RNA–Protein interactions for RNA: ENST00000460408.5

RFC4-211, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 628 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-211ENST00000460408 MICAL2O94851 1124 aa6.3□□□□□ -1.4
RFC4-211ENST00000460408 EGFRP00533 1210 aa6.3□□□□□ -1.4
RFC4-211ENST00000460408 SWI5Q1ZZU3 235 aa6.3□□□□□ -1.4
RFC4-211ENST00000460408 CLP1Q92989 425 aaKnown RBP6.3□□□□□ -1.4
RFC4-211ENST00000460408 SRA1Q9HD15 236 aaKnown RBP6.3□□□□□ -1.4
RFC4-211ENST00000460408 F8W735 103 aaPredicted RBP6.29□□□□□ -1.4
RFC4-211ENST00000460408 BRD1O95696 1058 aa6.29□□□□□ -1.4
RFC4-211ENST00000460408 CD97P48960 835 aa6.29□□□□□ -1.4
RFC4-211ENST00000460408 DGKZQ13574 1117 aa6.29□□□□□ -1.4
RFC4-211ENST00000460408 Q6ZS46 218 aa6.29□□□□□ -1.4
RFC4-211ENST00000460408 HFE2Q6ZVN8 426 aa6.29□□□□□ -1.4
RFC4-211ENST00000460408 MYO19Q96H55 970 aa6.29□□□□□ -1.4
RFC4-211ENST00000460408 QTRT2Q9H974 415 aaKnown RBP6.29□□□□□ -1.4
RFC4-211ENST00000460408 TLR7Q9NYK1 1049 aaKnown RBP6.29□□□□□ -1.4
RFC4-211ENST00000460408 KRTAP4-8A0A0G2JLE6 195 aa6.28□□□□□ -1.4
RFC4-211ENST00000460408 OPLAHO14841 1288 aa6.28□□□□□ -1.4
RFC4-211ENST00000460408 ALX3O95076 343 aa6.28□□□□□ -1.4
RFC4-211ENST00000460408 EIF2AK2P19525 551 aaKnown RBP6.28□□□□□ -1.4
RFC4-211ENST00000460408 C11orf91Q3C1V1 193 aa6.28□□□□□ -1.4
RFC4-211ENST00000460408 PHLDB3Q6NSJ2 640 aa6.28□□□□□ -1.4
RFC4-211ENST00000460408 PLD4Q96BZ4 506 aa6.28□□□□□ -1.4
RFC4-211ENST00000460408 LOC102724428A0A0B4J2F2 783 aa6.27□□□□□ -1.41
RFC4-211ENST00000460408 PAX4O43316 350 aa6.27□□□□□ -1.41
RFC4-211ENST00000460408 FOXO3O43524 673 aa6.27□□□□□ -1.41
RFC4-211ENST00000460408 LGR5O75473 907 aa6.27□□□□□ -1.41
RFC4-211ENST00000460408 HOXD8P13378 290 aaPredicted RBP6.27□□□□□ -1.41
RFC4-211ENST00000460408 SSFA2P28290 1259 aa6.27□□□□□ -1.41
RFC4-211ENST00000460408 SSTR4P31391 388 aa6.27□□□□□ -1.41
RFC4-211ENST00000460408 SIK1P57059 783 aa6.27□□□□□ -1.41
RFC4-211ENST00000460408 OCLNQ16625 522 aa6.27□□□□□ -1.41
RFC4-211ENST00000460408 MAP4K3Q8IVH8 894 aa6.27□□□□□ -1.41
RFC4-211ENST00000460408 DCAF11Q8TEB1 546 aa6.27□□□□□ -1.41
RFC4-211ENST00000460408 FMNL2Q96PY5 1086 aa6.27□□□□□ -1.41
RFC4-211ENST00000460408 RTCBQ9Y3I0 505 aaKnown RBP6.27□□□□□ -1.41
RFC4-211ENST00000460408 WEE1P30291 646 aa6.26□□□□□ -1.41
RFC4-211ENST00000460408 SETDB1Q15047 1291 aa6.26□□□□□ -1.41
RFC4-211ENST00000460408 IL22RA1Q8N6P7 574 aa6.26□□□□□ -1.41
RFC4-211ENST00000460408 KIAA1324LA8MWY0 1029 aaPredicted RBP6.25□□□□□ -1.41
RFC4-211ENST00000460408 J3QW42 95 aa6.25□□□□□ -1.41
RFC4-211ENST00000460408 GSC2O15499 205 aa6.25□□□□□ -1.41
RFC4-211ENST00000460408 SOX18P35713 384 aa6.25□□□□□ -1.41
RFC4-211ENST00000460408 TXKP42681 527 aa6.25□□□□□ -1.41
RFC4-211ENST00000460408 KCNA1Q09470 495 aa6.25□□□□□ -1.41
RFC4-211ENST00000460408 AEBP1Q8IUX7 1158 aa6.25□□□□□ -1.41
RFC4-211ENST00000460408 RAXQ9Y2V3 346 aa6.25□□□□□ -1.41
RFC4-211ENST00000460408 MMP20O60882 483 aa6.24□□□□□ -1.41
RFC4-211ENST00000460408 XYLBO75191 536 aa6.24□□□□□ -1.41
RFC4-211ENST00000460408 GHRHP01286 108 aa6.24□□□□□ -1.41
RFC4-211ENST00000460408 IGLV1-40P01703 118 aa6.24□□□□□ -1.41
RFC4-211ENST00000460408 PSAPP07602 524 aa6.24□□□□□ -1.41
RFC4-211ENST00000460408 GDF6Q6KF10 455 aaPredicted RBP6.24□□□□□ -1.41
RFC4-211ENST00000460408 CACTIN-AS1Q8N1I8 211 aa6.24□□□□□ -1.41
RFC4-211ENST00000460408 USP20Q9Y2K6 914 aa6.24□□□□□ -1.41
RFC4-211ENST00000460408 PTCD1O75127 700 aaKnown RBP6.23□□□□□ -1.41
RFC4-211ENST00000460408 MED26O95402 600 aa6.23□□□□□ -1.41
RFC4-211ENST00000460408 ATP2B4P23634 1241 aa6.23□□□□□ -1.41
RFC4-211ENST00000460408 IRAK1P51617 712 aa6.23□□□□□ -1.41
RFC4-211ENST00000460408 B4GALNT3Q6L9W6 998 aa6.23□□□□□ -1.41
RFC4-211ENST00000460408 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.23□□□□□ -1.41
RFC4-211ENST00000460408 TXNDC2Q86VQ3 553 aa6.23□□□□□ -1.41
RFC4-211ENST00000460408 MUC3BQ9H195 1237 aa6.23□□□□□ -1.41
RFC4-211ENST00000460408 RBSNQ9H1K0 784 aa6.23□□□□□ -1.41
RFC4-211ENST00000460408 LRFN2Q9ULH4 789 aa6.23□□□□□ -1.41
RFC4-211ENST00000460408 KCNMB2Q9Y691 235 aa6.23□□□□□ -1.41
RFC4-211ENST00000460408 ZBTB7CA1YPR0 619 aa6.22□□□□□ -1.41
RFC4-211ENST00000460408 PATL2C9JE40 543 aaKnown RBP6.22□□□□□ -1.41
RFC4-211ENST00000460408 PRMT3O60678 531 aa6.22□□□□□ -1.41
RFC4-211ENST00000460408 COBLO75128 1261 aa6.22□□□□□ -1.41
RFC4-211ENST00000460408 GLB1P16278 677 aa6.22□□□□□ -1.41
RFC4-211ENST00000460408 TREML1Q86YW5 311 aa6.22□□□□□ -1.41
RFC4-211ENST00000460408 RGL4Q8IZJ4 473 aa6.22□□□□□ -1.41
RFC4-211ENST00000460408 CMTR1Q8N1G2 835 aaKnown RBP6.22□□□□□ -1.41
RFC4-211ENST00000460408 AGGF1Q8N302 714 aaeCLIP6.22□□□□□ -1.41
RFC4-211ENST00000460408 VTI1AQ96AJ9 217 aa6.22□□□□□ -1.41
RFC4-211ENST00000460408 NSUN5Q96P11 429 aaKnown RBP6.22□□□□□ -1.41
RFC4-211ENST00000460408 UBL7Q96S82 380 aaPredicted RBP6.22□□□□□ -1.41
RFC4-211ENST00000460408 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.22□□□□□ -1.41
RFC4-211ENST00000460408 CXXC1Q9P0U4 656 aaPredicted RBP6.22□□□□□ -1.41
RFC4-211ENST00000460408 TRIM33Q9UPN9 1127 aa6.22□□□□□ -1.41
RFC4-211ENST00000460408 GNEQ9Y223 722 aaKnown RBP6.22□□□□□ -1.41
RFC4-211ENST00000460408 TGFB1P01137 390 aa6.21□□□□□ -1.42
RFC4-211ENST00000460408 PRIMPOLQ96LW4 560 aa6.21□□□□□ -1.42
RFC4-211ENST00000460408 STOML1Q9UBI4 398 aa6.21□□□□□ -1.42
RFC4-211ENST00000460408 OAS3Q9Y6K5 1087 aaKnown RBP6.21□□□□□ -1.42
RFC4-211ENST00000460408 DHX15O43143 795 aaKnown RBP6.2□□□□□ -1.42
RFC4-211ENST00000460408 SCNN1AP37088 669 aa6.2□□□□□ -1.42
RFC4-211ENST00000460408 GP2P55259 537 aaKnown RBP6.2□□□□□ -1.42
RFC4-211ENST00000460408 ZDHHC13Q8IUH4 622 aa6.2□□□□□ -1.42
RFC4-211ENST00000460408 ARMC10Q8N2F6 343 aa6.2□□□□□ -1.42
RFC4-211ENST00000460408 GALNT11Q8NCW6 608 aa6.2□□□□□ -1.42
RFC4-211ENST00000460408 PPME1Q9Y570 386 aa6.2□□□□□ -1.42
RFC4-211ENST00000460408 YBX3P16989 372 aaKnown RBP eCLIP6.19□□□□□ -1.429e-8■■□□□ 13
RFC4-211ENST00000460408 TAL1P17542 331 aaPredicted RBP6.19□□□□□ -1.42
RFC4-211ENST00000460408 FKBP5Q13451 457 aaPredicted RBP6.19□□□□□ -1.42
RFC4-211ENST00000460408 UVSSAQ2YD98 709 aa6.19□□□□□ -1.42
RFC4-211ENST00000460408 NLRP13Q86W25 1043 aa6.19□□□□□ -1.42
RFC4-211ENST00000460408 CEP41Q9BYV8 373 aa6.19□□□□□ -1.42
RFC4-211ENST00000460408 PODXL2Q9NZ53 605 aa6.19□□□□□ -1.42
RFC4-211ENST00000460408 IVNS1ABPQ9Y6Y0 642 aa6.19□□□□□ -1.42
RFC4-211ENST00000460408 TM4SF5O14894 197 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 176.9 ms