RNA–Protein interactions for RNA: ENST00000478938.1

SDF4-206, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,591 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-206ENST00000478938 CCAR1Q8IX12 1150 aaKnown RBP24.62■■□□□ 1.53
SDF4-206ENST00000478938 DDX11Q96FC9 970 aa24.62■■□□□ 1.53
SDF4-206ENST00000478938 TCEANC2Q96MN5 208 aa24.62■■□□□ 1.53
SDF4-206ENST00000478938 SUGCTQ9HAC7 445 aa24.62■■□□□ 1.53
SDF4-206ENST00000478938 MRFAP1Q9Y605 127 aa24.62■■□□□ 1.53
SDF4-206ENST00000478938 PREX1Q8TCU6 1659 aa24.62■■□□□ 1.53
SDF4-206ENST00000478938 CCDC189A1A4V9 331 aa24.62■■□□□ 1.53
SDF4-206ENST00000478938 CCP110O43303 1012 aa24.62■■□□□ 1.53
SDF4-206ENST00000478938 MAP3K9P80192 1104 aa24.62■■□□□ 1.53
SDF4-206ENST00000478938 CNNM3Q8NE01 707 aa24.62■■□□□ 1.53
SDF4-206ENST00000478938 ANKRD26Q9UPS8 1709 aa24.62■■□□□ 1.53
SDF4-206ENST00000478938 GOLGA1Q92805 767 aa24.61■■□□□ 1.53
SDF4-206ENST00000478938 UTP14AQ9BVJ6 771 aaKnown RBP24.61■■□□□ 1.53
SDF4-206ENST00000478938 DLG5Q8TDM6 1919 aa24.61■■□□□ 1.53
SDF4-206ENST00000478938 ADGRL3Q9HAR2 1447 aa24.61■■□□□ 1.53
SDF4-206ENST00000478938 CTAGE5O15320 804 aa24.61■■□□□ 1.53
SDF4-206ENST00000478938 TXLNAP40222 546 aa24.61■■□□□ 1.53
SDF4-206ENST00000478938 GOLGA8FQ08AF8 430 aa24.61■■□□□ 1.53
SDF4-206ENST00000478938 GOLGA8DPQ0D2H9 430 aa24.61■■□□□ 1.53
SDF4-206ENST00000478938 HECW2Q9P2P5 1572 aa24.61■■□□□ 1.53
SDF4-206ENST00000478938 ABCC1P33527 1531 aa24.61■■□□□ 1.53
SDF4-206ENST00000478938 A0A087WUV0 522 aaPredicted RBP24.6■■□□□ 1.53
SDF4-206ENST00000478938 VWA3AA6NCI4 1184 aa24.6■■□□□ 1.53
SDF4-206ENST00000478938 CPSF1Q10570 1443 aaKnown RBP24.6■■□□□ 1.53
SDF4-206ENST00000478938 DEPDC5O75140 1603 aa24.6■■□□□ 1.53
SDF4-206ENST00000478938 AOX1Q06278 1338 aa24.6■■□□□ 1.53
SDF4-206ENST00000478938 PSME1Q06323 249 aa24.6■■□□□ 1.53
SDF4-206ENST00000478938 PI4K2BQ8TCG2 481 aa24.6■■□□□ 1.53
SDF4-206ENST00000478938 STK3Q13188 491 aa24.59■■□□□ 1.53
SDF4-206ENST00000478938 FMNL2Q96PY5 1086 aa24.59■■□□□ 1.53
SDF4-206ENST00000478938 FTOQ9C0B1 505 aaKnown RBP eCLIP24.59■■□□□ 1.536e-7■■■□□ 15
SDF4-206ENST00000478938 CCDC196A0A1B0GTZ2 297 aa24.59■■□□□ 1.53
SDF4-206ENST00000478938 LIG3P49916 1009 aa24.59■■□□□ 1.53
SDF4-206ENST00000478938 GNG11P61952 73 aa24.59■■□□□ 1.53
SDF4-206ENST00000478938 BRD3Q15059 726 aa24.59■■□□□ 1.53
SDF4-206ENST00000478938 BEND6Q5SZJ8 279 aaPredicted RBP24.59■■□□□ 1.53
SDF4-206ENST00000478938 RAB11FIP3O75154 756 aa24.58■■□□□ 1.53
SDF4-206ENST00000478938 TERF2IPQ9NYB0 399 aa24.58■■□□□ 1.53
SDF4-206ENST00000478938 PPFIA4O75335 1185 aa24.58■■□□□ 1.53
SDF4-206ENST00000478938 NPM1P06748 294 aaKnown RBP eCLIP24.58■■□□□ 1.53
SDF4-206ENST00000478938 KCNV1Q6PIU1 500 aa24.58■■□□□ 1.53
SDF4-206ENST00000478938 ASXL2Q76L83 1435 aa24.58■■□□□ 1.53
SDF4-206ENST00000478938 HDXQ7Z353 690 aa24.58■■□□□ 1.53
SDF4-206ENST00000478938 NAT10Q9H0A0 1025 aaKnown RBP24.58■■□□□ 1.53
SDF4-206ENST00000478938 ZFYVE9O95405 1425 aa24.57■■□□□ 1.52
SDF4-206ENST00000478938 KINO60870 393 aaKnown RBP24.57■■□□□ 1.52
SDF4-206ENST00000478938 RESTQ13127 1097 aa24.57■■□□□ 1.52
SDF4-206ENST00000478938 JAKMIP3Q5VZ66 844 aa24.57■■□□□ 1.52
SDF4-206ENST00000478938 DHX58Q96C10 678 aa24.57■■□□□ 1.52
SDF4-206ENST00000478938 MPHOSPH8Q99549 860 aa24.57■■□□□ 1.52
SDF4-206ENST00000478938 CAMSAP1Q5T5Y3 1602 aa24.57■■□□□ 1.52
SDF4-206ENST00000478938 ABCA9Q8IUA7 1624 aa24.57■■□□□ 1.52
SDF4-206ENST00000478938 ERLIN2O94905 339 aa24.57■■□□□ 1.52
SDF4-206ENST00000478938 HNRNPH1P31943 449 aaKnown RBP24.57■■□□□ 1.52
SDF4-206ENST00000478938 FBXW10Q5XX13 1052 aa24.57■■□□□ 1.52
SDF4-206ENST00000478938 CCT4P50991 539 aaKnown RBP24.56■■□□□ 1.52
SDF4-206ENST00000478938 ATP8B2P98198 1209 aa24.56■■□□□ 1.52
SDF4-206ENST00000478938 CCDC102AQ96A19 550 aa24.56■■□□□ 1.52
SDF4-206ENST00000478938 TM6SF1Q9BZW5 370 aa24.56■■□□□ 1.52
SDF4-206ENST00000478938 DPCR1Q3MIW9 517 aa24.56■■□□□ 1.52
SDF4-206ENST00000478938 PTPN21Q16825 1174 aa24.55■■□□□ 1.52
SDF4-206ENST00000478938 CCDC73Q6ZRK6 1079 aa24.55■■□□□ 1.52
SDF4-206ENST00000478938 JAK2O60674 1132 aa24.55■■□□□ 1.52
SDF4-206ENST00000478938 EIF3JO75822 258 aaKnown RBP24.55■■□□□ 1.52
SDF4-206ENST00000478938 CNTROBQ8N137 903 aa24.55■■□□□ 1.52
SDF4-206ENST00000478938 FAM204AQ9H8W3 233 aa24.55■■□□□ 1.52
SDF4-206ENST00000478938 SCP2P22307 547 aa24.54■■□□□ 1.52
SDF4-206ENST00000478938 NUTM2DQ5VT03 806 aaPredicted RBP24.54■■□□□ 1.52
SDF4-206ENST00000478938 PNKPQ96T60 521 aa24.54■■□□□ 1.52
SDF4-206ENST00000478938 GIGYF1O75420 1035 aaPredicted RBP24.54■■□□□ 1.52
SDF4-206ENST00000478938 ANKZF1Q9H8Y5 726 aa24.54■■□□□ 1.52
SDF4-206ENST00000478938 PPP2R2CQ9Y2T4 447 aa24.54■■□□□ 1.52
SDF4-206ENST00000478938 EMILIN1Q9Y6C2 1016 aa24.54■■□□□ 1.52
SDF4-206ENST00000478938 SETD1AO15047 1707 aaKnown RBP24.54■■□□□ 1.52
SDF4-206ENST00000478938 KIF3BO15066 747 aa24.53■■□□□ 1.52
SDF4-206ENST00000478938 EIF5P55010 431 aaKnown RBP24.53■■□□□ 1.52
SDF4-206ENST00000478938 PPP2R5AQ15172 486 aa24.53■■□□□ 1.52
SDF4-206ENST00000478938 CLIC6Q96NY7 704 aa24.53■■□□□ 1.52
SDF4-206ENST00000478938 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.53■■□□□ 1.52
SDF4-206ENST00000478938 BRF1Q92994 677 aa24.53■■□□□ 1.52
SDF4-206ENST00000478938 SENP3Q9H4L4 574 aaPredicted RBP24.53■■□□□ 1.52
SDF4-206ENST00000478938 ABCB6Q9NP58 842 aa24.53■■□□□ 1.52
SDF4-206ENST00000478938 KIFC2Q96AC6 838 aa24.52■■□□□ 1.52
SDF4-206ENST00000478938 ABCC3O15438 1527 aa24.52■■□□□ 1.52
SDF4-206ENST00000478938 IL13P35225 146 aa24.52■■□□□ 1.52
SDF4-206ENST00000478938 RPAINQ86UA6 219 aa24.52■■□□□ 1.52
SDF4-206ENST00000478938 ZSCAN12O43309 604 aa24.51■■□□□ 1.51
SDF4-206ENST00000478938 HAP1P54257 671 aaPredicted RBP24.51■■□□□ 1.51
SDF4-206ENST00000478938 L1RE1Q9UN81 338 aa24.51■■□□□ 1.51
SDF4-206ENST00000478938 ARHGEF28Q8N1W1 1705 aaKnown RBP24.51■■□□□ 1.51
SDF4-206ENST00000478938 EXOC5O00471 708 aa24.51■■□□□ 1.51
SDF4-206ENST00000478938 HSP90B2PQ58FF3 399 aa24.51■■□□□ 1.51
SDF4-206ENST00000478938 ENGASEQ8NFI3 743 aa24.51■■□□□ 1.51
SDF4-206ENST00000478938 HNRNPLLQ8WVV9 542 aaKnown RBP24.51■■□□□ 1.51
SDF4-206ENST00000478938 PUF60Q9UHX1 559 aaKnown RBP24.51■■□□□ 1.51
SDF4-206ENST00000478938 CFAP45Q9UL16 551 aa24.51■■□□□ 1.51
SDF4-206ENST00000478938 ZFYVE16Q7Z3T8 1539 aa24.51■■□□□ 1.51
SDF4-206ENST00000478938 LMOD1P29536 600 aaPredicted RBP24.5■■□□□ 1.51
SDF4-206ENST00000478938 FOSBP53539 338 aa24.5■■□□□ 1.51
SDF4-206ENST00000478938 CHMP4BP1P59074 171 aa24.5■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 160.5 ms