RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 TMC4Q7Z404 712 aa9.37□□□□□ -0.91
USP4-211ENST00000485450 JARID2Q92833 1246 aaPredicted RBP9.37□□□□□ -0.91
USP4-211ENST00000485450 CGNQ9P2M7 1197 aaKnown RBP9.37□□□□□ -0.91
USP4-211ENST00000485450 ZPR1O75312 459 aa9.37□□□□□ -0.91
USP4-211ENST00000485450 SERPINB2P05120 415 aa9.37□□□□□ -0.91
USP4-211ENST00000485450 GAS2L3Q86XJ1 694 aa9.37□□□□□ -0.91
USP4-211ENST00000485450 KAZALD1Q96I82 304 aa9.37□□□□□ -0.91
USP4-211ENST00000485450 UQCRHLA0A096LP55 91 aa9.36□□□□□ -0.91
USP4-211ENST00000485450 UQCRHP07919 91 aa9.36□□□□□ -0.91
USP4-211ENST00000485450 MMP10P09238 476 aa9.36□□□□□ -0.91
USP4-211ENST00000485450 MSNP26038 577 aaKnown RBP9.36□□□□□ -0.91
USP4-211ENST00000485450 FOXO4P98177 505 aa9.36□□□□□ -0.91
USP4-211ENST00000485450 TBC1D32Q96NH3 1257 aa9.36□□□□□ -0.91
USP4-211ENST00000485450 R3HCC1Q9Y3T6 440 aaKnown RBP9.36□□□□□ -0.91
USP4-211ENST00000485450 CDK5RAP2Q96SN8 1893 aa9.36□□□□□ -0.91
USP4-211ENST00000485450 GCKRQ14397 625 aa9.36□□□□□ -0.91
USP4-211ENST00000485450 HS1BP3Q53T59 392 aa9.36□□□□□ -0.91
USP4-211ENST00000485450 ZNF500O60304 480 aaPredicted RBP9.35□□□□□ -0.91
USP4-211ENST00000485450 DDX58O95786 925 aaKnown RBP9.35□□□□□ -0.91
USP4-211ENST00000485450 DNTTIP2Q5QJE6 756 aaKnown RBP9.35□□□□□ -0.91
USP4-211ENST00000485450 DNAAF4Q8WXU2 420 aa9.35□□□□□ -0.91
USP4-211ENST00000485450 SYT17Q9BSW7 474 aa9.35□□□□□ -0.91
USP4-211ENST00000485450 SCN9AQ15858 1988 aa9.35□□□□□ -0.91
USP4-211ENST00000485450 POLD1P28340 1107 aa9.35□□□□□ -0.91
USP4-211ENST00000485450 PSDA5PKW4 1024 aaPredicted RBP9.35□□□□□ -0.91
USP4-211ENST00000485450 TULP2O00295 520 aa9.35□□□□□ -0.91
USP4-211ENST00000485450 PDE6BP35913 854 aa9.35□□□□□ -0.91
USP4-211ENST00000485450 PPP1R42Q7Z4L9 355 aa9.35□□□□□ -0.91
USP4-211ENST00000485450 SLC4A2P04920 1241 aa9.34□□□□□ -0.91
USP4-211ENST00000485450 NEUROD2Q15784 382 aa9.34□□□□□ -0.91
USP4-211ENST00000485450 TAF3Q5VWG9 929 aa9.34□□□□□ -0.91
USP4-211ENST00000485450 EP400NLQ6ZTU2 488 aa9.34□□□□□ -0.91
USP4-211ENST00000485450 PARP3Q9Y6F1 533 aa9.34□□□□□ -0.91
USP4-211ENST00000485450 SMIM5Q71RC9 77 aa9.34□□□□□ -0.91
USP4-211ENST00000485450 NPR1P16066 1061 aa9.34□□□□□ -0.91
USP4-211ENST00000485450 CBX1P83916 185 aa9.34□□□□□ -0.91
USP4-211ENST00000485450 PDE3AQ14432 1141 aa9.34□□□□□ -0.91
USP4-211ENST00000485450 PSMD1Q99460 953 aa9.34□□□□□ -0.91
USP4-211ENST00000485450 UTP14AQ9BVJ6 771 aaKnown RBP9.34□□□□□ -0.91
USP4-211ENST00000485450 MAP3K2Q9Y2U5 619 aa9.34□□□□□ -0.91
USP4-211ENST00000485450 RFX5P48382 616 aaPredicted RBP9.33□□□□□ -0.92
USP4-211ENST00000485450 CCT4P50991 539 aaKnown RBP9.33□□□□□ -0.92
USP4-211ENST00000485450 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.33□□□□□ -0.92
USP4-211ENST00000485450 SETDB2Q96T68 719 aa9.33□□□□□ -0.92
USP4-211ENST00000485450 UPF2Q9HAU5 1272 aaKnown RBP9.33□□□□□ -0.92
USP4-211ENST00000485450 MYH7P12883 1935 aa9.33□□□□□ -0.92
USP4-211ENST00000485450 MASTLQ96GX5 879 aa9.33□□□□□ -0.92
USP4-211ENST00000485450 API5Q9BZZ5 524 aaKnown RBP9.33□□□□□ -0.92
USP4-211ENST00000485450 FAM193AP78312 1265 aa9.32□□□□□ -0.92
USP4-211ENST00000485450 SKOR2Q2VWA4 1001 aaPredicted RBP9.32□□□□□ -0.92
USP4-211ENST00000485450 ATF7IPQ6VMQ6 1270 aa9.32□□□□□ -0.92
USP4-211ENST00000485450 ANKRD44Q8N8A2 993 aa9.32□□□□□ -0.92
USP4-211ENST00000485450 STK31Q9BXU1 1019 aa9.32□□□□□ -0.92
USP4-211ENST00000485450 FHDC1Q9C0D6 1143 aaPredicted RBP9.32□□□□□ -0.92
USP4-211ENST00000485450 CWC25Q9NXE8 425 aaPredicted RBP9.32□□□□□ -0.92
USP4-211ENST00000485450 TBC1D2BQ9UPU7 963 aa9.32□□□□□ -0.92
USP4-211ENST00000485450 PI4KAP2A4QPH2 592 aa9.32□□□□□ -0.92
USP4-211ENST00000485450 CLGNO14967 610 aa9.32□□□□□ -0.92
USP4-211ENST00000485450 ZBTB7AO95365 584 aa9.32□□□□□ -0.92
USP4-211ENST00000485450 POLA2Q14181 598 aa9.32□□□□□ -0.92
USP4-211ENST00000485450 TPTE2Q6XPS3 522 aa9.32□□□□□ -0.92
USP4-211ENST00000485450 PI4KAP1Q8N8J0 262 aa9.32□□□□□ -0.92
USP4-211ENST00000485450 NOL7Q9UMY1 257 aaKnown RBP9.32□□□□□ -0.92
USP4-211ENST00000485450 SH3TC1Q8TE82 1336 aa9.32□□□□□ -0.92
USP4-211ENST00000485450 IGSF3O75054 1194 aa9.32□□□□□ -0.92
USP4-211ENST00000485450 TRIM27P14373 513 aa9.32□□□□□ -0.92
USP4-211ENST00000485450 CSPP1Q1MSJ5 1256 aa9.32□□□□□ -0.92
USP4-211ENST00000485450 CC2D2BQ6DHV5 1058 aa9.32□□□□□ -0.92
USP4-211ENST00000485450 C3orf67Q6ZVT6 689 aa9.32□□□□□ -0.92
USP4-211ENST00000485450 USP44Q9H0E7 712 aa9.32□□□□□ -0.92
USP4-211ENST00000485450 ERFEQ4G0M1 354 aa9.31□□□□□ -0.92
USP4-211ENST00000485450 GEMIN8Q9NWZ8 242 aaKnown RBP9.31□□□□□ -0.92
USP4-211ENST00000485450 PDE8AO60658 829 aa9.31□□□□□ -0.92
USP4-211ENST00000485450 PHF14O94880 888 aa9.31□□□□□ -0.92
USP4-211ENST00000485450 PTMSP20962 102 aa9.31□□□□□ -0.92
USP4-211ENST00000485450 CDK11BP21127 795 aaKnown RBP9.31□□□□□ -0.92
USP4-211ENST00000485450 NASPP49321 788 aaPredicted RBP9.31□□□□□ -0.92
USP4-211ENST00000485450 CNBD1Q8NA66 436 aa9.31□□□□□ -0.92
USP4-211ENST00000485450 YY1AP1Q9H869 796 aa9.31□□□□□ -0.92
USP4-211ENST00000485450 NIP7Q9Y221 180 aaKnown RBP eCLIP9.31□□□□□ -0.92
USP4-211ENST00000485450 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.31□□□□□ -0.92
USP4-211ENST00000485450 ST5P78524 1137 aa9.31□□□□□ -0.92
USP4-211ENST00000485450 SOGA3Q5TF21 947 aa9.31□□□□□ -0.92
USP4-211ENST00000485450 SASS6Q6UVJ0 657 aa9.31□□□□□ -0.92
USP4-211ENST00000485450 VGLL2Q8N8G2 317 aa9.31□□□□□ -0.92
USP4-211ENST00000485450 NLGN2Q8NFZ4 835 aa9.31□□□□□ -0.92
USP4-211ENST00000485450 ZBTB7BO15156 539 aaPredicted RBP9.3□□□□□ -0.92
USP4-211ENST00000485450 MYL6BP14649 208 aa9.3□□□□□ -0.92
USP4-211ENST00000485450 DDIT3P35638 169 aa9.3□□□□□ -0.92
USP4-211ENST00000485450 PDS5AQ29RF7 1337 aaKnown RBP9.3□□□□□ -0.92
USP4-211ENST00000485450 CTSWP56202 376 aa9.3□□□□□ -0.92
USP4-211ENST00000485450 TTLL11Q8NHH1 800 aa9.3□□□□□ -0.92
USP4-211ENST00000485450 CIAO1O76071 339 aa9.3□□□□□ -0.92
USP4-211ENST00000485450 IGHDP01880 384 aa9.3□□□□□ -0.92
USP4-211ENST00000485450 YBX3P16989 372 aaKnown RBP eCLIP9.3□□□□□ -0.92
USP4-211ENST00000485450 NOB1Q9ULX3 412 aaKnown RBP9.3□□□□□ -0.92
USP4-211ENST00000485450 GRM8O00222 908 aa9.29□□□□□ -0.92
USP4-211ENST00000485450 PIP4K2AP48426 406 aaPredicted RBP9.29□□□□□ -0.92
USP4-211ENST00000485450 PRELPP51888 382 aa9.29□□□□□ -0.92
USP4-211ENST00000485450 GRAPQ13588 217 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms