RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 CPSF1Q10570 1443 aaKnown RBP7.77□□□□□ -1.17
HMGB1-207ENST00000468384 CFAP47Q6ZTR5 3102 aa7.76□□□□□ -1.17
HMGB1-207ENST00000468384 TPRP12270 2363 aaKnown RBP7.76□□□□□ -1.17
HMGB1-207ENST00000468384 TRIM6-TRIM34B2RNG4 842 aa7.76□□□□□ -1.17
HMGB1-207ENST00000468384 TRAPPC3LQ5T215 181 aa7.76□□□□□ -1.17
HMGB1-207ENST00000468384 ANKRD24Q8TF21 1146 aa7.76□□□□□ -1.17
HMGB1-207ENST00000468384 NLRP2Q9NX02 1062 aa7.76□□□□□ -1.17
HMGB1-207ENST00000468384 NXF1Q9UBU9 619 aaKnown RBP7.76□□□□□ -1.17
HMGB1-207ENST00000468384 EVI5O60447 810 aa7.75□□□□□ -1.17
HMGB1-207ENST00000468384 FKTNO75072 461 aa7.75□□□□□ -1.17
HMGB1-207ENST00000468384 DDR1Q08345 913 aa7.75□□□□□ -1.17
HMGB1-207ENST00000468384 FAM109BQ6ICB4 259 aaPredicted RBP7.75□□□□□ -1.17
HMGB1-207ENST00000468384 ARHGEF25Q86VW2 580 aa7.75□□□□□ -1.17
HMGB1-207ENST00000468384 FAM161BQ96MY7 647 aa7.75□□□□□ -1.17
HMGB1-207ENST00000468384 TRIM17Q9Y577 477 aa7.75□□□□□ -1.17
HMGB1-207ENST00000468384 PCDHGA10Q9Y5H3 936 aa7.75□□□□□ -1.17
HMGB1-207ENST00000468384 STK25O00506 426 aa7.74□□□□□ -1.17
HMGB1-207ENST00000468384 C21orf2O43822 256 aa7.74□□□□□ -1.17
HMGB1-207ENST00000468384 ADAM23O75077 832 aa7.74□□□□□ -1.17
HMGB1-207ENST00000468384 BMP8BP34820 402 aa7.74□□□□□ -1.17
HMGB1-207ENST00000468384 ZNF157P51786 506 aaPredicted RBP7.74□□□□□ -1.17
HMGB1-207ENST00000468384 OTOP1Q7RTM1 612 aa7.74□□□□□ -1.17
HMGB1-207ENST00000468384 Q8N3U1 123 aa7.74□□□□□ -1.17
HMGB1-207ENST00000468384 ADAMTS19Q8TE59 1207 aa7.74□□□□□ -1.17
HMGB1-207ENST00000468384 STK24Q9Y6E0 443 aa7.74□□□□□ -1.17
HMGB1-207ENST00000468384 ADGRF5Q8IZF2 1346 aa7.74□□□□□ -1.17
HMGB1-207ENST00000468384 WASLO00401 505 aaPredicted RBP7.73□□□□□ -1.17
HMGB1-207ENST00000468384 NHLH1Q02575 133 aa7.73□□□□□ -1.17
HMGB1-207ENST00000468384 ACAP1Q15027 740 aa7.73□□□□□ -1.17
HMGB1-207ENST00000468384 SLC4A8Q2Y0W8 1093 aa7.73□□□□□ -1.17
HMGB1-207ENST00000468384 TMEM31Q5JXX7 168 aa7.73□□□□□ -1.17
HMGB1-207ENST00000468384 ARHGEF1Q92888 912 aaKnown RBP7.73□□□□□ -1.17
HMGB1-207ENST00000468384 UHRF1Q96T88 793 aaPredicted RBP7.73□□□□□ -1.17
HMGB1-207ENST00000468384 CDX2Q99626 313 aaPredicted RBP7.73□□□□□ -1.17
HMGB1-207ENST00000468384 HTATIP2Q9BUP3 242 aa7.73□□□□□ -1.17
HMGB1-207ENST00000468384 GLIS2Q9BZE0 524 aaPredicted RBP7.73□□□□□ -1.17
HMGB1-207ENST00000468384 TOR4AQ9NXH8 423 aa7.73□□□□□ -1.17
HMGB1-207ENST00000468384 POGKQ9P215 609 aa7.73□□□□□ -1.17
HMGB1-207ENST00000468384 TIMELESSQ9UNS1 1208 aa7.73□□□□□ -1.17
HMGB1-207ENST00000468384 NAV2Q8IVL1 2488 aa7.73□□□□□ -1.17
HMGB1-207ENST00000468384 USP50Q70EL3 339 aaPredicted RBP7.72□□□□□ -1.17
HMGB1-207ENST00000468384 GPC2Q8N158 579 aa7.72□□□□□ -1.17
HMGB1-207ENST00000468384 ZNF333Q96JL9 665 aa7.72□□□□□ -1.17
HMGB1-207ENST00000468384 RGPD5Q99666 1765 aa7.71□□□□□ -1.17
HMGB1-207ENST00000468384 FER1L6Q2WGJ9 1857 aa7.71□□□□□ -1.18
HMGB1-207ENST00000468384 C5orf42Q9H799 3197 aa7.71□□□□□ -1.18
HMGB1-207ENST00000468384 ZPR1O75312 459 aa7.71□□□□□ -1.18
HMGB1-207ENST00000468384 SLC10A3P09131 477 aa7.71□□□□□ -1.18
HMGB1-207ENST00000468384 LMOD1P29536 600 aaPredicted RBP7.71□□□□□ -1.18
HMGB1-207ENST00000468384 EPS15P42566 896 aa7.71□□□□□ -1.18
HMGB1-207ENST00000468384 PLA2G2CQ5R387 149 aa7.71□□□□□ -1.18
HMGB1-207ENST00000468384 ANKLE1Q8NAG6 615 aa7.71□□□□□ -1.18
HMGB1-207ENST00000468384 GDF15Q99988 308 aa7.71□□□□□ -1.18
HMGB1-207ENST00000468384 PTPN22Q9Y2R2 807 aa7.71□□□□□ -1.18
HMGB1-207ENST00000468384 RTCBQ9Y3I0 505 aaKnown RBP7.71□□□□□ -1.18
HMGB1-207ENST00000468384 USP34Q70CQ2 3546 aa7.7□□□□□ -1.18
HMGB1-207ENST00000468384 RFC4P35249 363 aa7.7□□□□□ -1.18
HMGB1-207ENST00000468384 C2CD5Q86YS7 1000 aa7.7□□□□□ -1.18
HMGB1-207ENST00000468384 SMARCC1Q92922 1105 aaPredicted RBP7.7□□□□□ -1.18
HMGB1-207ENST00000468384 NUDT16Q96DE0 195 aaKnown RBP7.7□□□□□ -1.18
HMGB1-207ENST00000468384 ACACBO00763 2458 aa7.69□□□□□ -1.18
HMGB1-207ENST00000468384 TULP1O00294 542 aaPredicted RBP7.69□□□□□ -1.18
HMGB1-207ENST00000468384 ITGB8P26012 769 aa7.69□□□□□ -1.18
HMGB1-207ENST00000468384 EPHX3Q9H6B9 360 aa7.69□□□□□ -1.18
HMGB1-207ENST00000468384 SENP2Q9HC62 589 aa7.69□□□□□ -1.18
HMGB1-207ENST00000468384 CNTNAP4Q9C0A0 1308 aa7.69□□□□□ -1.18
HMGB1-207ENST00000468384 SMG6Q86US8 1419 aaKnown RBP7.69□□□□□ -1.18
HMGB1-207ENST00000468384 KIF1BO60333 1816 aa7.68□□□□□ -1.18
HMGB1-207ENST00000468384 LOC102724428A0A0B4J2F2 783 aa7.68□□□□□ -1.18
HMGB1-207ENST00000468384 H0YIN7 160 aa7.68□□□□□ -1.18
HMGB1-207ENST00000468384 POLRMTO00411 1230 aaKnown RBP7.68□□□□□ -1.18
HMGB1-207ENST00000468384 SIK1P57059 783 aa7.68□□□□□ -1.18
HMGB1-207ENST00000468384 ITPK1Q13572 414 aa7.68□□□□□ -1.18
HMGB1-207ENST00000468384 MPRIPQ6WCQ1 1025 aa7.68□□□□□ -1.18
HMGB1-207ENST00000468384 ERMP1Q7Z2K6 904 aa7.68□□□□□ -1.18
HMGB1-207ENST00000468384 TDHQ8IZJ6 230 aa7.68□□□□□ -1.18
HMGB1-207ENST00000468384 NUP155O75694 1391 aa7.68□□□□□ -1.18
HMGB1-207ENST00000468384 VPS8Q8N3P4 1428 aa7.68□□□□□ -1.18
HMGB1-207ENST00000468384 H3BM21 787 aa7.67□□□□□ -1.18
HMGB1-207ENST00000468384 FZD9O00144 591 aa7.67□□□□□ -1.18
HMGB1-207ENST00000468384 SMAPO00193 183 aa7.67□□□□□ -1.18
HMGB1-207ENST00000468384 TLL1O43897 1013 aa7.67□□□□□ -1.18
HMGB1-207ENST00000468384 SCNN1DP51172 638 aa7.67□□□□□ -1.18
HMGB1-207ENST00000468384 R3HDMLQ9H3Y0 253 aa7.67□□□□□ -1.18
HMGB1-207ENST00000468384 GTF3C3Q9Y5Q9 886 aa7.67□□□□□ -1.18
HMGB1-207ENST00000468384 ASH1LQ9NR48 2969 aaKnown RBP7.67□□□□□ -1.18
HMGB1-207ENST00000468384 ZFHX2Q9C0A1 2572 aaPredicted RBP7.66□□□□□ -1.18
HMGB1-207ENST00000468384 DLEC1Q9Y238 1755 aa7.66□□□□□ -1.18
HMGB1-207ENST00000468384 NCOR2Q9Y618 2525 aa7.66□□□□□ -1.18
HMGB1-207ENST00000468384 IGHA1P01876 353 aa7.66□□□□□ -1.18
HMGB1-207ENST00000468384 UBE2Q1Q7Z7E8 422 aa7.66□□□□□ -1.18
HMGB1-207ENST00000468384 ASB2Q96Q27 587 aa7.66□□□□□ -1.18
HMGB1-207ENST00000468384 GJA3Q9Y6H8 435 aa7.66□□□□□ -1.18
HMGB1-207ENST00000468384 GPR37L1O60883 481 aa7.65□□□□□ -1.18
HMGB1-207ENST00000468384 RNF40O75150 1001 aa7.65□□□□□ -1.18
HMGB1-207ENST00000468384 S1PR4O95977 384 aa7.65□□□□□ -1.18
HMGB1-207ENST00000468384 MYCP01106 439 aaPredicted RBP7.65□□□□□ -1.18
HMGB1-207ENST00000468384 ZNF318Q5VUA4 2279 aa7.65□□□□□ -1.18
HMGB1-207ENST00000468384 USP31Q70CQ4 1352 aa7.65□□□□□ -1.18
HMGB1-207ENST00000468384 USP38Q8NB14 1042 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 91.4 ms