RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 USP50Q70EL3 339 aaPredicted RBP21.48■■□□□ 1.03
VIM-205ENST00000485947 SLC51AQ86UW1 340 aa21.48■■□□□ 1.03
VIM-205ENST00000485947 SEC31BQ9NQW1 1179 aa21.48■■□□□ 1.03
VIM-205ENST00000485947 C6orf229H3BNL8 230 aa21.47■■□□□ 1.03
VIM-205ENST00000485947 SCNN1DP51172 638 aa21.47■■□□□ 1.03
VIM-205ENST00000485947 UBE3BQ7Z3V4 1068 aa21.47■■□□□ 1.03
VIM-205ENST00000485947 BSDC1Q9NW68 430 aaPredicted RBP21.47■■□□□ 1.03
VIM-205ENST00000485947 DUOX1Q9NRD9 1551 aa21.46■■□□□ 1.03
VIM-205ENST00000485947 EAPPQ56P03 285 aaPredicted RBP21.46■■□□□ 1.03
VIM-205ENST00000485947 MRPL50Q8N5N7 158 aaKnown RBP21.46■■□□□ 1.03
VIM-205ENST00000485947 TBC1D16Q8TBP0 767 aa21.46■■□□□ 1.03
VIM-205ENST00000485947 BCL2L13Q9BXK5 485 aa21.46■■□□□ 1.03
VIM-205ENST00000485947 GPRC5DQ9NZD1 345 aa21.46■■□□□ 1.03
VIM-205ENST00000485947 POLLQ9UGP5 575 aa21.46■■□□□ 1.03
VIM-205ENST00000485947 POTEIP0CG38 1075 aa21.45■■□□□ 1.02
VIM-205ENST00000485947 POTEJP0CG39 1038 aa21.45■■□□□ 1.02
VIM-205ENST00000485947 CASP7P55210 303 aa21.45■■□□□ 1.02
VIM-205ENST00000485947 BEND3Q5T5X7 828 aa21.45■■□□□ 1.02
VIM-205ENST00000485947 ZC3H12CQ9C0D7 883 aaKnown RBP21.45■■□□□ 1.02
VIM-205ENST00000485947 CREBZFQ9NS37 354 aa21.45■■□□□ 1.02
VIM-205ENST00000485947 ANKIB1Q9P2G1 1089 aa21.45■■□□□ 1.02
VIM-205ENST00000485947 GGA1Q9UJY5 639 aa21.45■■□□□ 1.02
VIM-205ENST00000485947 XDHP47989 1333 aa21.45■■□□□ 1.02
VIM-205ENST00000485947 PASKQ96RG2 1323 aa21.45■■□□□ 1.02
VIM-205ENST00000485947 IPO8O15397 1037 aaKnown RBP21.44■■□□□ 1.02
VIM-205ENST00000485947 CSF1RP07333 972 aa21.44■■□□□ 1.02
VIM-205ENST00000485947 MS4A1P11836 297 aa21.44■■□□□ 1.02
VIM-205ENST00000485947 PDE3AQ14432 1141 aa21.44■■□□□ 1.02
VIM-205ENST00000485947 ZKSCAN2Q63HK3 967 aa21.44■■□□□ 1.02
VIM-205ENST00000485947 JARID2Q92833 1246 aaPredicted RBP21.44■■□□□ 1.02
VIM-205ENST00000485947 ADARB2Q9NS39 739 aaKnown RBP21.44■■□□□ 1.02
VIM-205ENST00000485947 CLEC11AQ9Y240 323 aa21.44■■□□□ 1.02
VIM-205ENST00000485947 TAF1P21675 1872 aa21.43■■□□□ 1.02
VIM-205ENST00000485947 PLIN1O60240 522 aa21.43■■□□□ 1.02
VIM-205ENST00000485947 ALDH1L1O75891 902 aa21.43■■□□□ 1.02
VIM-205ENST00000485947 ITGBL1O95965 494 aaPredicted RBP21.43■■□□□ 1.02
VIM-205ENST00000485947 ATP2B4P23634 1241 aa21.43■■□□□ 1.02
VIM-205ENST00000485947 ARHGAP45Q92619 1136 aa21.43■■□□□ 1.02
VIM-205ENST00000485947 DPF2Q92785 391 aa21.43■■□□□ 1.02
VIM-205ENST00000485947 GREM2Q9H772 168 aa21.43■■□□□ 1.02
VIM-205ENST00000485947 RPS12P25398 132 aaKnown RBP21.42■■□□□ 1.02
VIM-205ENST00000485947 EPS15P42566 896 aa21.42■■□□□ 1.02
VIM-205ENST00000485947 LTBP1Q14766 1721 aa21.42■■□□□ 1.02
VIM-205ENST00000485947 ADAMTSL1Q8N6G6 1762 aa21.42■■□□□ 1.02
VIM-205ENST00000485947 FRAT1Q92837 279 aaPredicted RBP21.42■■□□□ 1.02
VIM-205ENST00000485947 PTPRCP08575 1304 aa21.41■■□□□ 1.02
VIM-205ENST00000485947 YDJCA8MPS7 323 aa21.41■■□□□ 1.02
VIM-205ENST00000485947 UFL1O94874 794 aa21.41■■□□□ 1.02
VIM-205ENST00000485947 IGHMBP2P38935 993 aaKnown RBP21.41■■□□□ 1.02
VIM-205ENST00000485947 CNTROBQ8N137 903 aa21.41■■□□□ 1.02
VIM-205ENST00000485947 ZC3H15Q8WU90 426 aaKnown RBP21.41■■□□□ 1.02
VIM-205ENST00000485947 CCDC85AQ96PX6 553 aaPredicted RBP21.41■■□□□ 1.02
VIM-205ENST00000485947 RAD17O75943 681 aa21.4■■□□□ 1.02
VIM-205ENST00000485947 GMPSP49915 693 aaPredicted RBP21.4■■□□□ 1.02
VIM-205ENST00000485947 F6X3S4 739 aa21.39■■□□□ 1.01
VIM-205ENST00000485947 H7C1D1 291 aa21.39■■□□□ 1.01
VIM-205ENST00000485947 RIMBP2O15034 1052 aa21.39■■□□□ 1.01
VIM-205ENST00000485947 ECE2O60344 883 aa21.39■■□□□ 1.01
VIM-205ENST00000485947 IRX6P78412 446 aaPredicted RBP21.39■■□□□ 1.01
VIM-205ENST00000485947 ATF7IPQ6VMQ6 1270 aa21.39■■□□□ 1.01
VIM-205ENST00000485947 PODNQ7Z5L7 613 aa21.39■■□□□ 1.01
VIM-205ENST00000485947 SRCIN1Q9C0H9 1055 aa21.39■■□□□ 1.01
VIM-205ENST00000485947 ANKRD2Q9GZV1 360 aa21.39■■□□□ 1.01
VIM-205ENST00000485947 NOB1Q9ULX3 412 aaKnown RBP21.39■■□□□ 1.01
VIM-205ENST00000485947 MINPP1Q9UNW1 487 aa21.39■■□□□ 1.01
VIM-205ENST00000485947 LEMD3Q9Y2U8 911 aa21.39■■□□□ 1.01
VIM-205ENST00000485947 MYH3P11055 1940 aa21.39■■□□□ 1.01
VIM-205ENST00000485947 COL4A1P02462 1669 aa21.38■■□□□ 1.01
VIM-205ENST00000485947 TMEM88BA6NKF7 163 aa21.38■■□□□ 1.01
VIM-205ENST00000485947 G3V3G9 751 aa21.38■■□□□ 1.01
VIM-205ENST00000485947 GRM8O00222 908 aa21.38■■□□□ 1.01
VIM-205ENST00000485947 ITGA6P23229 1130 aa21.38■■□□□ 1.01
VIM-205ENST00000485947 DCAF8Q5TAQ9 597 aa21.38■■□□□ 1.01
VIM-205ENST00000485947 MPHOSPH8Q99549 860 aa21.38■■□□□ 1.01
VIM-205ENST00000485947 DBNDD1Q9H9R9 158 aa21.38■■□□□ 1.01
VIM-205ENST00000485947 PGAP2Q9UHJ9 254 aa21.38■■□□□ 1.01
VIM-205ENST00000485947 ANKRD18BA2A2Z9 1011 aa21.37■■□□□ 1.01
VIM-205ENST00000485947 API5Q9BZZ5 524 aaKnown RBP21.37■■□□□ 1.01
VIM-205ENST00000485947 PRDM10Q9NQV6 1147 aa21.37■■□□□ 1.01
VIM-205ENST00000485947 C9orf78Q9NZ63 289 aaPredicted RBP21.37■■□□□ 1.01
VIM-205ENST00000485947 CNOT7Q9UIV1 285 aaKnown RBP21.37■■□□□ 1.01
VIM-205ENST00000485947 ZNF609O15014 1411 aa21.37■■□□□ 1.01
VIM-205ENST00000485947 MED23Q9ULK4 1368 aa21.36■■□□□ 1.01
VIM-205ENST00000485947 PSMD14O00487 310 aa21.36■■□□□ 1.01
VIM-205ENST00000485947 FOXN1O15353 648 aa21.36■■□□□ 1.01
VIM-205ENST00000485947 VIL1P09327 827 aaKnown RBP21.36■■□□□ 1.01
VIM-205ENST00000485947 IFIT5Q13325 482 aaKnown RBP21.36■■□□□ 1.01
VIM-205ENST00000485947 MAP1SQ66K74 1059 aaPredicted RBP21.36■■□□□ 1.01
VIM-205ENST00000485947 DZIP1LQ8IYY4 767 aaKnown RBP21.36■■□□□ 1.01
VIM-205ENST00000485947 TRIM27P14373 513 aa21.35■■□□□ 1.01
VIM-205ENST00000485947 CCT4P50991 539 aaKnown RBP21.35■■□□□ 1.01
VIM-205ENST00000485947 FOXO4P98177 505 aa21.35■■□□□ 1.01
VIM-205ENST00000485947 FAM161AQ3B820 660 aa21.35■■□□□ 1.01
VIM-205ENST00000485947 UTYO14607 1347 aa21.34■■□□□ 1.01
VIM-205ENST00000485947 DOK7Q18PE1 504 aa21.34■■□□□ 1.01
VIM-205ENST00000485947 C20orf194Q5TEA3 1177 aa21.34■■□□□ 1.01
VIM-205ENST00000485947 SLC4A10Q6U841 1118 aa21.34■■□□□ 1.01
VIM-205ENST00000485947 FTSJ3Q8IY81 847 aaKnown RBP21.34■■□□□ 1.01
VIM-205ENST00000485947 AGBL3Q8NEM8 1001 aa21.34■■□□□ 1.01
VIM-205ENST00000485947 MMP14P50281 582 aa21.33■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms