RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 AHCTF1Q8WYP5 2266 aa3.39□□□□□ -1.87
CCDC88A-205ENST00000426576 C9orf84Q5VXU9 1444 aa3.39□□□□□ -1.87
CCDC88A-205ENST00000426576 PRR5-ARHGAP8B1AHC4 643 aa3.39□□□□□ -1.87
CCDC88A-205ENST00000426576 SP100P23497 879 aaPredicted RBP3.39□□□□□ -1.87
CCDC88A-205ENST00000426576 IGHMBP2P38935 993 aaKnown RBP3.39□□□□□ -1.87
CCDC88A-205ENST00000426576 ARHGAP8P85298 464 aa3.39□□□□□ -1.87
CCDC88A-205ENST00000426576 RASSF7Q02833 373 aa3.39□□□□□ -1.87
CCDC88A-205ENST00000426576 PUS10Q3MIT2 529 aaKnown RBP3.39□□□□□ -1.87
CCDC88A-205ENST00000426576 ATXN2LQ8WWM7 1075 aaKnown RBP3.39□□□□□ -1.87
CCDC88A-205ENST00000426576 PNMA5Q96PV4 448 aa3.39□□□□□ -1.87
CCDC88A-205ENST00000426576 CDK19Q9BWU1 502 aa3.39□□□□□ -1.87
CCDC88A-205ENST00000426576 TPX2Q9ULW0 747 aaKnown RBP3.39□□□□□ -1.87
CCDC88A-205ENST00000426576 CPS1P31327 1500 aa3.39□□□□□ -1.87
CCDC88A-205ENST00000426576 CYP2B6P20813 491 aa3.39□□□□□ -1.87
CCDC88A-205ENST00000426576 SPECC1Q5M775 1068 aa3.39□□□□□ -1.87
CCDC88A-205ENST00000426576 HERVK_113Q902F9 699 aa3.39□□□□□ -1.87
CCDC88A-205ENST00000426576 C11orf49Q9H6J7 331 aa3.39□□□□□ -1.87
CCDC88A-205ENST00000426576 BSDC1Q9NW68 430 aaPredicted RBP3.39□□□□□ -1.87
CCDC88A-205ENST00000426576 PTPRQQ9UMZ3 2332 aa3.39□□□□□ -1.87
CCDC88A-205ENST00000426576 ANO9A1A5B4 782 aa3.39□□□□□ -1.87
CCDC88A-205ENST00000426576 SOBPA7XYQ1 873 aa3.39□□□□□ -1.87
CCDC88A-205ENST00000426576 SERPINB2P05120 415 aa3.39□□□□□ -1.87
CCDC88A-205ENST00000426576 CETPP11597 493 aa3.39□□□□□ -1.87
CCDC88A-205ENST00000426576 CHRNA5P30532 468 aa3.39□□□□□ -1.87
CCDC88A-205ENST00000426576 ELF2Q15723 593 aa3.39□□□□□ -1.87
CCDC88A-205ENST00000426576 IRAK1BP1Q5VVH5 260 aa3.39□□□□□ -1.87
CCDC88A-205ENST00000426576 ADAT2Q7Z6V5 191 aaKnown RBP3.39□□□□□ -1.87
CCDC88A-205ENST00000426576 SLF2Q8IX21 1173 aa3.39□□□□□ -1.87
CCDC88A-205ENST00000426576 SHDQ96IW2 340 aa3.39□□□□□ -1.87
CCDC88A-205ENST00000426576 RSPH6AQ9H0K4 717 aa3.39□□□□□ -1.87
CCDC88A-205ENST00000426576 FAM86C1Q9NVL1 165 aa3.39□□□□□ -1.87
CCDC88A-205ENST00000426576 KIF16BQ96L93 1317 aa3.39□□□□□ -1.87
CCDC88A-205ENST00000426576 ZC3H4Q9UPT8 1303 aaKnown RBP3.39□□□□□ -1.87
CCDC88A-205ENST00000426576 EN2P19622 333 aaPredicted RBP3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 TMEM67Q5HYA8 995 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 DDX42Q86XP3 938 aaKnown RBP eCLIP3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 ADSSL1Q8N142 457 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 JMYQ8N9B5 988 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 ZNF296Q8WUU4 475 aaPredicted RBP3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 PAWRQ96IZ0 340 aaKnown RBP3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 YME1L1Q96TA2 773 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 KRT19P08727 400 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 ZSCAN20P17040 1043 aaPredicted RBP3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 KCNQ4P56696 695 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 ATL3Q6DD88 541 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 APOBEC3FQ8IUX4 373 aaKnown RBP3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 CCDC117Q8IWD4 279 aaPredicted RBP3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 TMEFF1Q8IYR6 380 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 SLAIN1Q8ND83 568 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 OTUD5Q96G74 571 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 BCO2Q9BYV7 579 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 PRDM12Q9H4Q4 367 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 TAF1DQ9H5J8 278 aaPredicted RBP3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 IL1RAPL2Q9NP60 686 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 CNOT7Q9UIV1 285 aaKnown RBP3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 ATP10AO60312 1499 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 ZFHX2Q9C0A1 2572 aaPredicted RBP3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 KIF3CO14782 793 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 OPLAHO14841 1288 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 MSCO60682 206 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 CAPN2P17655 700 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 CBX1P83916 185 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 C4orf17Q53FE4 359 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 TMC4Q7Z404 712 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 SLC44A5Q8NCS7 719 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 RUBCNQ92622 972 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 APBB2Q92870 758 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 GPKOWQ92917 476 aaPredicted RBP eCLIP3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 FAM193BQ96PV7 902 aaPredicted RBP3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 NUDT12Q9BQG2 462 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 CERS4Q9HA82 394 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 ZHX1Q9UKY1 873 aaPredicted RBP3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 NIP7Q9Y221 180 aaKnown RBP eCLIP3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 LEMD3Q9Y2U8 911 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 OVOS2A0A0G2JMS6 1433 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 OVOS2A0A0J9YW53 1432 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 OVOS2Q6IE36 1432 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 ARHGAP5Q13017 1502 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 NUP160Q12769 1436 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 SPDYE2BA6NHP3 402 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 GOLGA8CPA6NN73 597 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 P4HBP07237 508 aaKnown RBP3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 SPDYE6P0CI01 402 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 IARSP41252 1262 aaKnown RBP3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 SPDYE2Q495Y8 402 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 NUDT18Q6ZVK8 323 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 NUP133Q8WUM0 1156 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 TNPO1Q92973 898 aaKnown RBP3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 PPP1R12CQ9BZL4 782 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 AS3MTQ9HBK9 375 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 AAASQ9NRG9 546 aa3.38□□□□□ -1.87
CCDC88A-205ENST00000426576 A0A1W2PPC1 479 aa3.37□□□□□ -1.87
CCDC88A-205ENST00000426576 SLC28A2O43868 658 aa3.37□□□□□ -1.87
CCDC88A-205ENST00000426576 AGFG2O95081 481 aa3.37□□□□□ -1.87
CCDC88A-205ENST00000426576 GTF2A2P52657 109 aa3.37□□□□□ -1.87
CCDC88A-205ENST00000426576 SNAPC2Q13487 334 aa3.37□□□□□ -1.87
CCDC88A-205ENST00000426576 KIF4BQ2VIQ3 1234 aa3.37□□□□□ -1.87
CCDC88A-205ENST00000426576 FOXR1Q6PIV2 292 aa3.37□□□□□ -1.87
CCDC88A-205ENST00000426576 RGL4Q8IZJ4 473 aa3.37□□□□□ -1.87
CCDC88A-205ENST00000426576 PRR7Q8TB68 274 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms