RNA–Protein interactions for RNA: ENST00000434472.6

CD44-210, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-210ENST00000434472 XIRP1Q702N8 1843 aaKnown RBP12.34□□□□□ -0.43
CD44-210ENST00000434472 CYP21A2P08686 494 aa12.34□□□□□ -0.43
CD44-210ENST00000434472 IFIT1P09914 478 aaKnown RBP12.34□□□□□ -0.43
CD44-210ENST00000434472 HSP90B1P14625 803 aaKnown RBP12.34□□□□□ -0.43
CD44-210ENST00000434472 EVA1CP58658 441 aa12.34□□□□□ -0.43
CD44-210ENST00000434472 TCIRG1Q13488 830 aa12.34□□□□□ -0.43
CD44-210ENST00000434472 Q6ZUG5 572 aa12.34□□□□□ -0.43
CD44-210ENST00000434472 ZBTB3Q9H5J0 574 aa12.34□□□□□ -0.43
CD44-210ENST00000434472 TMOD3Q9NYL9 352 aa12.34□□□□□ -0.43
CD44-210ENST00000434472 SLAIN2Q9P270 581 aa12.34□□□□□ -0.43
CD44-210ENST00000434472 GOLIM4O00461 696 aa12.33□□□□□ -0.43
CD44-210ENST00000434472 RNF113AO15541 343 aaKnown RBP12.33□□□□□ -0.43
CD44-210ENST00000434472 CCDC57Q2TAC2 916 aa12.33□□□□□ -0.43
CD44-210ENST00000434472 CCDC158Q5M9N0 1113 aa12.33□□□□□ -0.43
CD44-210ENST00000434472 KIF6Q6ZMV9 814 aa12.33□□□□□ -0.43
CD44-210ENST00000434472 CDC37L1Q7L3B6 337 aa12.33□□□□□ -0.43
CD44-210ENST00000434472 DHX32Q7L7V1 743 aaKnown RBP12.33□□□□□ -0.43
CD44-210ENST00000434472 PLA2G12BQ9BX93 195 aa12.33□□□□□ -0.43
CD44-210ENST00000434472 ZSCAN16Q9H4T2 348 aaPredicted RBP12.33□□□□□ -0.43
CD44-210ENST00000434472 TAF6LQ9Y6J9 622 aa12.33□□□□□ -0.43
CD44-210ENST00000434472 ABCC12Q96J65 1359 aa12.33□□□□□ -0.44
CD44-210ENST00000434472 TCHHQ07283 1943 aa12.33□□□□□ -0.44
CD44-210ENST00000434472 GOLGA6L4A6NEF3 574 aa12.33□□□□□ -0.44
CD44-210ENST00000434472 PFKFB2O60825 505 aa12.33□□□□□ -0.44
CD44-210ENST00000434472 PCCAP05165 728 aaPredicted RBP12.33□□□□□ -0.44
CD44-210ENST00000434472 ZFYP08048 801 aaPredicted RBP12.33□□□□□ -0.44
CD44-210ENST00000434472 HMGN5P82970 282 aaKnown RBP12.33□□□□□ -0.44
CD44-210ENST00000434472 FGD1P98174 961 aa12.33□□□□□ -0.44
CD44-210ENST00000434472 CCDC129Q6ZRS4 1044 aa12.33□□□□□ -0.44
CD44-210ENST00000434472 TCEANC2Q96MN5 208 aa12.33□□□□□ -0.44
CD44-210ENST00000434472 FUCA2Q9BTY2 467 aa12.33□□□□□ -0.44
CD44-210ENST00000434472 A0A1B0GUL7 405 aa12.32□□□□□ -0.44
CD44-210ENST00000434472 CCDC192P0DO97 292 aa12.32□□□□□ -0.44
CD44-210ENST00000434472 TIMM10P62072 90 aa12.32□□□□□ -0.44
CD44-210ENST00000434472 STK3Q13188 491 aa12.32□□□□□ -0.44
CD44-210ENST00000434472 TTC6Q86TZ1 520 aa12.32□□□□□ -0.44
CD44-210ENST00000434472 SMARCC2Q8TAQ2 1214 aa12.32□□□□□ -0.44
CD44-210ENST00000434472 SPATA32Q96LK8 384 aa12.32□□□□□ -0.44
CD44-210ENST00000434472 SEC62Q99442 399 aaKnown RBP12.32□□□□□ -0.44
CD44-210ENST00000434472 DDX19AQ9NUU7 478 aaKnown RBP12.32□□□□□ -0.44
CD44-210ENST00000434472 CTNNA3Q9UI47 895 aa12.32□□□□□ -0.44
CD44-210ENST00000434472 ABCA3Q99758 1704 aa12.31□□□□□ -0.44
CD44-210ENST00000434472 H3BQV1 296 aa12.31□□□□□ -0.44
CD44-210ENST00000434472 KDM4AO75164 1064 aa12.31□□□□□ -0.44
CD44-210ENST00000434472 STARD3NLO95772 234 aa12.31□□□□□ -0.44
CD44-210ENST00000434472 TPM3P06753 285 aa12.31□□□□□ -0.44
CD44-210ENST00000434472 EXOSC10Q01780 885 aaKnown RBP12.31□□□□□ -0.44
CD44-210ENST00000434472 LRRC24Q50LG9 513 aa12.31□□□□□ -0.44
CD44-210ENST00000434472 HSP90AB3PQ58FF7 597 aa12.31□□□□□ -0.44
CD44-210ENST00000434472 TTC39AQ5SRH9 613 aa12.31□□□□□ -0.44
CD44-210ENST00000434472 GORABQ5T7V8 394 aa12.31□□□□□ -0.44
CD44-210ENST00000434472 IFFO2Q5TF58 517 aa12.31□□□□□ -0.44
CD44-210ENST00000434472 NAA16Q6N069 864 aaPredicted RBP12.31□□□□□ -0.44
CD44-210ENST00000434472 NUP62CLQ9H1M0 184 aa12.31□□□□□ -0.44
CD44-210ENST00000434472 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.31□□□□□ -0.44
CD44-210ENST00000434472 CFAP45Q9UL16 551 aa12.31□□□□□ -0.44
CD44-210ENST00000434472 NDUFB9Q9Y6M9 179 aa12.31□□□□□ -0.44
CD44-210ENST00000434472 SHANK3Q9BYB0 1731 aa12.31□□□□□ -0.44
CD44-210ENST00000434472 HCLS1P14317 486 aaPredicted RBP12.3□□□□□ -0.44
CD44-210ENST00000434472 HSPA2P54652 639 aa12.3□□□□□ -0.44
CD44-210ENST00000434472 MAP3K11Q16584 847 aa12.3□□□□□ -0.44
CD44-210ENST00000434472 TAF7LQ5H9L4 462 aa12.3□□□□□ -0.44
CD44-210ENST00000434472 ATL3Q6DD88 541 aa12.3□□□□□ -0.44
CD44-210ENST00000434472 BRF1Q92994 677 aa12.3□□□□□ -0.44
CD44-210ENST00000434472 AGXT2Q9BYV1 514 aa12.3□□□□□ -0.44
CD44-210ENST00000434472 STRN4Q9NRL3 753 aa12.3□□□□□ -0.44
CD44-210ENST00000434472 CDHR2Q9BYE9 1310 aa12.3□□□□□ -0.44
CD44-210ENST00000434472 CSF1RP07333 972 aa12.29□□□□□ -0.44
CD44-210ENST00000434472 RESTQ13127 1097 aa12.29□□□□□ -0.44
CD44-210ENST00000434472 GIMAP6Q6P9H5 292 aa12.29□□□□□ -0.44
CD44-210ENST00000434472 FERMT3Q86UX7 667 aa12.29□□□□□ -0.44
CD44-210ENST00000434472 FBXL16Q8N461 479 aa12.29□□□□□ -0.44
CD44-210ENST00000434472 ZBTB38Q8NAP3 1195 aaPredicted RBP12.29□□□□□ -0.44
CD44-210ENST00000434472 LEO1Q8WVC0 666 aaPredicted RBP12.29□□□□□ -0.44
CD44-210ENST00000434472 ZNF274Q96GC6 653 aaPredicted RBP12.29□□□□□ -0.44
CD44-210ENST00000434472 ZNF594Q96JF6 807 aaPredicted RBP12.29□□□□□ -0.44
CD44-210ENST00000434472 MAST3O60307 1309 aa12.29□□□□□ -0.44
CD44-210ENST00000434472 E7EWF7 191 aa12.29□□□□□ -0.44
CD44-210ENST00000434472 ADCY5O95622 1261 aa12.29□□□□□ -0.44
CD44-210ENST00000434472 HSPD1P10809 573 aaKnown RBP12.29□□□□□ -0.44
CD44-210ENST00000434472 IFIT5Q13325 482 aaKnown RBP12.29□□□□□ -0.44
CD44-210ENST00000434472 COL9A3Q14050 684 aaPredicted RBP12.29□□□□□ -0.44
CD44-210ENST00000434472 STOX1Q6ZVD7 989 aa12.29□□□□□ -0.44
CD44-210ENST00000434472 USP25Q9UHP3 1055 aa12.29□□□□□ -0.44
CD44-210ENST00000434472 CCDC9Q9Y3X0 531 aaKnown RBP12.29□□□□□ -0.44
CD44-210ENST00000434472 MAP3K15Q6ZN16 1313 aa12.28□□□□□ -0.44
CD44-210ENST00000434472 JAK2O60674 1132 aa12.28□□□□□ -0.44
CD44-210ENST00000434472 KIAA2012Q0VF49 1180 aa12.28□□□□□ -0.44
CD44-210ENST00000434472 SCRN1Q12765 414 aa12.28□□□□□ -0.44
CD44-210ENST00000434472 ZSCAN25Q6NSZ9 544 aa12.28□□□□□ -0.44
CD44-210ENST00000434472 GIGYF2Q6Y7W6 1299 aaKnown RBP12.28□□□□□ -0.44
CD44-210ENST00000434472 PUS3Q9BZE2 481 aaKnown RBP12.28□□□□□ -0.44
CD44-210ENST00000434472 CLSTN2Q9H4D0 955 aa12.28□□□□□ -0.44
CD44-210ENST00000434472 CAVIN2O95810 425 aa12.27□□□□□ -0.44
CD44-210ENST00000434472 IMMTQ16891 758 aaKnown RBP12.27□□□□□ -0.44
CD44-210ENST00000434472 TPRNQ4KMQ1 711 aa12.27□□□□□ -0.44
CD44-210ENST00000434472 DNAJC10Q8IXB1 793 aa12.27□□□□□ -0.44
CD44-210ENST00000434472 NSUN7Q8NE18 718 aaKnown RBP12.27□□□□□ -0.44
CD44-210ENST00000434472 FAM200AQ8TCP9 573 aa12.27□□□□□ -0.44
CD44-210ENST00000434472 XAGE2Q96GT9 111 aa12.27□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms