□ 0.51
VARS-227ENST00000489979 SLC10A3P09131 477 aa18.2■□□□□ 0.5
VARS-227ENST00000489979 ZC3H12CQ9C0D7 883 aaKnown RBP18.2■□□□□ 0.5
VARS-227ENST00000489979 DBF4Q9UBU7 674 aaPredicted RBP18.2■□□□□ 0.5
VARS-227ENST00000489979 SOX10P56693 466 aa18.19■□□□□ 0.5
VARS-227ENST00000489979 CDCA5Q96FF9 252 aa18.19■□□□□ 0.5
VARS-227ENST00000489979 CSRNP1Q96S65 589 aa18.19■□□□□ 0.5
VARS-227ENST00000489979 G3V3G9 751 aa18.18■□□□□ 0.5
VARS-227ENST00000489979 HOXB7P09629 217 aa18.18■□□□□ 0.5
VARS-227ENST00000489979 TRIM28Q13263 835 aaKnown RBP18.18■□□□□ 0.5
VARS-227ENST00000489979 DCAF8Q5TAQ9 597 aa18.18■□□□□ 0.5
VARS-227ENST00000489979 SEC31BQ9NQW1 1179 aa18.18■□□□□ 0.5
VARS-227ENST00000489979 PODXL2Q9NZ53 605 aa18.18■□□□□ 0.5
VARS-227ENST00000489979 TRIM35Q9UPQ4 493 aa18.18■□□□□ 0.5
VARS-227ENST00000489979 UFL1O94874 794 aa18.17■□□□□ 0.5
VARS-227ENST00000489979 RALBP1Q15311 655 aa18.17■□□□□ 0.5
VARS-227ENST00000489979 HYPKQ9NX55 129 aa18.17■□□□□ 0.5
VARS-227ENST00000489979 ANKIB1Q9P2G1 1089 aa18.17■□□□□ 0.5
VARS-227ENST00000489979 ZNF280AP59817 542 aaPredicted RBP18.16■□□□□ 0.5
VARS-227ENST00000489979 SCARF1Q14162 830 aa18.16■□□□□ 0.5
VARS-227ENST00000489979 ANGEL2Q5VTE6 544 aaKnown RBP18.16■□□□□ 0.5
VARS-227ENST00000489979 RASAL3Q86YV0 1011 aa18.16■□□□□ 0.5
VARS-227ENST00000489979 PCDH10Q9P2E7 1040 aa18.16■□□□□ 0.5
VARS-227ENST00000489979 GGA1Q9UJY5 639 aa18.16■□□□□ 0.5
VARS-227ENST00000489979 DUSP27Q5VZP5 1158 aa18.15■□□□□ 0.5
VARS-227ENST00000489979 RSBN1LQ6PCB5 846 aaPredicted RBP18.15■□□□□ 0.5
VARS-227ENST00000489979 CTU1Q7Z7A3 348 aaKnown RBP18.15■□□□□ 0.5
VARS-227ENST00000489979 ZBTB38Q8NAP3 1195 aaPredicted RBP18.15■□□□□ 0.5
VARS-227ENST00000489979 AGBL3Q8NEM8 1001 aa18.15■□□□□ 0.5
VARS-227ENST00000489979 PSME4Q14997 1843 aa18.14■□□□□ 0.5
VARS-227ENST00000489979 RIC3Q7Z5B4 369 aa18.14■□□□□ 0.49
VARS-227ENST00000489979 RUNDC1Q96C34 613 aa18.14■□□□□ 0.49
VARS-227ENST00000489979 REM2Q8IYK8 340 aaPredicted RBP18.13■□□□□ 0.49
VARS-227ENST00000489979 ZNF609O15014 1411 aa18.13■□□□□ 0.49
VARS-227ENST00000489979 PAPPA2Q9BXP8 1791 aa18.12■□□□□ 0.49
VARS-227ENST00000489979 HSP90B1P14625 803 aaKnown RBP18.12■□□□□ 0.49
VARS-227ENST00000489979 FKBP1BP68106 108 aa18.12■□□□□ 0.49
VARS-227ENST00000489979 GOLGA2Q08379 1002 aa18.12■□□□□ 0.49
VARS-227ENST00000489979 CCDC152Q4G0S7 254 aa18.12■□□□□ 0.49
VARS-227ENST00000489979 CCDC85AQ96PX6 553 aaPredicted RBP18.12■□□□□ 0.49
VARS-227ENST00000489979 MYD88Q99836 296 aa18.12■□□□□ 0.49
VARS-227ENST00000489979 MYOZ2Q9NPC6 264 aa18.12■□□□□ 0.49
VARS-227ENST00000489979 SCAF8Q9UPN6 1271 aaKnown RBP18.12■□□□□ 0.49
VARS-227ENST00000489979 USP17L8P0C7I0 530 aa18.11■□□□□ 0.49
VARS-227ENST00000489979 MOB2Q70IA6 237 aa18.11■□□□□ 0.49
VARS-227ENST00000489979 JARID2Q92833 1246 aaPredicted RBP18.11■□□□□ 0.49
VARS-227ENST00000489979 GMLQ99445 158 aa18.11■□□□□ 0.49
VARS-227ENST00000489979 PHAXQ9H814 394 aaKnown RBP18.11■□□□□ 0.49
VARS-227ENST00000489979 MBIPQ9NS73 344 aa18.11■□□□□ 0.49
VARS-227ENST00000489979 PITPNM2Q9BZ72 1349 aa18.1■□□□□ 0.49
VARS-227ENST00000489979 PDE8AO60658 829 aa18.1■□□□□ 0.49
VARS-227ENST00000489979 XDHP47989 1333 aa18.09■□□□□ 0.49
VARS-227ENST00000489979 USP17L3A6NCW0 530 aa18.09■□□□□ 0.49
VARS-227ENST00000489979 USP17L4A6NCW7 530 aa18.09■□□□□ 0.49
VARS-227ENST00000489979 UBE2Q2LH0YL09 131 aa18.09■□□□□ 0.49
VARS-227ENST00000489979 PCCAP05165 728 aaPredicted RBP18.09■□□□□ 0.49
VARS-227ENST00000489979 WDR43Q15061 677 aaKnown RBP eCLIP18.09■□□□□ 0.49
VARS-227ENST00000489979 USP17L1Q7RTZ2 530 aa18.09■□□□□ 0.49
VARS-227ENST00000489979 ANKRD18AQ8IVF6 992 aa18.09■□□□□ 0.49
VARS-227ENST00000489979 CCDC191Q8NCU4 936 aa18.09■□□□□ 0.49
VARS-227ENST00000489979 HPS5Q9UPZ3 1129 aa18.09■□□□□ 0.49
VARS-227ENST00000489979 MYBBP1AQ9BQG0 1328 aaKnown RBP18.08■□□□□ 0.49
VARS-227ENST00000489979 ATP2B4P23634 1241 aa18.08■□□□□ 0.48
VARS-227ENST00000489979 PRAMEF18Q5VWM3 479 aa18.08■□□□□ 0.48
VARS-227ENST00000489979 PODNQ7Z5L7 613 aa18.08■□□□□ 0.48
VARS-227ENST00000489979 CWC25Q9NXE8 425 aaPredicted RBP18.08■□□□□ 0.48
VARS-227ENST00000489979 HDAC9Q9UKV0 1011 aa18.08■□□□□ 0.48
VARS-227ENST00000489979 ELL2O00472 640 aaPredicted RBP18.07■□□□□ 0.48
VARS-227ENST00000489979 TBC1D8O95759 1140 aa18.07■□□□□ 0.48
VARS-227ENST00000489979 NBPF9Q3BBW0 867 aa18.07■□□□□ 0.48
VARS-227ENST00000489979 ZNF296Q8WUU4 475 aaPredicted RBP18.07■□□□□ 0.48
VARS-227ENST00000489979 ADAMTS8Q9UP79 889 aa18.07■□□□□ 0.48
VARS-227ENST00000489979 WTIPA6NIX2 430 aaPredicted RBP18.06■□□□□ 0.48
VARS-227ENST00000489979 ZNF853P0CG23 659 aa18.06■□□□□ 0.48
VARS-227ENST00000489979 TTLL12Q14166 644 aaPredicted RBP18.06■□□□□ 0.48
VARS-227ENST00000489979 PKN2Q16513 984 aaKnown RBP18.06■□□□□ 0.48
VARS-227ENST00000489979 PRPF38BQ5VTL8 546 aaKnown RBP18.06■□□□□ 0.48
VARS-227ENST00000489979 MXD3Q9BW11 206 aa18.06■□□□□ 0.48
VARS-227ENST00000489979 METTL22Q9BUU2 404 aaPredicted RBP18.05■□□□□ 0.48
VARS-227ENST00000489979 SPEF2Q9C093 1822 aa18.05■□□□□ 0.48
VARS-227ENST00000489979 MKRN3Q13064 507 aaKnown RBP18.04■□□□□ 0.48
VARS-227ENST00000489979 CDC5LQ99459 802 aaKnown RBP18.04■□□□□ 0.48
VARS-227ENST00000489979 MED23Q9ULK4 1368 aa18.04■□□□□ 0.48
VARS-227ENST00000489979 ZNF646O15015 1829 aaPredicted RBP18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms