RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 KCNJ4P48050 445 aa30.3■■■□□ 2.44
SHOX2-201ENST00000389589 PRPF40BQ6NWY9 871 aaKnown RBP30.3■■■□□ 2.44
SHOX2-201ENST00000389589 GOLIM4O00461 696 aa30.29■■■□□ 2.44
SHOX2-201ENST00000389589 NTSR2O95665 410 aa30.29■■■□□ 2.44
SHOX2-201ENST00000389589 MCM4P33991 863 aa30.29■■■□□ 2.44
SHOX2-201ENST00000389589 ATP2B3Q16720 1220 aa30.29■■■□□ 2.44
SHOX2-201ENST00000389589 TTC39AQ5SRH9 613 aa30.29■■■□□ 2.44
SHOX2-201ENST00000389589 CUL4AQ13619 759 aa30.28■■■□□ 2.44
SHOX2-201ENST00000389589 RNF20Q5VTR2 975 aa30.28■■■□□ 2.44
SHOX2-201ENST00000389589 PTF1AQ7RTS3 328 aa30.28■■■□□ 2.44
SHOX2-201ENST00000389589 TAF1LQ8IZX4 1826 aa30.28■■■□□ 2.44
SHOX2-201ENST00000389589 NUCB2P80303 420 aa30.27■■■□□ 2.44
SHOX2-201ENST00000389589 MCMDC2Q4G0Z9 681 aa30.27■■■□□ 2.44
SHOX2-201ENST00000389589 RTL9Q8NET4 1388 aa30.27■■■□□ 2.44
SHOX2-201ENST00000389589 HCLS1P14317 486 aaPredicted RBP30.27■■■□□ 2.44
SHOX2-201ENST00000389589 CREB3L3Q68CJ9 461 aa30.27■■■□□ 2.44
SHOX2-201ENST00000389589 TNPO1Q92973 898 aaKnown RBP30.27■■■□□ 2.44
SHOX2-201ENST00000389589 TAF5LO75529 589 aa30.26■■■□□ 2.43
SHOX2-201ENST00000389589 CCDC152Q4G0S7 254 aa30.26■■■□□ 2.43
SHOX2-201ENST00000389589 ZNF589Q86UQ0 364 aaPredicted RBP30.26■■■□□ 2.43
SHOX2-201ENST00000389589 VGLL2Q8N8G2 317 aa30.26■■■□□ 2.43
SHOX2-201ENST00000389589 TTC14Q96N46 770 aa30.26■■■□□ 2.43
SHOX2-201ENST00000389589 MROH5Q6ZUA9 1318 aa30.26■■■□□ 2.43
SHOX2-201ENST00000389589 FAM177BA6PVY3 158 aa30.26■■■□□ 2.43
SHOX2-201ENST00000389589 ADORA1P30542 326 aa30.26■■■□□ 2.43
SHOX2-201ENST00000389589 LRRFIP1Q32MZ4 808 aaKnown RBP30.26■■■□□ 2.43
SHOX2-201ENST00000389589 INTS4Q96HW7 963 aaKnown RBP30.26■■■□□ 2.43
SHOX2-201ENST00000389589 HELLSQ9NRZ9 838 aa30.26■■■□□ 2.43
SHOX2-201ENST00000389589 GBP4Q96PP9 640 aa30.25■■■□□ 2.43
SHOX2-201ENST00000389589 HMG20BQ9P0W2 317 aa30.25■■■□□ 2.43
SHOX2-201ENST00000389589 ARAP2Q8WZ64 1704 aa30.25■■■□□ 2.43
SHOX2-201ENST00000389589 RPS6KA4O75676 772 aa30.24■■■□□ 2.43
SHOX2-201ENST00000389589 PDE8BO95263 885 aa30.24■■■□□ 2.43
SHOX2-201ENST00000389589 CASTP20810 708 aaKnown RBP30.24■■■□□ 2.43
