RNA–Protein interactions for RNA: ENST00000450251.5

USP53-202, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP53, Length 6,072 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-202ENST00000450251 BRAPQ7Z569 592 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 SMC1BQ8NDV3 1235 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 USP6NLQ92738 828 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 MIS12Q9H081 205 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 TAOK3Q9H2K8 898 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 ZSCAN16Q9H4T2 348 aaPredicted RBP2.51□□□□□ -2.01
USP53-202ENST00000450251 TUBA8Q9NY65 449 aaPredicted RBP2.51□□□□□ -2.01
USP53-202ENST00000450251 CTNNA3Q9UI47 895 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 ABCA9Q8IUA7 1624 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 PCF11O94913 1555 aaKnown RBP2.51□□□□□ -2.01
USP53-202ENST00000450251 NDUFAB1O14561 156 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 SMIM24O75264 130 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 YEATS4O95619 227 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 RASSF2P50749 326 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 SAFBQ15424 915 aaKnown RBP eCLIP2.51□□□□□ -2.01
USP53-202ENST00000450251 IFI16Q16666 785 aaKnown RBP2.51□□□□□ -2.01
USP53-202ENST00000450251 TRIM58Q8NG06 486 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 SMARCC2Q8TAQ2 1214 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 CCDC12Q8WUD4 166 aaPredicted RBP2.51□□□□□ -2.01
USP53-202ENST00000450251 ITFG2Q969R8 447 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 SEC62Q99442 399 aaKnown RBP2.51□□□□□ -2.01
USP53-202ENST00000450251 IRAK4Q9NWZ3 460 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 HYPKQ9NX55 129 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 STIM2Q9P246 746 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 TTF2Q9UNY4 1162 aaKnown RBP2.51□□□□□ -2.01
USP53-202ENST00000450251 CAPN7Q9Y6W3 813 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 FER1L4A9Z1Z3 1794 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 PIK3C2GO75747 1445 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 ATXN2Q99700 1313 aaKnown RBP2.51□□□□□ -2.01
USP53-202ENST00000450251 CTIFO43310 598 aaKnown RBP2.51□□□□□ -2.01
USP53-202ENST00000450251 ZSCAN22P10073 491 aaPredicted RBP2.51□□□□□ -2.01
USP53-202ENST00000450251 TROVE2P10155 538 aaKnown RBP eCLIP2.51□□□□□ -2.01
USP53-202ENST00000450251 HOXA7P31268 230 aaPredicted RBP2.51□□□□□ -2.01
USP53-202ENST00000450251 PCK1P35558 622 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 GNAI1P63096 354 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 SEPT7Q16181 437 aaKnown RBP2.51□□□□□ -2.01
USP53-202ENST00000450251 WASHC4Q2M389 1173 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 CFAP58Q5T655 872 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 PDCD7Q8N8D1 485 aaKnown RBP2.51□□□□□ -2.01
USP53-202ENST00000450251 PCMTD1Q96MG8 357 aaPredicted RBP2.51□□□□□ -2.01
USP53-202ENST00000450251 OLFM3Q96PB7 478 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 CENPKQ9BS16 269 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 ADGBQ8N7X0 1667 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 EVC2Q86UK5 1308 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 MAFGO15525 162 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 EVI5O60447 810 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 PFDN1O60925 122 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 STAMBPO95630 424 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 ZNF75DP51815 510 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 HNRNPMP52272 730 aaKnown RBP eCLIP2.51□□□□□ -2.01
USP53-202ENST00000450251 SLC8A3P57103 927 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 MRPS25P82663 173 aaKnown RBP2.51□□□□□ -2.01
USP53-202ENST00000450251 NEUROD2Q15784 382 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 SWT1Q5T5J6 900 aaKnown RBP2.51□□□□□ -2.01
USP53-202ENST00000450251 KANK3Q6NY19 840 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 RUFY4Q6ZNE9 571 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 RNF10Q8N5U6 811 aaKnown RBP2.51□□□□□ -2.01
USP53-202ENST00000450251 MSL3Q8N5Y2 521 aaKnown RBP2.51□□□□□ -2.01
USP53-202ENST00000450251 CCDC155Q8N6L0 562 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 SMC6Q96SB8 1091 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 LARP6Q9BRS8 491 aaKnown RBP2.51□□□□□ -2.01
USP53-202ENST00000450251 NRDE2Q9H7Z3 1164 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 ZKSCAN7Q9P0L1 754 aaPredicted RBP2.51□□□□□ -2.01
USP53-202ENST00000450251 CTTNBP2NLQ9P2B4 639 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 CEP131Q9UPN4 1083 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 NPATQ14207 1427 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 BCORL1Q5H9F3 1711 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 NSD2O96028 1365 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 CCDC69A6NI79 296 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 EIF3CLB5ME19 914 aaKnown RBP2.51□□□□□ -2.01
USP53-202ENST00000450251 PPFIA2O75334 1257 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 ZNF165P49910 485 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 CHMP4BP1P59074 171 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 GNG11P61952 73 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 SPA17Q15506 151 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 CCDC96Q2M329 555 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 ACBD5Q5T8D3 534 aaPredicted RBP2.51□□□□□ -2.01
USP53-202ENST00000450251 TTC19Q6DKK2 380 aaPredicted RBP2.51□□□□□ -2.01
USP53-202ENST00000450251 NAA16Q6N069 864 aaPredicted RBP2.51□□□□□ -2.01
USP53-202ENST00000450251 HDGFL2Q7Z4V5 671 aaPredicted RBP2.51□□□□□ -2.01
USP53-202ENST00000450251 KLHL23Q8NBE8 558 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 MAML3Q96JK9 1138 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 EIF3CQ99613 913 aaKnown RBP2.51□□□□□ -2.01
USP53-202ENST00000450251 Q9H521 79 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 NOP53Q9NZM5 478 aaKnown RBP2.51□□□□□ -2.01
USP53-202ENST00000450251 TSKSQ9UJT2 592 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 TRAK1Q9UPV9 953 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 ZNF148Q9UQR1 794 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 CCDC61Q9Y6R9 512 aa2.51□□□□□ -2.01
USP53-202ENST00000450251 PARD3Q8TEW0 1356 aa2.5□□□□□ -2.01
USP53-202ENST00000450251 IL16Q14005 1332 aa2.5□□□□□ -2.01
USP53-202ENST00000450251 CCDC151A5D8V7 595 aa2.5□□□□□ -2.01
USP53-202ENST00000450251 KIF4AO95239 1232 aa2.5□□□□□ -2.01
USP53-202ENST00000450251 EIF2S1P05198 315 aaKnown RBP2.5□□□□□ -2.01
USP53-202ENST00000450251 XBP1P17861 261 aa2.5□□□□□ -2.01
USP53-202ENST00000450251 CUL3Q13618 768 aa2.5□□□□□ -2.01
USP53-202ENST00000450251 STK38Q15208 465 aa2.5□□□□□ -2.01
USP53-202ENST00000450251 LMOD2Q6P5Q4 547 aa2.5□□□□□ -2.01
USP53-202ENST00000450251 NOL8Q76FK4 1167 aaKnown RBP2.5□□□□□ -2.01
USP53-202ENST00000450251 CCDC80Q76M96 950 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms