RNA–Protein interactions for RNA: ENST00000373019.4

SF3A3-201, Transcript of splicing factor 3a subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A3, Length 3,673 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-201ENST00000373019 PHACTR3Q96KR7 559 aa11.11□□□□□ -0.63
SF3A3-201ENST00000373019 SPATA32Q96LK8 384 aa11.11□□□□□ -0.63
SF3A3-201ENST00000373019 RAI14Q9P0K7 980 aa11.11□□□□□ -0.63
SF3A3-201ENST00000373019 TRAK1Q9UPV9 953 aa11.11□□□□□ -0.63
SF3A3-201ENST00000373019 FAN1Q9Y2M0 1017 aa11.11□□□□□ -0.63
SF3A3-201ENST00000373019 PPP1R12AO14974 1030 aaPredicted RBP11.11□□□□□ -0.63
SF3A3-201ENST00000373019 SCP2P22307 547 aa11.11□□□□□ -0.63
SF3A3-201ENST00000373019 RPAINQ86UA6 219 aa11.11□□□□□ -0.63
SF3A3-201ENST00000373019 AMOTL2Q9Y2J4 779 aa11.11□□□□□ -0.63
SF3A3-201ENST00000373019 NRXN1Q9ULB1 1477 aa11.11□□□□□ -0.63
SF3A3-201ENST00000373019 GOLIM4O00461 696 aa11.1□□□□□ -0.63
SF3A3-201ENST00000373019 MAP3K9P80192 1104 aa11.1□□□□□ -0.63
SF3A3-201ENST00000373019 SCAND2PQ9GZW5 306 aaPredicted RBP11.1□□□□□ -0.63
SF3A3-201ENST00000373019 SRGAP3O43295 1099 aa11.1□□□□□ -0.63
SF3A3-201ENST00000373019 KCNA6P17658 529 aa11.1□□□□□ -0.63
SF3A3-201ENST00000373019 ME3Q16798 604 aa11.1□□□□□ -0.63
SF3A3-201ENST00000373019 BEND6Q5SZJ8 279 aaPredicted RBP11.1□□□□□ -0.63
SF3A3-201ENST00000373019 NEURL4Q96JN8 1562 aa11.1□□□□□ -0.63
SF3A3-201ENST00000373019 CCDC151A5D8V7 595 aa11.1□□□□□ -0.63
SF3A3-201ENST00000373019 MAP2K1Q02750 393 aaPredicted RBP11.1□□□□□ -0.63
SF3A3-201ENST00000373019 TRDNQ13061 729 aa11.1□□□□□ -0.63
SF3A3-201ENST00000373019 LARP1BQ659C4 914 aaKnown RBP11.1□□□□□ -0.63
SF3A3-201ENST00000373019 ADGRB1O14514 1584 aa11.09□□□□□ -0.63
SF3A3-201ENST00000373019 SETD1AO15047 1707 aaKnown RBP11.09□□□□□ -0.63
SF3A3-201ENST00000373019 PNPLA6Q8IY17 1366 aa11.09□□□□□ -0.63
SF3A3-201ENST00000373019 GOLGA6L4A6NEF3 574 aa11.09□□□□□ -0.63
SF3A3-201ENST00000373019 FCHSD2O94868 740 aa11.09□□□□□ -0.63
SF3A3-201ENST00000373019 ATF3P18847 181 aa11.09□□□□□ -0.63
SF3A3-201ENST00000373019 MNAT1P51948 309 aa11.09□□□□□ -0.63
SF3A3-201ENST00000373019 INHBEP58166 350 aa11.09□□□□□ -0.63
SF3A3-201ENST00000373019 TTLL5Q6EMB2 1281 aa11.09□□□□□ -0.63
SF3A3-201ENST00000373019 RABGGTAQ92696 567 aa11.09□□□□□ -0.63
SF3A3-201ENST00000373019 LSG1Q9H089 658 aaKnown RBP11.09□□□□□ -0.63
SF3A3-201ENST00000373019 PPFIA4O75335 1185 aa11.09□□□□□ -0.63
SF3A3-201ENST00000373019 MCM6Q14566 821 aa11.09□□□□□ -0.63
SF3A3-201ENST00000373019 C11orf91Q3C1V1 193 aa11.09□□□□□ -0.63
SF3A3-201ENST00000373019 FAM43BQ6ZT52 329 aaPredicted RBP11.09□□□□□ -0.63
SF3A3-201ENST00000373019 NECAB1Q8N987 351 aa11.09□□□□□ -0.63
SF3A3-201ENST00000373019 BICC1Q9H694 974 aaKnown RBP11.09□□□□□ -0.63
SF3A3-201ENST00000373019 C21orf2O43822 256 aa11.08□□□□□ -0.63
SF3A3-201ENST00000373019 DIAPH1O60610 1272 aaKnown RBP11.08□□□□□ -0.63
SF3A3-201ENST00000373019 PRKAR2BP31323 418 aa11.08□□□□□ -0.63
SF3A3-201ENST00000373019 PPP2R5AQ15172 486 aa11.08□□□□□ -0.63
SF3A3-201ENST00000373019 ZRSR1Q15695 479 aaKnown RBP11.08□□□□□ -0.63
SF3A3-201ENST00000373019 STX1AQ16623 288 aa11.08□□□□□ -0.63
SF3A3-201ENST00000373019 LRCH2Q5VUJ6 765 aa11.08□□□□□ -0.63
SF3A3-201ENST00000373019 CNKSR2Q8WXI2 1034 aa11.08□□□□□ -0.63
SF3A3-201ENST00000373019 FAXDC2Q96IV6 333 aa11.08□□□□□ -0.63
SF3A3-201ENST00000373019 GGNBP2Q9H3C7 697 aa11.08□□□□□ -0.63
SF3A3-201ENST00000373019 MRFAP1Q9Y605 127 aa11.08□□□□□ -0.63
SF3A3-201ENST00000373019 EVC2Q86UK5 1308 aa11.08□□□□□ -0.64
SF3A3-201ENST00000373019 BECN2A8MW95 431 aa11.08□□□□□ -0.64
SF3A3-201ENST00000373019 EXOC5O00471 708 aa11.08□□□□□ -0.64
SF3A3-201ENST00000373019 FBXW10Q5XX13 1052 aa11.08□□□□□ -0.64
SF3A3-201ENST00000373019 MSL3Q8N5Y2 521 aaKnown RBP11.08□□□□□ -0.64
SF3A3-201ENST00000373019 CCDC150Q8NCX0 1101 aa11.08□□□□□ -0.64
SF3A3-201ENST00000373019 SUGCTQ9HAC7 445 aa11.08□□□□□ -0.64
SF3A3-201ENST00000373019 STAP2Q9UGK3 403 aa11.08□□□□□ -0.64
SF3A3-201ENST00000373019 SFPQP23246 707 aaKnown RBP eCLIP11.08□□□□□ -0.64
SF3A3-201ENST00000373019 ADCK5Q3MIX3 580 aa11.08□□□□□ -0.64
SF3A3-201ENST00000373019 HNRNPLLQ8WVV9 542 aaKnown RBP11.08□□□□□ -0.64
SF3A3-201ENST00000373019 CLIC6Q96NY7 704 aa11.08□□□□□ -0.64
SF3A3-201ENST00000373019 IFT172Q9UG01 1749 aa11.08□□□□□ -0.64
SF3A3-201ENST00000373019 VWA3AA6NCI4 1184 aa11.07□□□□□ -0.64
SF3A3-201ENST00000373019 SGSM2O43147 1006 aa11.07□□□□□ -0.64
SF3A3-201ENST00000373019 TXLNAP40222 546 aa11.07□□□□□ -0.64
SF3A3-201ENST00000373019 GNL2Q13823 731 aaKnown RBP11.07□□□□□ -0.64
SF3A3-201ENST00000373019 AOPEPQ8N6M6 819 aa11.07□□□□□ -0.64
SF3A3-201ENST00000373019 CNNM3Q8NE01 707 aa11.07□□□□□ -0.64
SF3A3-201ENST00000373019 WDR24Q96S15 920 aa11.07□□□□□ -0.64
SF3A3-201ENST00000373019 XPO4Q9C0E2 1151 aaKnown RBP11.07□□□□□ -0.64
SF3A3-201ENST00000373019 ZNF142P52746 1687 aaPredicted RBP11.07□□□□□ -0.64
SF3A3-201ENST00000373019 TOM1O60784 492 aa11.07□□□□□ -0.64
SF3A3-201ENST00000373019 ERLIN2O94905 339 aa11.07□□□□□ -0.64
SF3A3-201ENST00000373019 PPP2R3AQ06190 1150 aa11.07□□□□□ -0.64
SF3A3-201ENST00000373019 TMC6Q7Z403 805 aa11.07□□□□□ -0.64
SF3A3-201ENST00000373019 BICD2Q8TD16 824 aa11.07□□□□□ -0.64
SF3A3-201ENST00000373019 L1RE1Q9UN81 338 aa11.07□□□□□ -0.64
SF3A3-201ENST00000373019 SLIT1O75093 1534 aa11.07□□□□□ -0.64
SF3A3-201ENST00000373019 CDC42BPGQ6DT37 1551 aa11.07□□□□□ -0.64
SF3A3-201ENST00000373019 UBR1Q8IWV7 1749 aa11.07□□□□□ -0.64
SF3A3-201ENST00000373019 PSME1Q06323 249 aa11.07□□□□□ -0.64
SF3A3-201ENST00000373019 BRD3Q15059 726 aa11.07□□□□□ -0.64
SF3A3-201ENST00000373019 WWC2Q6AWC2 1192 aa11.07□□□□□ -0.64
SF3A3-201ENST00000373019 ANKZF1Q9H8Y5 726 aa11.07□□□□□ -0.64
SF3A3-201ENST00000373019 ADGRL3Q9HAR2 1447 aa11.07□□□□□ -0.64
SF3A3-201ENST00000373019 ARHGAP23Q9P227 1491 aa11.07□□□□□ -0.64
SF3A3-201ENST00000373019 EIF5P55010 431 aaKnown RBP11.06□□□□□ -0.64
SF3A3-201ENST00000373019 COL9A3Q14050 684 aaPredicted RBP11.06□□□□□ -0.64
SF3A3-201ENST00000373019 NFE2L2Q16236 605 aa11.06□□□□□ -0.64
SF3A3-201ENST00000373019 MIEF2Q96C03 454 aa11.06□□□□□ -0.64
SF3A3-201ENST00000373019 LIG3P49916 1009 aa11.06□□□□□ -0.64
SF3A3-201ENST00000373019 SH2B1Q9NRF2 756 aaPredicted RBP11.06□□□□□ -0.64
SF3A3-201ENST00000373019 USP5P45974 858 aa11.06□□□□□ -0.64
SF3A3-201ENST00000373019 CPLX2Q6PUV4 134 aaKnown RBP11.06□□□□□ -0.64
SF3A3-201ENST00000373019 CERKQ8TCT0 537 aa11.06□□□□□ -0.64
SF3A3-201ENST00000373019 LRRCC1Q9C099 1032 aa11.06□□□□□ -0.64
SF3A3-201ENST00000373019 TPCN1Q9ULQ1 816 aa11.06□□□□□ -0.64
SF3A3-201ENST00000373019 TMEM131LA2VDJ0 1609 aa11.05□□□□□ -0.64
SF3A3-201ENST00000373019 HMMRO75330 724 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms