RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 C6orf229H3BNL8 230 aa21.32■■□□□ 1
CLN3-203ENST00000357806 FZD9O00144 591 aa21.32■■□□□ 1
CLN3-203ENST00000357806 EYA3Q99504 573 aa21.32■■□□□ 1
CLN3-203ENST00000357806 NMRK2Q9NPI5 230 aa21.32■■□□□ 1
CLN3-203ENST00000357806 GGA1Q9UJY5 639 aa21.32■■□□□ 1
CLN3-203ENST00000357806 ZNF541Q9H0D2 1346 aa21.32■■□□□ 1
CLN3-203ENST00000357806 UBTFL1P0CB47 393 aaPredicted RBP21.32■■□□□ 1
CLN3-203ENST00000357806 WASHC4Q2M389 1173 aa21.32■■□□□ 1
CLN3-203ENST00000357806 RABL6Q3YEC7 729 aaPredicted RBP21.32■■□□□ 1
CLN3-203ENST00000357806 TAF7LQ5H9L4 462 aa21.32■■□□□ 1
CLN3-203ENST00000357806 TBC1D16Q8TBP0 767 aa21.32■■□□□ 1
CLN3-203ENST00000357806 POLLQ9UGP5 575 aa21.32■■□□□ 1
CLN3-203ENST00000357806 MINPP1Q9UNW1 487 aa21.32■■□□□ 1
CLN3-203ENST00000357806 SCN9AQ15858 1988 aa21.31■■□□□ 1
CLN3-203ENST00000357806 UFL1O94874 794 aa21.31■■□□□ 1
CLN3-203ENST00000357806 EIF6P56537 245 aaKnown RBP21.31■■□□□ 1
CLN3-203ENST00000357806 CLUAP1Q96AJ1 413 aa21.31■■□□□ 1
CLN3-203ENST00000357806 HDAC5Q9UQL6 1122 aa21.31■■□□□ 1
CLN3-203ENST00000357806 TNNQ9UQP3 1299 aa21.3■■□□□ 1
CLN3-203ENST00000357806 KIF3CO14782 793 aa21.29■■□□□ 1
CLN3-203ENST00000357806 DDNO94850 711 aaPredicted RBP21.29■■□□□ 1
CLN3-203ENST00000357806 ATP2B4P23634 1241 aa21.29■■□□□ 1
CLN3-203ENST00000357806 FTSJ3Q8IY81 847 aaKnown RBP21.29■■□□□ 1
CLN3-203ENST00000357806 ANKRD44Q8N8A2 993 aa21.29■■□□□ 1
CLN3-203ENST00000357806 YTHDC1Q96MU7 727 aaKnown RBP21.28■■□□□ 1
CLN3-203ENST00000357806 MEIS3Q99687 375 aa21.28■■□□□ 1
CLN3-203ENST00000357806 ANKRD2Q9GZV1 360 aa21.28■■□□□ 1
CLN3-203ENST00000357806 RRAGCQ9HB90 399 aa21.28■■□□□ 1
CLN3-203ENST00000357806 ZNRF3Q9ULT6 936 aa21.28■■□□□ 1
CLN3-203ENST00000357806 ZNF646O15015 1829 aaPredicted RBP21.28■■□□□ 1
CLN3-203ENST00000357806 RIMBP2O15034 1052 aa21.27■■□□□ 1
CLN3-203ENST00000357806 GPC2Q8N158 579 aa21.27■■□□□ 1
CLN3-203ENST00000357806 ZNF594Q96JF6 807 aaPredicted RBP21.27■■□□□ 1
CLN3-203ENST00000357806 ZC3H12CQ9C0D7 883 aaKnown RBP21.27■■□□□ 1
CLN3-203ENST00000357806 RCAN3Q9UKA8 241 aa21.27■■□□□ 1
CLN3-203ENST00000357806 MED23Q9ULK4 1368 aa21.26■□□□□ 0.99
CLN3-203ENST00000357806 GNAI3P08754 354 aa21.26■□□□□ 0.99
CLN3-203ENST00000357806 VEGFAP15692 232 aaPredicted RBP21.26■□□□□ 0.99
CLN3-203ENST00000357806 CHRNDQ07001 517 aa21.26■□□□□ 0.99
CLN3-203ENST00000357806 LDHAL6AQ6ZMR3 332 aa21.26■□□□□ 0.99
CLN3-203ENST00000357806 GPR101Q96P66 508 aaPredicted RBP21.26■□□□□ 0.99
CLN3-203ENST00000357806 CNNM1Q9NRU3 951 aa21.26■□□□□ 0.99
CLN3-203ENST00000357806 C16orf71Q8IYS4 520 aaPredicted RBP21.26■□□□□ 0.99
CLN3-203ENST00000357806 DZIP1LQ8IYY4 767 aaKnown RBP21.26■□□□□ 0.99
CLN3-203ENST00000357806 TMEM57Q8N5G2 664 aa21.26■□□□□ 0.99
CLN3-203ENST00000357806 L3MBTL3Q96JM7 780 aaPredicted RBP21.26■□□□□ 0.99
CLN3-203ENST00000357806 LEMD3Q9Y2U8 911 aa21.26■□□□□ 0.99
CLN3-203ENST00000357806 DBNDD1Q9H9R9 158 aa21.25■□□□□ 0.99
CLN3-203ENST00000357806 LRRFIP2Q9Y608 721 aaKnown RBP21.25■□□□□ 0.99
CLN3-203ENST00000357806 MYH13Q9UKX3 1938 aa21.25■□□□□ 0.99
CLN3-203ENST00000357806 IQCA1LA6NCM1 817 aa21.24■□□□□ 0.99
CLN3-203ENST00000357806 GJA3Q9Y6H8 435 aa21.24■□□□□ 0.99
CLN3-203ENST00000357806 G3V3G9 751 aa21.23■□□□□ 0.99
CLN3-203ENST00000357806 ECE2O60344 883 aa21.23■□□□□ 0.99
CLN3-203ENST00000357806 KCNJ4P48050 445 aa21.23■□□□□ 0.99
CLN3-203ENST00000357806 DCAF8Q5TAQ9 597 aa21.23■□□□□ 0.99
CLN3-203ENST00000357806 ZNF804BA4D1E1 1349 aa21.23■□□□□ 0.99
CLN3-203ENST00000357806 YDJCA8MPS7 323 aa21.22■□□□□ 0.99
CLN3-203ENST00000357806 POTECB2RU33 542 aa21.22■□□□□ 0.99
CLN3-203ENST00000357806 TOMM70O94826 608 aa21.22■□□□□ 0.99
CLN3-203ENST00000357806 MS4A1P11836 297 aa21.22■□□□□ 0.99
CLN3-203ENST00000357806 CXCL9Q07325 125 aa21.22■□□□□ 0.99
CLN3-203ENST00000357806 CIAPIN1Q6FI81 312 aa21.22■□□□□ 0.99
CLN3-203ENST00000357806 ADAMTSL1Q8N6G6 1762 aa21.22■□□□□ 0.99
CLN3-203ENST00000357806 DOK7Q18PE1 504 aa21.21■□□□□ 0.99
CLN3-203ENST00000357806 ITPRIPQ8IWB1 547 aa21.21■□□□□ 0.99
CLN3-203ENST00000357806 RLBP1P12271 317 aa21.2■□□□□ 0.98
CLN3-203ENST00000357806 C1QTNF8P60827 252 aa21.2■□□□□ 0.98
CLN3-203ENST00000357806 TNIP1Q15025 636 aa21.2■□□□□ 0.98
CLN3-203ENST00000357806 MROH5Q6ZUA9 1318 aa21.2■□□□□ 0.98
CLN3-203ENST00000357806 WTIPA6NIX2 430 aaPredicted RBP21.2■□□□□ 0.98
CLN3-203ENST00000357806 TAF5LO75529 589 aa21.2■□□□□ 0.98
CLN3-203ENST00000357806 RAD17O75943 681 aa21.2■□□□□ 0.98
CLN3-203ENST00000357806 GNAI2P04899 355 aa21.2■□□□□ 0.98
CLN3-203ENST00000357806 HELBQ8NG08 1087 aaPredicted RBP21.2■□□□□ 0.98
CLN3-203ENST00000357806 PUS3Q9BZE2 481 aaKnown RBP21.2■□□□□ 0.98
CLN3-203ENST00000357806 HACL1Q9UJ83 578 aa21.2■□□□□ 0.98
CLN3-203ENST00000357806 LMOD1P29536 600 aaPredicted RBP21.19■□□□□ 0.98
CLN3-203ENST00000357806 RFX5P48382 616 aaPredicted RBP21.19■□□□□ 0.98
CLN3-203ENST00000357806 KLHDC4Q8TBB5 520 aa21.19■□□□□ 0.98
CLN3-203ENST00000357806 RIPOR2Q9Y4F9 1068 aa21.19■□□□□ 0.98
CLN3-203ENST00000357806 ARAP2Q8WZ64 1704 aa21.18■□□□□ 0.98
CLN3-203ENST00000357806 PLIN1O60240 522 aa21.18■□□□□ 0.98
CLN3-203ENST00000357806 RBM46Q8TBY0 533 aaKnown RBP21.18■□□□□ 0.98
CLN3-203ENST00000357806 SCNN1DP51172 638 aa21.17■□□□□ 0.98
CLN3-203ENST00000357806 PTPN12Q05209 780 aaKnown RBP21.17■□□□□ 0.98
CLN3-203ENST00000357806 LRRC24Q50LG9 513 aa21.17■□□□□ 0.98
CLN3-203ENST00000357806 PODNQ7Z5L7 613 aa21.17■□□□□ 0.98
CLN3-203ENST00000357806 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.17■□□□□ 0.98
CLN3-203ENST00000357806 PANK1Q8TE04 598 aa21.17■□□□□ 0.98
CLN3-203ENST00000357806 TAF1DQ9H5J8 278 aaPredicted RBP21.17■□□□□ 0.98
CLN3-203ENST00000357806 PSMD14O00487 310 aa21.16■□□□□ 0.98
CLN3-203ENST00000357806 EPHX2P34913 555 aa21.16■□□□□ 0.98
CLN3-203ENST00000357806 MTX1Q13505 466 aa21.16■□□□□ 0.98
CLN3-203ENST00000357806 METTL24Q5JXM2 366 aa21.16■□□□□ 0.98
CLN3-203ENST00000357806 COA1Q9GZY4 146 aa21.16■□□□□ 0.98
CLN3-203ENST00000357806 KLRK1P26718 216 aa21.15■□□□□ 0.98
CLN3-203ENST00000357806 C15orf52Q6ZUT6 534 aaKnown RBP21.15■□□□□ 0.98
CLN3-203ENST00000357806 TXNRD3Q86VQ6 643 aa21.15■□□□□ 0.98
CLN3-203ENST00000357806 FBXO3Q9UK99 471 aa21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms