RNA–Protein interactions for RNA: ENST00000374732.7

USP48-203, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 3,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-203ENST00000374732 PABPN1LA6NDY0 278 aaKnown RBP9.32□□□□□ -0.92
USP48-203ENST00000374732 RFX1P22670 979 aa9.32□□□□□ -0.92
USP48-203ENST00000374732 CCDC178Q5BJE1 867 aa9.32□□□□□ -0.92
USP48-203ENST00000374732 ARHGEF25Q86VW2 580 aa9.32□□□□□ -0.92
USP48-203ENST00000374732 GOLGA6L1Q8N7Z2 621 aa9.32□□□□□ -0.92
USP48-203ENST00000374732 COMMD8Q9NX08 183 aa9.32□□□□□ -0.92
USP48-203ENST00000374732 OFD1O75665 1012 aa9.31□□□□□ -0.92
USP48-203ENST00000374732 SYCP2LQ5T4T6 812 aa9.31□□□□□ -0.92
USP48-203ENST00000374732 TMEM110Q86TL2 294 aa9.31□□□□□ -0.92
USP48-203ENST00000374732 GABPB2Q8TAK5 448 aaPredicted RBP9.31□□□□□ -0.92
USP48-203ENST00000374732 BCL2L13Q9BXK5 485 aa9.31□□□□□ -0.92
USP48-203ENST00000374732 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.31□□□□□ -0.92
USP48-203ENST00000374732 ALKQ9UM73 1620 aa9.31□□□□□ -0.92
USP48-203ENST00000374732 ERBB4Q15303 1308 aa9.31□□□□□ -0.92
USP48-203ENST00000374732 ALDH1B1P30837 517 aa9.31□□□□□ -0.92
USP48-203ENST00000374732 LLGL2Q6P1M3 1020 aa9.31□□□□□ -0.92
USP48-203ENST00000374732 SLC43A3Q8NBI5 491 aa9.31□□□□□ -0.92
USP48-203ENST00000374732 TATDN2Q93075 761 aa9.31□□□□□ -0.92
USP48-203ENST00000374732 FAM81BQ96LP2 452 aa9.31□□□□□ -0.92
USP48-203ENST00000374732 CARD11Q9BXL7 1154 aa9.31□□□□□ -0.92
USP48-203ENST00000374732 DHX36Q9H2U1 1008 aaKnown RBP9.31□□□□□ -0.92
USP48-203ENST00000374732 TBC1D2BQ9UPU7 963 aa9.31□□□□□ -0.92
USP48-203ENST00000374732 COL4A3BPQ9Y5P4 624 aa9.31□□□□□ -0.92
USP48-203ENST00000374732 E9PCH4 1651 aa9.31□□□□□ -0.92
USP48-203ENST00000374732 PREPLQ4J6C6 727 aaPredicted RBP9.31□□□□□ -0.92
USP48-203ENST00000374732 AP1ARQ63HQ0 302 aa9.31□□□□□ -0.92
USP48-203ENST00000374732 ANKRD13DQ6ZTN6 518 aa9.31□□□□□ -0.92
USP48-203ENST00000374732 SAMD14Q8IZD0 417 aaPredicted RBP9.31□□□□□ -0.92
USP48-203ENST00000374732 NELL1Q92832 810 aa9.31□□□□□ -0.92
USP48-203ENST00000374732 VEZTQ9HBM0 779 aa9.31□□□□□ -0.92
USP48-203ENST00000374732 KMT5AQ9NQR1 393 aa9.31□□□□□ -0.92
USP48-203ENST00000374732 KRT38O76015 456 aa9.3□□□□□ -0.92
USP48-203ENST00000374732 S100BP04271 92 aaPredicted RBP9.3□□□□□ -0.92
USP48-203ENST00000374732 ATP6V1AP38606 617 aa9.3□□□□□ -0.92
USP48-203ENST00000374732 WWC2Q6AWC2 1192 aa9.3□□□□□ -0.92
USP48-203ENST00000374732 ARHGAP27Q6ZUM4 889 aa9.3□□□□□ -0.92
USP48-203ENST00000374732 FLCNQ8NFG4 579 aa9.3□□□□□ -0.92
USP48-203ENST00000374732 BICD1Q96G01 975 aa9.3□□□□□ -0.92
USP48-203ENST00000374732 MMTAG2Q9BU76 263 aaKnown RBP9.3□□□□□ -0.92
USP48-203ENST00000374732 UNC45AQ9H3U1 944 aa9.3□□□□□ -0.92
USP48-203ENST00000374732 CHMP3Q9Y3E7 222 aa9.3□□□□□ -0.92
USP48-203ENST00000374732 TBX22Q9Y458 520 aa9.3□□□□□ -0.92
USP48-203ENST00000374732 RBM6P78332 1123 aaKnown RBP9.3□□□□□ -0.92
USP48-203ENST00000374732 SRPK2P78362 688 aaKnown RBP9.3□□□□□ -0.92
USP48-203ENST00000374732 SART3Q15020 963 aaKnown RBP9.3□□□□□ -0.92
USP48-203ENST00000374732 DHRS1Q96LJ7 313 aa9.3□□□□□ -0.92
USP48-203ENST00000374732 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.3□□□□□ -0.92
USP48-203ENST00000374732 TET3O43151 1660 aa9.3□□□□□ -0.92
USP48-203ENST00000374732 TRPM2O94759 1503 aa9.3□□□□□ -0.92
USP48-203ENST00000374732 SPAG9O60271 1321 aaKnown RBP9.3□□□□□ -0.92
USP48-203ENST00000374732 RNASEH2AO75792 299 aaKnown RBP9.29□□□□□ -0.92
USP48-203ENST00000374732 XPCQ01831 940 aaPredicted RBP9.29□□□□□ -0.92
USP48-203ENST00000374732 SAFB2Q14151 953 aaKnown RBP eCLIP9.29□□□□□ -0.921e-6■■■□□ 15.2
USP48-203ENST00000374732 HELQQ8TDG4 1101 aa9.29□□□□□ -0.92
USP48-203ENST00000374732 R3HCC1Q9Y3T6 440 aaKnown RBP9.29□□□□□ -0.92
USP48-203ENST00000374732 CFAP65Q6ZU64 1925 aaKnown RBP9.29□□□□□ -0.92
USP48-203ENST00000374732 SESN3P58005 492 aa9.29□□□□□ -0.92
USP48-203ENST00000374732 TRAF1Q13077 416 aa9.29□□□□□ -0.92
USP48-203ENST00000374732 COBLL1Q53SF7 1204 aa9.29□□□□□ -0.92
USP48-203ENST00000374732 MCTP2Q6DN12 878 aa9.29□□□□□ -0.92
USP48-203ENST00000374732 FAAH2Q6GMR7 532 aa9.29□□□□□ -0.92
USP48-203ENST00000374732 TBK1Q9UHD2 729 aa9.29□□□□□ -0.92
USP48-203ENST00000374732 ODF2LQ9ULJ1 636 aa9.29□□□□□ -0.92
USP48-203ENST00000374732 MAFFQ9ULX9 164 aa9.29□□□□□ -0.92
USP48-203ENST00000374732 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.29□□□□□ -0.92
USP48-203ENST00000374732 IBSPP21815 317 aaPredicted RBP9.29□□□□□ -0.92
USP48-203ENST00000374732 NSUN2Q08J23 767 aaKnown RBP eCLIP9.29□□□□□ -0.92
USP48-203ENST00000374732 ATP2B3Q16720 1220 aa9.29□□□□□ -0.92
USP48-203ENST00000374732 MSL1Q68DK7 614 aa9.29□□□□□ -0.92
USP48-203ENST00000374732 OTUD6AQ7L8S5 288 aa9.29□□□□□ -0.92
USP48-203ENST00000374732 NCAPG2Q86XI2 1143 aa9.29□□□□□ -0.92
USP48-203ENST00000374732 TBC1D31Q96DN5 1066 aa9.29□□□□□ -0.92
USP48-203ENST00000374732 LDHAL6BQ9BYZ2 381 aaPredicted RBP9.29□□□□□ -0.92
USP48-203ENST00000374732 RASSF4Q9H2L5 321 aa9.29□□□□□ -0.92
USP48-203ENST00000374732 TMEM165Q9HC07 324 aa9.29□□□□□ -0.92
USP48-203ENST00000374732 UBAP1Q9NZ09 502 aa9.29□□□□□ -0.92
USP48-203ENST00000374732 CEP152O94986 1710 aa9.28□□□□□ -0.92
USP48-203ENST00000374732 MAP2K2P36507 400 aa9.28□□□□□ -0.92
USP48-203ENST00000374732 PIK3CAP42336 1068 aa9.28□□□□□ -0.92
USP48-203ENST00000374732 EPAS1Q99814 870 aa9.28□□□□□ -0.92
USP48-203ENST00000374732 TFIP11Q9UBB9 837 aaKnown RBP9.28□□□□□ -0.92
USP48-203ENST00000374732 ERVK-7P63135 1459 aa9.28□□□□□ -0.92
USP48-203ENST00000374732 TNRQ92752 1358 aa9.28□□□□□ -0.92
USP48-203ENST00000374732 SPHKAPQ2M3C7 1700 aa9.28□□□□□ -0.92
USP48-203ENST00000374732 ANKRD45Q5TZF3 282 aa9.28□□□□□ -0.92
USP48-203ENST00000374732 NAIF1Q69YI7 327 aaPredicted RBP9.28□□□□□ -0.92
USP48-203ENST00000374732 MCM10Q7L590 875 aa9.28□□□□□ -0.92
USP48-203ENST00000374732 JARID2Q92833 1246 aaPredicted RBP9.28□□□□□ -0.92
USP48-203ENST00000374732 XPO4Q9C0E2 1151 aaKnown RBP9.28□□□□□ -0.92
USP48-203ENST00000374732 IKBKGQ9Y6K9 419 aa9.28□□□□□ -0.92
USP48-203ENST00000374732 CDK12Q9NYV4 1490 aaPredicted RBP9.28□□□□□ -0.92
USP48-203ENST00000374732 PRC1O43663 620 aa9.27□□□□□ -0.93
USP48-203ENST00000374732 CDKL5O76039 1030 aa9.27□□□□□ -0.93
USP48-203ENST00000374732 SH3BGRP55822 239 aaPredicted RBP9.27□□□□□ -0.93
USP48-203ENST00000374732 GSCP56915 257 aaPredicted RBP9.27□□□□□ -0.93
USP48-203ENST00000374732 ADCY2Q08462 1091 aa9.27□□□□□ -0.93
USP48-203ENST00000374732 TBC1D25Q3MII6 688 aa9.27□□□□□ -0.93
USP48-203ENST00000374732 FKBP15Q5T1M5 1219 aa9.27□□□□□ -0.93
USP48-203ENST00000374732 HHATQ5VTY9 493 aa9.27□□□□□ -0.93
USP48-203ENST00000374732 WDR75Q8IWA0 830 aaKnown RBP9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 155.8 ms