SHOX2-201ENST00000389589 CCNL1Q9UK58 526 aaPredicted RBP30.24■■■□□ 2.43
SHOX2-201ENST00000389589 SLC27A2O14975 620 aa30.23■■■□□ 2.43
SHOX2-201ENST00000389589 ZSWIM6Q9HCJ5 1215 aa30.23■■■□□ 2.43
SHOX2-201ENST00000389589 MYH7P12883 1935 aa30.23■■■□□ 2.43
SHOX2-201ENST00000389589 DDX11L8A8MPP1 907 aa30.23■■■□□ 2.43
SHOX2-201ENST00000389589 KCNQ4P56696 695 aa30.23■■■□□ 2.43
SHOX2-201ENST00000389589 USPL1Q5W0Q7 1092 aa30.23■■■□□ 2.43
SHOX2-201ENST00000389589 ZNF512BQ96KM6 892 aaPredicted RBP30.23■■■□□ 2.43
SHOX2-201ENST00000389589 JAKMIP1Q96N16 626 aaKnown RBP30.23■■■□□ 2.43
SHOX2-201ENST00000389589 PSMA5P28066 241 aa30.22■■■□□ 2.43
SHOX2-201ENST00000389589 SSFA2P28290 1259 aa30.22■■■□□ 2.43
SHOX2-201ENST00000389589 CYP46A1Q9Y6A2 500 aa30.22■■■□□ 2.43
SHOX2-201ENST00000389589 AKAP11Q9UKA4 1901 aa30.21■■■□□ 2.43
SHOX2-201ENST00000389589 FAM182BQ5T319 152 aa30.21■■■□□ 2.43
SHOX2-201ENST00000389589 SEPT12Q8IYM1 358 aa30.21■■■□□ 2.43
SHOX2-201ENST00000389589 ZGPATQ8N5A5 531 aaKnown RBP30.21■■■□□ 2.43
SHOX2-201ENST00000389589 TSGA10IPQ3SY00 556 aa30.21■■■□□ 2.43
SHOX2-201ENST00000389589 ZMYM1Q5SVZ6 1142 aa30.21■■■□□ 2.43
SHOX2-201ENST00000389589 VPS53Q5VIR6 699 aa30.21■■■□□ 2.43
SHOX2-201ENST00000389589 NARFQ9UHQ1 456 aa30.21■■■□□ 2.43
SHOX2-201ENST00000389589 U3KPZ7 1027 aaPredicted RBP30.21■■■□□ 2.43
SHOX2-201ENST00000389589 RNF113AO15541 343 aaKnown RBP30.2■■■□□ 2.43
SHOX2-201ENST00000389589 MPHOSPH8Q99549 860 aa30.2■■■□□ 2.43
SHOX2-201ENST00000389589 DEKP35659 375 aaKnown RBP30.19■■■□□ 2.42
SHOX2-201ENST00000389589 FKBP4Q02790 459 aaKnown RBP eCLIP30.19■■■□□ 2.42
SHOX2-201ENST00000389589 PUM3Q15397 648 aaKnown RBP30.19■■■□□ 2.42
SHOX2-201ENST00000389589 CASZ1Q86V15 1759 aa30.19■■■□□ 2.42
SHOX2-201ENST00000389589 RPAP1Q9BWH6 1393 aaPredicted RBP30.19■■■□□ 2.42
SHOX2-201ENST00000389589 ADCK5Q3MIX3 580 aa30.19■■■□□ 2.42
SHOX2-201ENST00000389589 CLEC17AQ6ZS10 378 aa30.19■■■□□ 2.42
SHOX2-201ENST00000389589 RUFY3Q7L099 469 aa30.19■■■□□ 2.42
SHOX2-201ENST00000389589 LIMCH1Q9UPQ0 1083 aa30.19■■■□□ 2.42
SHOX2-201ENST00000389589 ZFYP08048 801 aaPredicted RBP30.18■■■□□ 2.42
SHOX2-201ENST00000389589 AK2P54819 239 aa30.18■■■□□ 2.42
SHOX2-201ENST00000389589 NOL8Q76FK4 1167 aaKnown RBP30.18■■■□□ 2.42
SHOX2-201ENST00000389589 LPIN2Q92539 896 aa30.18■■■□□ 2.42
SHOX2-201ENST00000389589 PDRG1Q9NUG6 133 aa30.18■■■□□ 2.42
SHOX2-201ENST00000389589 CYP2E1P05181 493 aaPredicted RBP30.18■■■□□ 2.42
SHOX2-201ENST00000389589 IGHMBP2P38935 993 aaKnown RBP30.18■■■□□ 2.42
SHOX2-201ENST00000389589 SEC62Q99442 399 aaKnown RBP30.18■■■□□ 2.42
SHOX2-201ENST00000389589 COL24A1Q17RW2 1714 aa30.17■■■□□ 2.42
SHOX2-201ENST00000389589 GNPATO15228 680 aa30.16■■■□□ 2.42
SHOX2-201ENST00000389589 PTMSP20962 102 aa30.16■■■□□ 2.42
SHOX2-201ENST00000389589 KRT32Q14532 448 aa30.16■■■□□ 2.42
SHOX2-201ENST00000389589 RTCBQ9Y3I0 505 aaKnown RBP30.16■■■□□ 2.42
SHOX2-201ENST00000389589 FGFR2P21802 821 aa30.16■■■□□ 2.42
SHOX2-201ENST00000389589 CCDC129Q6ZRS4 1044 aa30.16■■■□□ 2.42
SHOX2-201ENST00000389589 SEC31BQ9NQW1 1179 aa30.16■■■□□ 2.42
SHOX2-201ENST00000389589 C4BP0C0L5 1744 aa30.15■■■□□ 2.42
SHOX2-201ENST00000389589 GSE1Q14687 1217 aa30.15■■■□□ 2.42
SHOX2-201ENST00000389589 QTRT2Q9H974 415 aaKnown RBP30.15■■■□□ 2.42
SHOX2-201ENST00000389589 ZPR1O75312 459 aa30.15■■■□□ 2.42
SHOX2-201ENST00000389589 CHGBP05060 677 aa30.15■■■□□ 2.42
SHOX2-201ENST00000389589 UQCRFS1P1P0C7P4 283 aa30.15■■■□□ 2.42
SHOX2-201ENST00000389589 DSCC1Q9BVC3 393 aa30.15■■■□□ 2.42
SHOX2-201ENST00000389589 BCL11BQ9C0K0 894 aaPredicted RBP30.15■■■□□ 2.42
SHOX2-201ENST00000389589 BCL2L12Q9HB09 334 aa30.15■■■□□ 2.42
SHOX2-201ENST00000389589 SLC5A1P13866 664 aa30.14■■■□□ 2.42
SHOX2-201ENST00000389589 SCARF1Q14162 830 aa30.14■■■□□ 2.42
SHOX2-201ENST00000389589 CDC5LQ99459 802 aaKnown RBP30.14■■■□□ 2.42
SHOX2-201ENST00000389589 NYXQ9GZU5 481 aa30.14■■■□□ 2.42
SHOX2-201ENST00000389589 ZAP70P43403 619 aa30.13■■■□□ 2.41
SHOX2-201ENST00000389589 ERFEQ4G0M1 354 aa30.13■■■□□ 2.41
SHOX2-201ENST00000389589 ZSCAN31Q96LW9 406 aaPredicted RBP30.13■■■□□ 2.41
SHOX2-201ENST00000389589 TTF1Q15361 905 aaPredicted RBP30.13■■■□□ 2.41
SHOX2-201ENST00000389589 SF3B3Q15393 1217 aaKnown RBP30.13■■■□□ 2.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms