RNA–Protein interactions for RNA: ENST00000394597.6

RFFL-202, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFFL, Length 4,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-202ENST00000394597 TFCP2Q12800 502 aa6.64□□□□□ -1.35
RFFL-202ENST00000394597 TTLL7Q6ZT98 887 aa6.64□□□□□ -1.35
RFFL-202ENST00000394597 UNC5CLQ8IV45 518 aa6.64□□□□□ -1.35
RFFL-202ENST00000394597 PIBF1Q8WXW3 757 aa6.64□□□□□ -1.35
RFFL-202ENST00000394597 ZSCAN31Q96LW9 406 aaPredicted RBP6.64□□□□□ -1.35
RFFL-202ENST00000394597 ESYT1Q9BSJ8 1104 aa6.64□□□□□ -1.35
RFFL-202ENST00000394597 NYXQ9GZU5 481 aa6.64□□□□□ -1.35
RFFL-202ENST00000394597 RAI14Q9P0K7 980 aa6.64□□□□□ -1.35
RFFL-202ENST00000394597 COL3A1P02461 1466 aaPredicted RBP6.64□□□□□ -1.35
RFFL-202ENST00000394597 VPS37CA5D8V6 355 aaPredicted RBP6.64□□□□□ -1.35
RFFL-202ENST00000394597 USP8P40818 1118 aa6.64□□□□□ -1.35
RFFL-202ENST00000394597 ZNF445P59923 1031 aa6.64□□□□□ -1.35
RFFL-202ENST00000394597 MAP3K12Q12852 859 aa6.64□□□□□ -1.35
RFFL-202ENST00000394597 TTF1Q15361 905 aaPredicted RBP6.64□□□□□ -1.35
RFFL-202ENST00000394597 SF3A1Q15459 793 aaKnown RBP6.64□□□□□ -1.35
RFFL-202ENST00000394597 ATP2B3Q16720 1220 aa6.64□□□□□ -1.35
RFFL-202ENST00000394597 TPTE2Q6XPS3 522 aa6.64□□□□□ -1.35
RFFL-202ENST00000394597 OTUD7AQ8TE49 926 aaPredicted RBP6.64□□□□□ -1.35
RFFL-202ENST00000394597 UBXN4Q92575 508 aa6.64□□□□□ -1.35
RFFL-202ENST00000394597 CCNL1Q9UK58 526 aaPredicted RBP6.64□□□□□ -1.35
RFFL-202ENST00000394597 HEG1Q9ULI3 1381 aa6.64□□□□□ -1.35
RFFL-202ENST00000394597 UQCRFS1P1P0C7P4 283 aa6.64□□□□□ -1.35
RFFL-202ENST00000394597 TRIM29Q14134 588 aa6.64□□□□□ -1.35
RFFL-202ENST00000394597 SART3Q15020 963 aaKnown RBP6.64□□□□□ -1.35
RFFL-202ENST00000394597 ANKRD18AQ8IVF6 992 aa6.64□□□□□ -1.35
RFFL-202ENST00000394597 TXLNBQ8N3L3 684 aa6.64□□□□□ -1.35
RFFL-202ENST00000394597 PIGBQ92521 554 aa6.64□□□□□ -1.35
RFFL-202ENST00000394597 RPGRQ92834 1020 aaKnown RBP6.64□□□□□ -1.35
RFFL-202ENST00000394597 SNX21Q969T3 373 aa6.64□□□□□ -1.35
RFFL-202ENST00000394597 AIDAQ96BJ3 306 aa6.64□□□□□ -1.35
RFFL-202ENST00000394597 ABCF2Q9UG63 623 aa6.64□□□□□ -1.35
RFFL-202ENST00000394597 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.64□□□□□ -1.35
RFFL-202ENST00000394597 U3KPZ7 1027 aaPredicted RBP6.64□□□□□ -1.35
RFFL-202ENST00000394597 V9GYY5 206 aaPredicted RBP6.64□□□□□ -1.35
RFFL-202ENST00000394597 EYA2O00167 538 aa6.63□□□□□ -1.35
RFFL-202ENST00000394597 SLC3A2P08195 630 aaKnown RBP6.63□□□□□ -1.35
RFFL-202ENST00000394597 HCLS1P14317 486 aaPredicted RBP6.63□□□□□ -1.35
RFFL-202ENST00000394597 CASTP20810 708 aaKnown RBP6.63□□□□□ -1.35
RFFL-202ENST00000394597 PDCP20941 246 aa6.63□□□□□ -1.35
RFFL-202ENST00000394597 BICD2Q8TD16 824 aa6.63□□□□□ -1.35
RFFL-202ENST00000394597 SNRKQ9NRH2 765 aa6.63□□□□□ -1.35
RFFL-202ENST00000394597 PDE8AO60658 829 aa6.63□□□□□ -1.35
RFFL-202ENST00000394597 IMMTQ16891 758 aaKnown RBP6.63□□□□□ -1.35
RFFL-202ENST00000394597 UVSSAQ2YD98 709 aa6.63□□□□□ -1.35
RFFL-202ENST00000394597 TRAPPC3LQ5T215 181 aa6.63□□□□□ -1.35
RFFL-202ENST00000394597 KIF18AQ8NI77 898 aa6.63□□□□□ -1.35
RFFL-202ENST00000394597 ANKIB1Q9P2G1 1089 aa6.63□□□□□ -1.35
RFFL-202ENST00000394597 PAXBP1Q9Y5B6 917 aa6.63□□□□□ -1.35
RFFL-202ENST00000394597 SH3TC1Q8TE82 1336 aa6.63□□□□□ -1.35
RFFL-202ENST00000394597 GNPATO15228 680 aa6.63□□□□□ -1.35
RFFL-202ENST00000394597 DHX16O60231 1041 aaKnown RBP6.63□□□□□ -1.35
RFFL-202ENST00000394597 AXDND1Q5T1B0 1012 aaPredicted RBP6.63□□□□□ -1.35
RFFL-202ENST00000394597 UPF3BQ9BZI7 483 aaKnown RBP6.63□□□□□ -1.35
RFFL-202ENST00000394597 TRPC5Q9UL62 973 aaPredicted RBP6.63□□□□□ -1.35
RFFL-202ENST00000394597 AOX1Q06278 1338 aa6.63□□□□□ -1.35
RFFL-202ENST00000394597 SSH2Q76I76 1423 aa6.63□□□□□ -1.35
RFFL-202ENST00000394597 CHMLP26374 656 aa6.62□□□□□ -1.35
RFFL-202ENST00000394597 ZNF397Q8NF99 534 aaPredicted RBP6.62□□□□□ -1.35
RFFL-202ENST00000394597 GIMAP7Q8NHV1 300 aa6.62□□□□□ -1.35
RFFL-202ENST00000394597 KLHDC4Q8TBB5 520 aa6.62□□□□□ -1.35
RFFL-202ENST00000394597 ZBTB9Q96C00 473 aa6.62□□□□□ -1.35
RFFL-202ENST00000394597 SIPA1L2Q9P2F8 1722 aaPredicted RBP6.62□□□□□ -1.35
RFFL-202ENST00000394597 LOC102724428A0A0B4J2F2 783 aa6.62□□□□□ -1.35
RFFL-202ENST00000394597 SIK1P57059 783 aa6.62□□□□□ -1.35
RFFL-202ENST00000394597 RRP12Q5JTH9 1297 aaKnown RBP6.62□□□□□ -1.35
RFFL-202ENST00000394597 BANK1Q8NDB2 785 aa6.62□□□□□ -1.35
RFFL-202ENST00000394597 ACBD3Q9H3P7 528 aa6.62□□□□□ -1.35
RFFL-202ENST00000394597 GDPD2Q9HCC8 539 aa6.62□□□□□ -1.35
RFFL-202ENST00000394597 ZFYP08048 801 aaPredicted RBP6.62□□□□□ -1.35
RFFL-202ENST00000394597 TDO2P48775 406 aa6.62□□□□□ -1.35
RFFL-202ENST00000394597 LMAN1P49257 510 aa6.62□□□□□ -1.35
RFFL-202ENST00000394597 ST5P78524 1137 aa6.62□□□□□ -1.35
RFFL-202ENST00000394597 CCDC183Q5T5S1 534 aa6.62□□□□□ -1.35
RFFL-202ENST00000394597 FILIP1Q7Z7B0 1213 aa6.62□□□□□ -1.35
RFFL-202ENST00000394597 SIRT2Q8IXJ6 389 aa6.62□□□□□ -1.35
RFFL-202ENST00000394597 NOC3LQ8WTT2 800 aaKnown RBP6.62□□□□□ -1.35
RFFL-202ENST00000394597 WDR33Q9C0J8 1336 aaKnown RBP6.62□□□□□ -1.35
RFFL-202ENST00000394597 NRKQ7Z2Y5 1582 aa6.62□□□□□ -1.35
RFFL-202ENST00000394597 IL6STP40189 918 aaPredicted RBP6.61□□□□□ -1.35
RFFL-202ENST00000394597 IRX5P78411 483 aaPredicted RBP6.61□□□□□ -1.35
RFFL-202ENST00000394597 TNNI3KQ59H18 835 aa6.61□□□□□ -1.35
RFFL-202ENST00000394597 FPGT-TNNI3KV9GXZ4 949 aa6.61□□□□□ -1.35
RFFL-202ENST00000394597 ADGRB2O60241 1585 aa6.61□□□□□ -1.35
RFFL-202ENST00000394597 CPDO75976 1380 aa6.61□□□□□ -1.35
RFFL-202ENST00000394597 MAP3K15Q6ZN16 1313 aa6.61□□□□□ -1.35
RFFL-202ENST00000394597 ITGA6P23229 1130 aa6.61□□□□□ -1.35
RFFL-202ENST00000394597 ANAPC15P60006 121 aa6.61□□□□□ -1.35
RFFL-202ENST00000394597 TIMM10P62072 90 aa6.61□□□□□ -1.35
RFFL-202ENST00000394597 FAM193AP78312 1265 aa6.61□□□□□ -1.35
RFFL-202ENST00000394597 TTLL5Q6EMB2 1281 aa6.61□□□□□ -1.35
RFFL-202ENST00000394597 CCDC34Q96HJ3 373 aa6.61□□□□□ -1.35
RFFL-202ENST00000394597 QTRT2Q9H974 415 aaKnown RBP6.61□□□□□ -1.35
RFFL-202ENST00000394597 TMEM51Q9NW97 253 aa6.61□□□□□ -1.35
RFFL-202ENST00000394597 KNDC1Q76NI1 1749 aa6.61□□□□□ -1.35
RFFL-202ENST00000394597 PCCAP05165 728 aaPredicted RBP6.61□□□□□ -1.35
RFFL-202ENST00000394597 HMGB1P09429 215 aaKnown RBP6.61□□□□□ -1.35
RFFL-202ENST00000394597 MNAT1P51948 309 aa6.61□□□□□ -1.35
RFFL-202ENST00000394597 STK3Q13188 491 aa6.61□□□□□ -1.35
RFFL-202ENST00000394597 MCMDC2Q4G0Z9 681 aa6.61□□□□□ -1.35
RFFL-202ENST00000394597 CEP135Q66GS9 1140 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms