RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 SMC5Q8IY18 1101 aa8.78□□□□□ -1
LIMA1-202ENST00000394943 FTSJ3Q8IY81 847 aaKnown RBP8.78□□□□□ -1
LIMA1-202ENST00000394943 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.78□□□□□ -1
LIMA1-202ENST00000394943 RAB11FIP3O75154 756 aa8.78□□□□□ -1
LIMA1-202ENST00000394943 TMED8Q6PL24 325 aaPredicted RBP8.78□□□□□ -1
LIMA1-202ENST00000394943 LMBR1LQ6UX01 489 aa8.78□□□□□ -1
LIMA1-202ENST00000394943 CELF1Q92879 486 aaKnown RBP8.78□□□□□ -1
LIMA1-202ENST00000394943 ANKRD2Q9GZV1 360 aa8.78□□□□□ -1
LIMA1-202ENST00000394943 MINPP1Q9UNW1 487 aa8.78□□□□□ -1
LIMA1-202ENST00000394943 ANKRD18BA2A2Z9 1011 aa8.78□□□□□ -1
LIMA1-202ENST00000394943 PLIN1O60240 522 aa8.78□□□□□ -1
LIMA1-202ENST00000394943 PNMA6EA0A0J9YXQ4 647 aa8.77□□□□□ -1
LIMA1-202ENST00000394943 EYA2O00167 538 aa8.77□□□□□ -1
LIMA1-202ENST00000394943 NFKBIEO00221 500 aa8.77□□□□□ -1
LIMA1-202ENST00000394943 YBX3P16989 372 aaKnown RBP eCLIP8.77□□□□□ -1
LIMA1-202ENST00000394943 PRELPP51888 382 aa8.77□□□□□ -1
LIMA1-202ENST00000394943 FAM161AQ3B820 660 aa8.77□□□□□ -1
LIMA1-202ENST00000394943 DALRD3Q5D0E6 543 aaKnown RBP8.77□□□□□ -1
LIMA1-202ENST00000394943 CRBNQ96SW2 442 aa8.77□□□□□ -1
LIMA1-202ENST00000394943 IL15P40933 162 aaPredicted RBP8.77□□□□□ -1.01
LIMA1-202ENST00000394943 UBE4AQ14139 1066 aa8.77□□□□□ -1.01
LIMA1-202ENST00000394943 DDX46Q7L014 1031 aaKnown RBP8.77□□□□□ -1.01
LIMA1-202ENST00000394943 FRAT1Q92837 279 aaPredicted RBP8.77□□□□□ -1.01
LIMA1-202ENST00000394943 XDHP47989 1333 aa8.77□□□□□ -1.01
LIMA1-202ENST00000394943 CDK5RAP2Q96SN8 1893 aa8.77□□□□□ -1.01
LIMA1-202ENST00000394943 ATP2B4P23634 1241 aa8.77□□□□□ -1.01
LIMA1-202ENST00000394943 CHRNA5P30532 468 aa8.77□□□□□ -1.01
LIMA1-202ENST00000394943 BICDL1Q6ZP65 573 aa8.77□□□□□ -1.01
LIMA1-202ENST00000394943 SUPT20HQ8NEM7 779 aa8.77□□□□□ -1.01
LIMA1-202ENST00000394943 COG6Q9Y2V7 657 aa8.77□□□□□ -1.01
LIMA1-202ENST00000394943 PCDHB15Q9Y5E8 787 aa8.77□□□□□ -1.01
LIMA1-202ENST00000394943 SALL1Q9NSC2 1324 aa8.77□□□□□ -1.01
LIMA1-202ENST00000394943 IL1R1P14778 569 aa8.76□□□□□ -1.01
LIMA1-202ENST00000394943 CCDC93Q567U6 631 aa8.76□□□□□ -1.01
LIMA1-202ENST00000394943 SLC4A10Q6U841 1118 aa8.76□□□□□ -1.01
LIMA1-202ENST00000394943 SEC31BQ9NQW1 1179 aa8.76□□□□□ -1.01
LIMA1-202ENST00000394943 IFIT5Q13325 482 aaKnown RBP8.76□□□□□ -1.01
LIMA1-202ENST00000394943 ANKRD18AQ8IVF6 992 aa8.76□□□□□ -1.01
LIMA1-202ENST00000394943 ITPRIPQ8IWB1 547 aa8.76□□□□□ -1.01
LIMA1-202ENST00000394943 RPGRQ92834 1020 aaKnown RBP8.76□□□□□ -1.01
LIMA1-202ENST00000394943 SUPT16HQ9Y5B9 1047 aaKnown RBP8.76□□□□□ -1.01
LIMA1-202ENST00000394943 AOX1Q06278 1338 aa8.76□□□□□ -1.01
LIMA1-202ENST00000394943 A0A0G2JLW4 131 aa8.76□□□□□ -1.01
LIMA1-202ENST00000394943 MSH5O43196 834 aa8.76□□□□□ -1.01
LIMA1-202ENST00000394943 GRIN3BO60391 1043 aa8.76□□□□□ -1.01
LIMA1-202ENST00000394943 ZNF330Q9Y3S2 320 aaPredicted RBP8.76□□□□□ -1.01
LIMA1-202ENST00000394943 FZD9O00144 591 aa8.75□□□□□ -1.01
LIMA1-202ENST00000394943 SASH1O94885 1247 aa8.75□□□□□ -1.01
LIMA1-202ENST00000394943 KIAA2012Q0VF49 1180 aa8.75□□□□□ -1.01
LIMA1-202ENST00000394943 FBXO33Q7Z6M2 555 aa8.75□□□□□ -1.01
LIMA1-202ENST00000394943 COL1A1P02452 1464 aaPredicted RBP8.75□□□□□ -1.01
LIMA1-202ENST00000394943 FAM205AQ6ZU69 1335 aa8.75□□□□□ -1.01
LIMA1-202ENST00000394943 GPSM2P81274 684 aa8.75□□□□□ -1.01
LIMA1-202ENST00000394943 HSP90AB4PQ58FF6 505 aa8.75□□□□□ -1.01
LIMA1-202ENST00000394943 GCC1Q96CN9 775 aa8.75□□□□□ -1.01
LIMA1-202ENST00000394943 YTHDC1Q96MU7 727 aaKnown RBP8.75□□□□□ -1.01
LIMA1-202ENST00000394943 PDE8BO95263 885 aa8.75□□□□□ -1.01
LIMA1-202ENST00000394943 CENPBP07199 599 aaPredicted RBP8.75□□□□□ -1.01
LIMA1-202ENST00000394943 ERC1Q8IUD2 1116 aa8.75□□□□□ -1.01
LIMA1-202ENST00000394943 SEMA3EO15041 775 aa8.74□□□□□ -1.01
LIMA1-202ENST00000394943 TBC1D16Q8TBP0 767 aa8.74□□□□□ -1.01
LIMA1-202ENST00000394943 OSBPL3Q9H4L5 887 aa8.74□□□□□ -1.01
LIMA1-202ENST00000394943 RFX7Q2KHR2 1363 aa8.74□□□□□ -1.01
LIMA1-202ENST00000394943 ARID4AP29374 1257 aaPredicted RBP8.74□□□□□ -1.01
LIMA1-202ENST00000394943 CCDC57Q2TAC2 916 aa8.74□□□□□ -1.01
LIMA1-202ENST00000394943 MRIQ9BWK5 157 aa8.74□□□□□ -1.01
LIMA1-202ENST00000394943 CHRNDQ07001 517 aa8.74□□□□□ -1.01
LIMA1-202ENST00000394943 STAP2Q9UGK3 403 aa8.74□□□□□ -1.01
LIMA1-202ENST00000394943 POLLQ9UGP5 575 aa8.74□□□□□ -1.01
LIMA1-202ENST00000394943 HMMRO75330 724 aa8.73□□□□□ -1.01
LIMA1-202ENST00000394943 IGHMBP2P38935 993 aaKnown RBP8.73□□□□□ -1.01
LIMA1-202ENST00000394943 COL2A1P02458 1487 aaPredicted RBP8.73□□□□□ -1.01
LIMA1-202ENST00000394943 L3MBTL3Q96JM7 780 aaPredicted RBP8.73□□□□□ -1.01
LIMA1-202ENST00000394943 EXOC6Q8TAG9 804 aa8.73□□□□□ -1.01
LIMA1-202ENST00000394943 PUM3Q15397 648 aaKnown RBP8.72□□□□□ -1.01
LIMA1-202ENST00000394943 LRRC24Q50LG9 513 aa8.72□□□□□ -1.01
LIMA1-202ENST00000394943 TDRD7Q8NHU6 1098 aaKnown RBP8.72□□□□□ -1.01
LIMA1-202ENST00000394943 LPIN2Q92539 896 aa8.72□□□□□ -1.01
LIMA1-202ENST00000394943 SUGT1Q9Y2Z0 365 aa8.72□□□□□ -1.01
LIMA1-202ENST00000394943 MYO5AQ9Y4I1 1855 aaKnown RBP8.72□□□□□ -1.01
LIMA1-202ENST00000394943 SRGAP3O43295 1099 aa8.72□□□□□ -1.01
LIMA1-202ENST00000394943 GMLQ99445 158 aa8.72□□□□□ -1.01
LIMA1-202ENST00000394943 PUS3Q9BZE2 481 aaKnown RBP8.72□□□□□ -1.01
LIMA1-202ENST00000394943 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.72□□□□□ -1.01
LIMA1-202ENST00000394943 THSD7BQ9C0I4 1608 aa8.72□□□□□ -1.01
LIMA1-202ENST00000394943 LAMA4Q16363 1823 aa8.72□□□□□ -1.01
LIMA1-202ENST00000394943 NUCB1Q02818 461 aa8.72□□□□□ -1.01
LIMA1-202ENST00000394943 COA1Q9GZY4 146 aa8.72□□□□□ -1.01
LIMA1-202ENST00000394943 ZBED3Q96IU2 234 aaPredicted RBP8.71□□□□□ -1.01
LIMA1-202ENST00000394943 AKAP2Q9Y2D5 859 aa8.71□□□□□ -1.01
LIMA1-202ENST00000394943 AK9Q5TCS8 1911 aa8.71□□□□□ -1.01
LIMA1-202ENST00000394943 LMNB1P20700 586 aa8.71□□□□□ -1.02
LIMA1-202ENST00000394943 MPNDQ8N594 471 aa8.71□□□□□ -1.02
LIMA1-202ENST00000394943 MTMR14Q8NCE2 650 aa8.71□□□□□ -1.02
LIMA1-202ENST00000394943 JARID2Q92833 1246 aaPredicted RBP8.71□□□□□ -1.02
LIMA1-202ENST00000394943 KIF1BPQ96EK5 621 aa8.71□□□□□ -1.02
LIMA1-202ENST00000394943 EYA3Q99504 573 aa8.71□□□□□ -1.02
LIMA1-202ENST00000394943 GTF2E1P29083 439 aaPredicted RBP8.7□□□□□ -1.02
LIMA1-202ENST00000394943 IARSP41252 1262 aaKnown RBP8.7□□□□□ -1.02
LIMA1-202ENST00000394943 VIL1P09327 827 aaKnown RBP8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms