RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 GSTO1P78417 241 aa11.76□□□□□ -0.53
CCDC88A-202ENST00000336838 STRN4Q9NRL3 753 aa11.76□□□□□ -0.53
CCDC88A-202ENST00000336838 IFIT3O14879 490 aaKnown RBP11.75□□□□□ -0.53
CCDC88A-202ENST00000336838 CERS3Q8IU89 383 aa11.75□□□□□ -0.53
CCDC88A-202ENST00000336838 ORC3Q9UBD5 711 aaPredicted RBP11.75□□□□□ -0.53
CCDC88A-202ENST00000336838 GRM8O00222 908 aa11.75□□□□□ -0.53
CCDC88A-202ENST00000336838 CEP85Q6P2H3 762 aa11.75□□□□□ -0.53
CCDC88A-202ENST00000336838 NME9Q86XW9 330 aa11.75□□□□□ -0.53
CCDC88A-202ENST00000336838 ARHGEF10O15013 1369 aa11.75□□□□□ -0.53
CCDC88A-202ENST00000336838 CDC5LQ99459 802 aaKnown RBP11.75□□□□□ -0.53
CCDC88A-202ENST00000336838 TNRQ92752 1358 aa11.75□□□□□ -0.53
CCDC88A-202ENST00000336838 PPP2R5BQ15173 497 aa11.75□□□□□ -0.53
CCDC88A-202ENST00000336838 ARFGAP2Q8N6H7 521 aa11.75□□□□□ -0.53
CCDC88A-202ENST00000336838 SYT1P21579 422 aa11.75□□□□□ -0.53
CCDC88A-202ENST00000336838 IDI1Q13907 227 aa11.75□□□□□ -0.53
CCDC88A-202ENST00000336838 EMILIN1Q9Y6C2 1016 aa11.75□□□□□ -0.53
CCDC88A-202ENST00000336838 A0A1W2PP64 1363 aa11.75□□□□□ -0.53
CCDC88A-202ENST00000336838 TMEM67Q5HYA8 995 aa11.75□□□□□ -0.53
CCDC88A-202ENST00000336838 PRIM1P49642 420 aaKnown RBP11.75□□□□□ -0.53
CCDC88A-202ENST00000336838 FAM160A1Q05DH4 1040 aa11.75□□□□□ -0.53
CCDC88A-202ENST00000336838 HDXQ7Z353 690 aa11.74□□□□□ -0.53
CCDC88A-202ENST00000336838 USP16Q9Y5T5 823 aa11.74□□□□□ -0.53
CCDC88A-202ENST00000336838 PSMA7O14818 248 aa11.74□□□□□ -0.53
CCDC88A-202ENST00000336838 BAG3O95817 575 aa11.74□□□□□ -0.53
CCDC88A-202ENST00000336838 KSR2Q6VAB6 950 aa11.74□□□□□ -0.53
CCDC88A-202ENST00000336838 MYRIPQ8NFW9 859 aa11.74□□□□□ -0.53
CCDC88A-202ENST00000336838 CNPY2Q9Y2B0 182 aa11.74□□□□□ -0.53
CCDC88A-202ENST00000336838 ARHGAP31Q2M1Z3 1444 aa11.74□□□□□ -0.53
CCDC88A-202ENST00000336838 RAPGEF3O95398 923 aa11.74□□□□□ -0.53
CCDC88A-202ENST00000336838 HSPA4P34932 840 aa11.74□□□□□ -0.53
CCDC88A-202ENST00000336838 UBA7P41226 1012 aa11.74□□□□□ -0.53
CCDC88A-202ENST00000336838 NUTM2AQ8IVF1 878 aaPredicted RBP11.74□□□□□ -0.53
CCDC88A-202ENST00000336838 RBM42Q9BTD8 480 aaKnown RBP11.74□□□□□ -0.53
CCDC88A-202ENST00000336838 EXOC1Q9NV70 894 aa11.74□□□□□ -0.53
CCDC88A-202ENST00000336838 TAX1BP1Q86VP1 789 aa11.74□□□□□ -0.53
CCDC88A-202ENST00000336838 ESR2Q92731 530 aa11.74□□□□□ -0.53
CCDC88A-202ENST00000336838 THUMPD2Q9BTF0 503 aaKnown RBP11.74□□□□□ -0.53
CCDC88A-202ENST00000336838 ABCA8O94911 1581 aa11.73□□□□□ -0.53
CCDC88A-202ENST00000336838 CUL5Q93034 780 aa11.73□□□□□ -0.53
CCDC88A-202ENST00000336838 VIRMAQ69YN4 1812 aaKnown RBP11.73□□□□□ -0.53
CCDC88A-202ENST00000336838 SAMD9LQ8IVG5 1584 aa11.73□□□□□ -0.53
CCDC88A-202ENST00000336838 ATP7BP35670 1465 aa11.73□□□□□ -0.53
CCDC88A-202ENST00000336838 CROCCP2Q86T23 111 aa11.73□□□□□ -0.53
CCDC88A-202ENST00000336838 SPTLC2O15270 562 aa11.73□□□□□ -0.53
CCDC88A-202ENST00000336838 LDHCP07864 332 aa11.73□□□□□ -0.53
CCDC88A-202ENST00000336838 MTIF2P46199 727 aaKnown RBP11.73□□□□□ -0.53
CCDC88A-202ENST00000336838 LINS1Q8NG48 757 aa11.73□□□□□ -0.53
CCDC88A-202ENST00000336838 RPGRIP1Q96KN7 1286 aa11.73□□□□□ -0.53
CCDC88A-202ENST00000336838 ZBTB43O43298 467 aa11.73□□□□□ -0.53
CCDC88A-202ENST00000336838 ZNF76P36508 570 aa11.73□□□□□ -0.53
CCDC88A-202ENST00000336838 PTPRTO14522 1441 aa11.73□□□□□ -0.53
CCDC88A-202ENST00000336838 N4BP3O15049 544 aa11.73□□□□□ -0.53
CCDC88A-202ENST00000336838 TACC1O75410 805 aa11.73□□□□□ -0.53
CCDC88A-202ENST00000336838 KLHL10Q6JEL2 608 aa11.73□□□□□ -0.53
CCDC88A-202ENST00000336838 B4GALNT4Q76KP1 1039 aa11.73□□□□□ -0.53
CCDC88A-202ENST00000336838 IFNL2Q8IZJ0 200 aa11.73□□□□□ -0.53
CCDC88A-202ENST00000336838 JADE2Q9NQC1 790 aa11.73□□□□□ -0.53
CCDC88A-202ENST00000336838 PPP4R3AQ6IN85 833 aa11.73□□□□□ -0.53
CCDC88A-202ENST00000336838 CCDC155Q8N6L0 562 aa11.73□□□□□ -0.53
CCDC88A-202ENST00000336838 PODXL2Q9NZ53 605 aa11.72□□□□□ -0.53
CCDC88A-202ENST00000336838 RBM8AQ9Y5S9 174 aaKnown RBP11.72□□□□□ -0.53
CCDC88A-202ENST00000336838 SBNO1A3KN83 1393 aa11.72□□□□□ -0.53
CCDC88A-202ENST00000336838 STAMBPO95630 424 aa11.72□□□□□ -0.53
CCDC88A-202ENST00000336838 C6orf163Q5TEZ5 329 aa11.72□□□□□ -0.53
CCDC88A-202ENST00000336838 MYD88Q99836 296 aa11.72□□□□□ -0.53
CCDC88A-202ENST00000336838 HELLSQ9NRZ9 838 aa11.72□□□□□ -0.53
CCDC88A-202ENST00000336838 LMAN1P49257 510 aa11.72□□□□□ -0.53
CCDC88A-202ENST00000336838 TICAM2Q86XR7 235 aa11.72□□□□□ -0.53
CCDC88A-202ENST00000336838 PHF8Q9UPP1 1060 aa11.72□□□□□ -0.53
CCDC88A-202ENST00000336838 STK24Q9Y6E0 443 aa11.72□□□□□ -0.53
CCDC88A-202ENST00000336838 VAMP4O75379 141 aa11.72□□□□□ -0.53
CCDC88A-202ENST00000336838 MKNK2Q9HBH9 465 aa11.72□□□□□ -0.53
CCDC88A-202ENST00000336838 RBM28Q9NW13 759 aaKnown RBP11.72□□□□□ -0.53
CCDC88A-202ENST00000336838 TBC1D5Q92609 795 aa11.72□□□□□ -0.53
CCDC88A-202ENST00000336838 MAP3K4Q9Y6R4 1608 aa11.72□□□□□ -0.53
CCDC88A-202ENST00000336838 CHMLP26374 656 aa11.72□□□□□ -0.53
CCDC88A-202ENST00000336838 GIMAP6Q6P9H5 292 aa11.72□□□□□ -0.53
CCDC88A-202ENST00000336838 DHX32Q7L7V1 743 aaKnown RBP11.72□□□□□ -0.53
CCDC88A-202ENST00000336838 TM6SF1Q9BZW5 370 aa11.72□□□□□ -0.53
CCDC88A-202ENST00000336838 SWAP70Q9UH65 585 aa11.72□□□□□ -0.53
CCDC88A-202ENST00000336838 NEO1Q92859 1461 aa11.72□□□□□ -0.53
CCDC88A-202ENST00000336838 MBD5Q9P267 1494 aa11.72□□□□□ -0.53
CCDC88A-202ENST00000336838 PI4KAP2A4QPH2 592 aa11.72□□□□□ -0.53
CCDC88A-202ENST00000336838 ZNF500O60304 480 aaPredicted RBP11.72□□□□□ -0.53
CCDC88A-202ENST00000336838 AKAP4Q5JQC9 854 aa11.72□□□□□ -0.53
CCDC88A-202ENST00000336838 PI4KAP1Q8N8J0 262 aa11.72□□□□□ -0.53
CCDC88A-202ENST00000336838 JAKMIP2Q96AA8 810 aa11.72□□□□□ -0.53
CCDC88A-202ENST00000336838 FERMT1Q9BQL6 677 aa11.72□□□□□ -0.53
CCDC88A-202ENST00000336838 ARAP3Q8WWN8 1544 aa11.71□□□□□ -0.53
CCDC88A-202ENST00000336838 DZIP1Q86YF9 867 aaKnown RBP11.71□□□□□ -0.53
CCDC88A-202ENST00000336838 SREK1Q8WXA9 508 aaKnown RBP11.71□□□□□ -0.53
CCDC88A-202ENST00000336838 NAP1L3Q99457 506 aaPredicted RBP11.71□□□□□ -0.53
CCDC88A-202ENST00000336838 WTAPQ15007 396 aa11.71□□□□□ -0.53
CCDC88A-202ENST00000336838 DACT1Q9NYF0 836 aa11.71□□□□□ -0.53
CCDC88A-202ENST00000336838 EBAG9O00559 213 aa11.71□□□□□ -0.54
CCDC88A-202ENST00000336838 SEPT11Q9NVA2 429 aaKnown RBP11.71□□□□□ -0.54
CCDC88A-202ENST00000336838 TMOD2Q9NZR1 351 aa11.71□□□□□ -0.54
CCDC88A-202ENST00000336838 NLRP5P59047 1200 aa11.71□□□□□ -0.54
CCDC88A-202ENST00000336838 CCDC50Q8IVM0 306 aa11.71□□□□□ -0.54
CCDC88A-202ENST00000336838 ZHX3Q9H4I2 956 aa11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms