RNA–Protein interactions for RNA: ENST00000354193.4

SVIP-201, Transcript of small VCP interacting protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SVIP, Length 4,541 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SVIP-201ENST00000354193 C6orf229H3BNL8 230 aa13.24□□□□□ -0.29
SVIP-201ENST00000354193 GYG1P46976 350 aa13.24□□□□□ -0.29
SVIP-201ENST00000354193 TBC1D9BQ66K14 1250 aa13.24□□□□□ -0.29
SVIP-201ENST00000354193 INTS5Q6P9B9 1019 aaKnown RBP13.24□□□□□ -0.29
SVIP-201ENST00000354193 PLCB2Q00722 1185 aa13.24□□□□□ -0.29
SVIP-201ENST00000354193 LRP10Q7Z4F1 713 aa13.24□□□□□ -0.29
SVIP-201ENST00000354193 RTN4Q9NQC3 1192 aaKnown RBP13.24□□□□□ -0.29
SVIP-201ENST00000354193 CCDC171Q6TFL3 1326 aa13.24□□□□□ -0.29
SVIP-201ENST00000354193 PSMA5P28066 241 aa13.24□□□□□ -0.29
SVIP-201ENST00000354193 CCT2P78371 535 aaKnown RBP13.24□□□□□ -0.29
SVIP-201ENST00000354193 ADCK5Q3MIX3 580 aa13.24□□□□□ -0.29
SVIP-201ENST00000354193 MCMDC2Q4G0Z9 681 aa13.24□□□□□ -0.29
SVIP-201ENST00000354193 UBN2Q6ZU65 1347 aa13.24□□□□□ -0.29
SVIP-201ENST00000354193 PARP10Q53GL7 1025 aa13.23□□□□□ -0.29
SVIP-201ENST00000354193 CREB3L3Q68CJ9 461 aa13.23□□□□□ -0.29
SVIP-201ENST00000354193 NFXL1Q6ZNB6 911 aa13.23□□□□□ -0.29
SVIP-201ENST00000354193 TNPO1Q92973 898 aaKnown RBP13.23□□□□□ -0.29
SVIP-201ENST00000354193 ATP5JP18859 108 aa13.23□□□□□ -0.29
SVIP-201ENST00000354193 SCARF1Q14162 830 aa13.23□□□□□ -0.29
SVIP-201ENST00000354193 CAVIN4Q5BKX8 364 aa13.23□□□□□ -0.29
SVIP-201ENST00000354193 TTLL5Q6EMB2 1281 aa13.23□□□□□ -0.29
SVIP-201ENST00000354193 CNBD1Q8NA66 436 aa13.23□□□□□ -0.29
SVIP-201ENST00000354193 ARHGEF1Q92888 912 aaKnown RBP13.23□□□□□ -0.29
SVIP-201ENST00000354193 SNX14Q9Y5W7 946 aa13.23□□□□□ -0.29
SVIP-201ENST00000354193 ROBO1Q9Y6N7 1651 aa13.23□□□□□ -0.29
SVIP-201ENST00000354193 PRPF40AO75400 957 aaKnown RBP13.23□□□□□ -0.29
SVIP-201ENST00000354193 TDO2P48775 406 aa13.23□□□□□ -0.29
SVIP-201ENST00000354193 AK2P54819 239 aa13.23□□□□□ -0.29
SVIP-201ENST00000354193 ATG9AQ7Z3C6 839 aa13.23□□□□□ -0.29
SVIP-201ENST00000354193 CCDC82Q8N4S0 544 aa13.23□□□□□ -0.29
SVIP-201ENST00000354193 BCL9O00512 1426 aa13.23□□□□□ -0.29
SVIP-201ENST00000354193 PKP1Q13835 747 aa13.23□□□□□ -0.29
SVIP-201ENST00000354193 GOLGA6L4A6NEF3 574 aa13.22□□□□□ -0.29
SVIP-201ENST00000354193 H3BQV1 296 aa13.22□□□□□ -0.29
SVIP-201ENST00000354193 RFX5P48382 616 aaPredicted RBP13.22□□□□□ -0.29
SVIP-201ENST00000354193 CEBPZQ03701 1054 aaKnown RBP13.22□□□□□ -0.29
SVIP-201ENST00000354193 IFFO2Q5TF58 517 aa13.22□□□□□ -0.29
SVIP-201ENST00000354193 VPS53Q5VIR6 699 aa13.22□□□□□ -0.29
SVIP-201ENST00000354193 BARGINQ6ZT62 677 aa13.22□□□□□ -0.29
SVIP-201ENST00000354193 KBTBD3Q8NAB2 608 aa13.22□□□□□ -0.29
SVIP-201ENST00000354193 ZNF622Q969S3 477 aaKnown RBP eCLIP13.22□□□□□ -0.291e-6■■□□□ 14.2
SVIP-201ENST00000354193 GNL3LQ9NVN8 582 aaKnown RBP13.22□□□□□ -0.29
SVIP-201ENST00000354193 MCM4P33991 863 aa13.22□□□□□ -0.29
SVIP-201ENST00000354193 SF3B2Q13435 895 aaKnown RBP13.22□□□□□ -0.29
SVIP-201ENST00000354193 GPR101Q96P66 508 aaPredicted RBP13.22□□□□□ -0.29
SVIP-201ENST00000354193 COL15A1P39059 1388 aa13.22□□□□□ -0.29
SVIP-201ENST00000354193 CPLX1O14810 134 aa13.21□□□□□ -0.29
SVIP-201ENST00000354193 MAGEB6Q8N7X4 407 aa13.21□□□□□ -0.29
SVIP-201ENST00000354193 FIBPO43427 364 aa13.21□□□□□ -0.29
SVIP-201ENST00000354193 PDE8BO95263 885 aa13.21□□□□□ -0.29
SVIP-201ENST00000354193 RABL6Q3YEC7 729 aaPredicted RBP13.21□□□□□ -0.29
SVIP-201ENST00000354193 BRF1Q92994 677 aa13.21□□□□□ -0.29
SVIP-201ENST00000354193 TRPM3Q9HCF6 1732 aaPredicted RBP13.21□□□□□ -0.29
SVIP-201ENST00000354193 TRAK2O60296 914 aa13.21□□□□□ -0.29
SVIP-201ENST00000354193 CCDC102BQ68D86 513 aa13.21□□□□□ -0.29
SVIP-201ENST00000354193 CCDC144CPQ8IYA2 1237 aa13.21□□□□□ -0.29
SVIP-201ENST00000354193 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.21□□□□□ -0.29
SVIP-201ENST00000354193 RAD50Q92878 1312 aa13.21□□□□□ -0.3
SVIP-201ENST00000354193 RAD21O60216 631 aa13.21□□□□□ -0.3
SVIP-201ENST00000354193 GUCY1B3Q02153 619 aa13.21□□□□□ -0.3
SVIP-201ENST00000354193 MAP3K12Q12852 859 aa13.21□□□□□ -0.3
SVIP-201ENST00000354193 KIF2CQ99661 725 aa13.21□□□□□ -0.3
SVIP-201ENST00000354193 ERVV-1B6SEH8 477 aa13.2□□□□□ -0.3
SVIP-201ENST00000354193 RIMBP2O15034 1052 aa13.2□□□□□ -0.3
SVIP-201ENST00000354193 CAMTA2O94983 1202 aa13.2□□□□□ -0.3
SVIP-201ENST00000354193 NUCB2P80303 420 aa13.2□□□□□ -0.3
SVIP-201ENST00000354193 CHRNDQ07001 517 aa13.2□□□□□ -0.3
SVIP-201ENST00000354193 GNL2Q13823 731 aaKnown RBP13.2□□□□□ -0.3
SVIP-201ENST00000354193 GSE1Q14687 1217 aa13.2□□□□□ -0.3
SVIP-201ENST00000354193 WTIPA6NIX2 430 aaPredicted RBP13.2□□□□□ -0.3
SVIP-201ENST00000354193 F8W031 263 aaPredicted RBP13.2□□□□□ -0.3
SVIP-201ENST00000354193 RNF113AO15541 343 aaKnown RBP13.2□□□□□ -0.3
SVIP-201ENST00000354193 PUM3Q15397 648 aaKnown RBP13.2□□□□□ -0.3
SVIP-201ENST00000354193 CELF1Q92879 486 aaKnown RBP13.2□□□□□ -0.3
SVIP-201ENST00000354193 SPATA31A6Q5VVP1 1343 aa13.2□□□□□ -0.3
SVIP-201ENST00000354193 NAPBQ9H115 298 aa13.2□□□□□ -0.3
SVIP-201ENST00000354193 CASP7P55210 303 aa13.19□□□□□ -0.3
SVIP-201ENST00000354193 RPS8P62241 208 aaKnown RBP13.19□□□□□ -0.3
SVIP-201ENST00000354193 PIBF1Q8WXW3 757 aa13.19□□□□□ -0.3
SVIP-201ENST00000354193 NEK1Q96PY6 1258 aa13.19□□□□□ -0.3
SVIP-201ENST00000354193 LIMCH1Q9UPQ0 1083 aa13.19□□□□□ -0.3
SVIP-201ENST00000354193 ALS2Q96Q42 1657 aa13.19□□□□□ -0.3
SVIP-201ENST00000354193 SLC27A2O14975 620 aa13.19□□□□□ -0.3
SVIP-201ENST00000354193 CYP7A1P22680 504 aa13.19□□□□□ -0.3
SVIP-201ENST00000354193 HAUS7Q99871 368 aa13.19□□□□□ -0.3
SVIP-201ENST00000354193 LSG1Q9H089 658 aaKnown RBP13.19□□□□□ -0.3
SVIP-201ENST00000354193 MCM2P49736 904 aa13.19□□□□□ -0.3
SVIP-201ENST00000354193 AOX1Q06278 1338 aa13.19□□□□□ -0.3
SVIP-201ENST00000354193 ZNF213O14771 459 aa13.18□□□□□ -0.3
SVIP-201ENST00000354193 HSPA4P34932 840 aa13.18□□□□□ -0.3
SVIP-201ENST00000354193 IMMTQ16891 758 aaKnown RBP13.18□□□□□ -0.3
SVIP-201ENST00000354193 SNX21Q969T3 373 aa13.18□□□□□ -0.3
SVIP-201ENST00000354193 RXRAP19793 462 aa13.18□□□□□ -0.3
SVIP-201ENST00000354193 LARP1BQ659C4 914 aaKnown RBP13.18□□□□□ -0.3
SVIP-201ENST00000354193 LPIN2Q92539 896 aa13.18□□□□□ -0.3
SVIP-201ENST00000354193 U3KPZ7 1027 aaPredicted RBP13.18□□□□□ -0.3
SVIP-201ENST00000354193 RPS6KA4O75676 772 aa13.18□□□□□ -0.3
SVIP-201ENST00000354193 FNBP4Q8N3X1 1017 aaPredicted RBP13.18□□□□□ -0.3
SVIP-201ENST00000354193 TAF6LQ9Y6J9 622 aa13.18□□□□□ -0.3
SVIP-201ENST00000354193 UTYO14607 1347 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms