RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 ANKIB1Q9P2G1 1089 aa22.67■■□□□ 1.22
HDDC3-201ENST00000330334 GGA1Q9UJY5 639 aa22.67■■□□□ 1.22
HDDC3-201ENST00000330334 RIMBP2O15034 1052 aa22.66■■□□□ 1.22
HDDC3-201ENST00000330334 IFFO2Q5TF58 517 aa22.66■■□□□ 1.22
HDDC3-201ENST00000330334 BSDC1Q9NW68 430 aaPredicted RBP22.66■■□□□ 1.22
HDDC3-201ENST00000330334 CACNA1FO60840 1977 aa22.66■■□□□ 1.22
HDDC3-201ENST00000330334 ZNF521Q96K83 1311 aa22.65■■□□□ 1.22
HDDC3-201ENST00000330334 RPS12P25398 132 aaKnown RBP22.65■■□□□ 1.22
HDDC3-201ENST00000330334 UBE3BQ7Z3V4 1068 aa22.65■■□□□ 1.22
HDDC3-201ENST00000330334 CCDC85AQ96PX6 553 aaPredicted RBP22.65■■□□□ 1.22
HDDC3-201ENST00000330334 DBNDD1Q9H9R9 158 aa22.65■■□□□ 1.22
HDDC3-201ENST00000330334 MKRN1Q9UHC7 482 aaKnown RBP22.65■■□□□ 1.22
HDDC3-201ENST00000330334 CNOT7Q9UIV1 285 aaKnown RBP22.65■■□□□ 1.22
HDDC3-201ENST00000330334 XDHP47989 1333 aa22.64■■□□□ 1.22
HDDC3-201ENST00000330334 H7C1D1 291 aa22.64■■□□□ 1.21
HDDC3-201ENST00000330334 PSMD14O00487 310 aa22.64■■□□□ 1.21
HDDC3-201ENST00000330334 ECE2O60344 883 aa22.64■■□□□ 1.21
HDDC3-201ENST00000330334 UFL1O94874 794 aa22.64■■□□□ 1.21
HDDC3-201ENST00000330334 CASP7P55210 303 aa22.64■■□□□ 1.21
HDDC3-201ENST00000330334 GREM2Q9H772 168 aa22.64■■□□□ 1.21
HDDC3-201ENST00000330334 RASSF10A6NK89 507 aa22.63■■□□□ 1.21
HDDC3-201ENST00000330334 ATP2B4P23634 1241 aa22.63■■□□□ 1.21
HDDC3-201ENST00000330334 CSF1RP07333 972 aa22.62■■□□□ 1.21
HDDC3-201ENST00000330334 HIRAP54198 1017 aaPredicted RBP22.62■■□□□ 1.21
HDDC3-201ENST00000330334 DOK7Q18PE1 504 aa22.62■■□□□ 1.21
HDDC3-201ENST00000330334 MINPP1Q9UNW1 487 aa22.62■■□□□ 1.21
HDDC3-201ENST00000330334 VIL1P09327 827 aaKnown RBP22.61■■□□□ 1.21
HDDC3-201ENST00000330334 MICALL2Q8IY33 904 aa22.61■■□□□ 1.21
HDDC3-201ENST00000330334 ZBTB12Q9Y330 459 aaPredicted RBP22.61■■□□□ 1.21
HDDC3-201ENST00000330334 HSPA1AP0DMV8 641 aaKnown RBP22.6■■□□□ 1.21
HDDC3-201ENST00000330334 HSPA1BP0DMV9 641 aaKnown RBP22.6■■□□□ 1.21
HDDC3-201ENST00000330334 DEFB115Q30KQ5 88 aa22.6■■□□□ 1.21
HDDC3-201ENST00000330334 BEND3Q5T5X7 828 aa22.6■■□□□ 1.21
HDDC3-201ENST00000330334 GPR101Q96P66 508 aaPredicted RBP22.6■■□□□ 1.21
HDDC3-201ENST00000330334 KCNQ5Q9NR82 932 aa22.6■■□□□ 1.21
HDDC3-201ENST00000330334 G3V3G9 751 aa22.59■■□□□ 1.21
HDDC3-201ENST00000330334 VEGFBP49765 207 aa22.59■■□□□ 1.21
HDDC3-201ENST00000330334 DCAF8Q5TAQ9 597 aa22.59■■□□□ 1.21
HDDC3-201ENST00000330334 CST9Q5W186 159 aa22.59■■□□□ 1.21
HDDC3-201ENST00000330334 IGHMBP2P38935 993 aaKnown RBP22.58■■□□□ 1.21
HDDC3-201ENST00000330334 CDC37L1Q7L3B6 337 aa22.58■■□□□ 1.21
HDDC3-201ENST00000330334 PODNQ7Z5L7 613 aa22.58■■□□□ 1.21
HDDC3-201ENST00000330334 TRPM4Q8TD43 1214 aa22.58■■□□□ 1.21
HDDC3-201ENST00000330334 ZNF609O15014 1411 aa22.57■■□□□ 1.2
HDDC3-201ENST00000330334 TRAF5O00463 557 aa22.57■■□□□ 1.2
HDDC3-201ENST00000330334 ITGA6P23229 1130 aa22.57■■□□□ 1.2
HDDC3-201ENST00000330334 ABT1Q9ULW3 272 aaKnown RBP22.57■■□□□ 1.2
HDDC3-201ENST00000330334 SHTN1A0MZ66 631 aa22.56■■□□□ 1.2
HDDC3-201ENST00000330334 F6X3S4 739 aa22.56■■□□□ 1.2
HDDC3-201ENST00000330334 AGBL3Q8NEM8 1001 aa22.56■■□□□ 1.2
HDDC3-201ENST00000330334 LEMD3Q9Y2U8 911 aa22.56■■□□□ 1.2
HDDC3-201ENST00000330334 MYH3P11055 1940 aa22.56■■□□□ 1.2
HDDC3-201ENST00000330334 MED23Q9ULK4 1368 aa22.55■■□□□ 1.2
HDDC3-201ENST00000330334 CCT4P50991 539 aaKnown RBP22.55■■□□□ 1.2
HDDC3-201ENST00000330334 FMR1Q06787 632 aaKnown RBP eCLIP22.55■■□□□ 1.2
HDDC3-201ENST00000330334 SAMD7Q7Z3H4 446 aa22.55■■□□□ 1.2
HDDC3-201ENST00000330334 ANKRD2Q9GZV1 360 aa22.55■■□□□ 1.2
HDDC3-201ENST00000330334 E9PSI1 815 aa22.54■■□□□ 1.2
HDDC3-201ENST00000330334 ALDH1L1O75891 902 aa22.54■■□□□ 1.2
HDDC3-201ENST00000330334 FOXO4P98177 505 aa22.54■■□□□ 1.2
HDDC3-201ENST00000330334 FAM161AQ3B820 660 aa22.54■■□□□ 1.2
HDDC3-201ENST00000330334 COL13A1Q5TAT6 717 aaPredicted RBP22.54■■□□□ 1.2
HDDC3-201ENST00000330334 RSBN1LQ6PCB5 846 aaPredicted RBP22.54■■□□□ 1.2
HDDC3-201ENST00000330334 MPHOSPH8Q99549 860 aa22.54■■□□□ 1.2
HDDC3-201ENST00000330334 GLIS2Q9BZE0 524 aaPredicted RBP22.54■■□□□ 1.2
HDDC3-201ENST00000330334 TLL2Q9Y6L7 1015 aa22.54■■□□□ 1.2
HDDC3-201ENST00000330334 ZNF280AP59817 542 aaPredicted RBP22.53■■□□□ 1.2
HDDC3-201ENST00000330334 WDR33Q9C0J8 1336 aaKnown RBP22.53■■□□□ 1.2
HDDC3-201ENST00000330334 ANKRD18BA2A2Z9 1011 aa22.52■■□□□ 1.2
HDDC3-201ENST00000330334 USP17L3A6NCW0 530 aa22.52■■□□□ 1.2
HDDC3-201ENST00000330334 USP17L4A6NCW7 530 aa22.52■■□□□ 1.2
HDDC3-201ENST00000330334 GRM8O00222 908 aa22.52■■□□□ 1.2
HDDC3-201ENST00000330334 USP17L1Q7RTZ2 530 aa22.52■■□□□ 1.2
HDDC3-201ENST00000330334 HHIPL1Q96JK4 782 aa22.52■■□□□ 1.2
HDDC3-201ENST00000330334 GMLQ99445 158 aa22.52■■□□□ 1.2
HDDC3-201ENST00000330334 SCN9AQ15858 1988 aa22.51■■□□□ 1.19
HDDC3-201ENST00000330334 WTIPA6NIX2 430 aaPredicted RBP22.51■■□□□ 1.19
HDDC3-201ENST00000330334 CELF2O95319 508 aaKnown RBP22.51■■□□□ 1.19
HDDC3-201ENST00000330334 EGFRP00533 1210 aa22.51■■□□□ 1.19
HDDC3-201ENST00000330334 ECE1P42892 770 aa22.51■■□□□ 1.19
HDDC3-201ENST00000330334 TBC1D10BQ4KMP7 808 aaPredicted RBP22.51■■□□□ 1.19
HDDC3-201ENST00000330334 SAPCD2Q86UD0 394 aa22.51■■□□□ 1.19
HDDC3-201ENST00000330334 COA1Q9GZY4 146 aa22.51■■□□□ 1.19
HDDC3-201ENST00000330334 WBP1LQ9NX94 342 aa22.51■■□□□ 1.19
HDDC3-201ENST00000330334 SLFN5Q08AF3 891 aa22.5■■□□□ 1.19
HDDC3-201ENST00000330334 IFIT5Q13325 482 aaKnown RBP22.5■■□□□ 1.19
HDDC3-201ENST00000330334 SRCIN1Q9C0H9 1055 aa22.5■■□□□ 1.19
HDDC3-201ENST00000330334 ZNF804BA4D1E1 1349 aa22.5■■□□□ 1.19
HDDC3-201ENST00000330334 TRPM7Q96QT4 1865 aa22.49■■□□□ 1.19
HDDC3-201ENST00000330334 CCER2I3L3R5 266 aa22.49■■□□□ 1.19
HDDC3-201ENST00000330334 MMP14P50281 582 aa22.49■■□□□ 1.19
HDDC3-201ENST00000330334 MAP2K1Q02750 393 aaPredicted RBP22.49■■□□□ 1.19
HDDC3-201ENST00000330334 KIF4BQ2VIQ3 1234 aa22.49■■□□□ 1.19
HDDC3-201ENST00000330334 USP48Q86UV5 1035 aa22.49■■□□□ 1.19
HDDC3-201ENST00000330334 DCPSQ96C86 337 aaKnown RBP22.49■■□□□ 1.19
HDDC3-201ENST00000330334 C9orf78Q9NZ63 289 aaPredicted RBP22.49■■□□□ 1.19
HDDC3-201ENST00000330334 USP17L8P0C7I0 530 aa22.48■■□□□ 1.19
HDDC3-201ENST00000330334 CHRNDQ07001 517 aa22.48■■□□□ 1.19
HDDC3-201ENST00000330334 RBM26Q5T8P6 1007 aaKnown RBP22.48■■□□□ 1.19
HDDC3-201ENST00000330334 STRIP1Q5VSL9 837 aa22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms