RNA–Protein interactions for RNA: ENST00000319980.10

IFT88-201, Transcript of intraflagellar transport 88, humanhuman

TSL 1 (best) BASIC

Gene IFT88, Length 3,091 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT88-201ENST00000319980 BRD1O95696 1058 aa9.07□□□□□ -0.96
IFT88-201ENST00000319980 CSF1RP07333 972 aa9.07□□□□□ -0.96
IFT88-201ENST00000319980 IFIT1P09914 478 aaKnown RBP9.07□□□□□ -0.96
IFT88-201ENST00000319980 ATP6V1AP38606 617 aa9.07□□□□□ -0.96
IFT88-201ENST00000319980 IL6STP40189 918 aaPredicted RBP9.07□□□□□ -0.96
IFT88-201ENST00000319980 COL9A3Q14050 684 aaPredicted RBP9.07□□□□□ -0.96
IFT88-201ENST00000319980 SLFNL1Q499Z3 407 aa9.07□□□□□ -0.96
IFT88-201ENST00000319980 GORABQ5T7V8 394 aa9.07□□□□□ -0.96
IFT88-201ENST00000319980 PAG1Q9NWQ8 432 aa9.07□□□□□ -0.96
IFT88-201ENST00000319980 TAF6LQ9Y6J9 622 aa9.07□□□□□ -0.96
IFT88-201ENST00000319980 NCLP19338 710 aaKnown RBP9.07□□□□□ -0.96
IFT88-201ENST00000319980 PSMA5P28066 241 aa9.07□□□□□ -0.96
IFT88-201ENST00000319980 FOXD4L6Q3SYB3 417 aaPredicted RBP9.07□□□□□ -0.96
IFT88-201ENST00000319980 MCMDC2Q4G0Z9 681 aa9.07□□□□□ -0.96
IFT88-201ENST00000319980 L1TD1Q5T7N2 865 aaKnown RBP9.07□□□□□ -0.96
IFT88-201ENST00000319980 FOXD4L3Q6VB84 417 aaPredicted RBP9.07□□□□□ -0.96
IFT88-201ENST00000319980 UPF1Q92900 1129 aaKnown RBP eCLIP9.07□□□□□ -0.96
IFT88-201ENST00000319980 PLA2G12BQ9BX93 195 aa9.07□□□□□ -0.96
IFT88-201ENST00000319980 GREM2Q9H772 168 aa9.07□□□□□ -0.96
IFT88-201ENST00000319980 IRS4O14654 1257 aaPredicted RBP9.06□□□□□ -0.96
IFT88-201ENST00000319980 DTNBO60941 627 aa9.06□□□□□ -0.96
IFT88-201ENST00000319980 LARGE1O95461 756 aa9.06□□□□□ -0.96
IFT88-201ENST00000319980 ITGA6P23229 1130 aa9.06□□□□□ -0.96
IFT88-201ENST00000319980 FKBP4Q02790 459 aaKnown RBP eCLIP9.06□□□□□ -0.96
IFT88-201ENST00000319980 KLHL40Q2TBA0 621 aa9.06□□□□□ -0.96
IFT88-201ENST00000319980 LDHAL6AQ6ZMR3 332 aa9.06□□□□□ -0.96
IFT88-201ENST00000319980 TTLL11Q8NHH1 800 aa9.06□□□□□ -0.96
IFT88-201ENST00000319980 TCEANC2Q96MN5 208 aa9.06□□□□□ -0.96
IFT88-201ENST00000319980 LMBRD1Q9NUN5 540 aa9.06□□□□□ -0.96
IFT88-201ENST00000319980 FSD2A1L4K1 749 aa9.06□□□□□ -0.96
IFT88-201ENST00000319980 CCDC158Q5M9N0 1113 aa9.06□□□□□ -0.96
IFT88-201ENST00000319980 CCDC125Q86Z20 511 aa9.06□□□□□ -0.96
IFT88-201ENST00000319980 NGLY1Q96IV0 654 aa9.06□□□□□ -0.96
IFT88-201ENST00000319980 AKAP2Q9Y2D5 859 aa9.06□□□□□ -0.96
IFT88-201ENST00000319980 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.06□□□□□ -0.96
IFT88-201ENST00000319980 SPATA31A5Q5VU36 1347 aa9.06□□□□□ -0.96
IFT88-201ENST00000319980 SPATA31A7Q8IWB4 1347 aa9.06□□□□□ -0.96
IFT88-201ENST00000319980 NUP188Q5SRE5 1749 aa9.06□□□□□ -0.96
IFT88-201ENST00000319980 LOC102724428A0A0B4J2F2 783 aa9.06□□□□□ -0.96
IFT88-201ENST00000319980 ERVV-1B6SEH8 477 aa9.06□□□□□ -0.96
IFT88-201ENST00000319980 ADORA1P30542 326 aa9.06□□□□□ -0.96
IFT88-201ENST00000319980 SIK1P57059 783 aa9.06□□□□□ -0.96
IFT88-201ENST00000319980 BLOC1S2Q6QNY1 142 aa9.06□□□□□ -0.96
IFT88-201ENST00000319980 CCDC83Q8IWF9 413 aa9.06□□□□□ -0.96
IFT88-201ENST00000319980 ZNF609O15014 1411 aa9.05□□□□□ -0.96
IFT88-201ENST00000319980 FAM177BA6PVY3 158 aa9.05□□□□□ -0.96
IFT88-201ENST00000319980 XRCC6P12956 609 aaKnown RBP eCLIP9.05□□□□□ -0.96
IFT88-201ENST00000319980 CTSWP56202 376 aa9.05□□□□□ -0.96
IFT88-201ENST00000319980 XAGE2Q96GT9 111 aa9.05□□□□□ -0.96
IFT88-201ENST00000319980 SMC3Q9UQE7 1217 aa9.05□□□□□ -0.96
IFT88-201ENST00000319980 TNS1Q9HBL0 1735 aaKnown RBP9.05□□□□□ -0.96
IFT88-201ENST00000319980 UBN2Q6ZU65 1347 aa9.05□□□□□ -0.96
IFT88-201ENST00000319980 CDHR2Q9BYE9 1310 aa9.05□□□□□ -0.96
IFT88-201ENST00000319980 KCNQ2O43526 872 aa9.05□□□□□ -0.96
IFT88-201ENST00000319980 CRKLP46109 303 aaKnown RBP9.05□□□□□ -0.96
IFT88-201ENST00000319980 EIF5P55010 431 aaKnown RBP9.05□□□□□ -0.96
IFT88-201ENST00000319980 ME3Q16798 604 aa9.05□□□□□ -0.96
IFT88-201ENST00000319980 METTL24Q5JXM2 366 aa9.05□□□□□ -0.96
IFT88-201ENST00000319980 TTC39AQ5SRH9 613 aa9.05□□□□□ -0.96
IFT88-201ENST00000319980 USPL1Q5W0Q7 1092 aa9.05□□□□□ -0.96
IFT88-201ENST00000319980 INTS5Q6P9B9 1019 aaKnown RBP9.05□□□□□ -0.96
IFT88-201ENST00000319980 CNNM1Q9NRU3 951 aa9.05□□□□□ -0.96
IFT88-201ENST00000319980 CCDC87Q9NVE4 849 aa9.05□□□□□ -0.96
IFT88-201ENST00000319980 HMG20BQ9P0W2 317 aa9.05□□□□□ -0.96
IFT88-201ENST00000319980 ANKRD18BA2A2Z9 1011 aa9.04□□□□□ -0.96
IFT88-201ENST00000319980 FAM98CQ17RN3 349 aaKnown RBP9.04□□□□□ -0.96
IFT88-201ENST00000319980 NECAB1Q8N987 351 aa9.04□□□□□ -0.96
IFT88-201ENST00000319980 QTRT2Q9H974 415 aaKnown RBP9.04□□□□□ -0.96
IFT88-201ENST00000319980 TPCN1Q9ULQ1 816 aa9.04□□□□□ -0.96
IFT88-201ENST00000319980 RIPOR2Q9Y4F9 1068 aa9.04□□□□□ -0.96
IFT88-201ENST00000319980 WDR33Q9C0J8 1336 aaKnown RBP9.04□□□□□ -0.96
IFT88-201ENST00000319980 LRP5O75197 1615 aa9.04□□□□□ -0.96
IFT88-201ENST00000319980 TJP1Q07157 1748 aa9.04□□□□□ -0.96
IFT88-201ENST00000319980 RFX7Q2KHR2 1363 aa9.04□□□□□ -0.96
IFT88-201ENST00000319980 RPAP1Q9BWH6 1393 aaPredicted RBP9.04□□□□□ -0.96
IFT88-201ENST00000319980 ITPK1Q13572 414 aa9.04□□□□□ -0.96
IFT88-201ENST00000319980 VPS72Q15906 364 aa9.04□□□□□ -0.96
IFT88-201ENST00000319980 CAVIN1Q6NZI2 390 aaKnown RBP9.04□□□□□ -0.96
IFT88-201ENST00000319980 GAS2L3Q86XJ1 694 aa9.04□□□□□ -0.96
IFT88-201ENST00000319980 PIAS4Q8N2W9 510 aaPredicted RBP9.04□□□□□ -0.96
IFT88-201ENST00000319980 ZSCAN31Q96LW9 406 aaPredicted RBP9.04□□□□□ -0.96
IFT88-201ENST00000319980 SH2B1Q9NRF2 756 aaPredicted RBP9.04□□□□□ -0.96
IFT88-201ENST00000319980 ITGB4P16144 1822 aa9.03□□□□□ -0.96
IFT88-201ENST00000319980 PDE8AO60658 829 aa9.03□□□□□ -0.96
IFT88-201ENST00000319980 CYP21A2P08686 494 aa9.03□□□□□ -0.96
IFT88-201ENST00000319980 SYT1P21579 422 aa9.03□□□□□ -0.96
IFT88-201ENST00000319980 RPS6KB1P23443 525 aa9.03□□□□□ -0.96
IFT88-201ENST00000319980 TSGA10IPQ3SY00 556 aa9.03□□□□□ -0.96
IFT88-201ENST00000319980 BARGINQ6ZT62 677 aa9.03□□□□□ -0.96
IFT88-201ENST00000319980 ZNF34Q8IZ26 560 aa9.03□□□□□ -0.96
IFT88-201ENST00000319980 C8orf37Q96NL8 207 aa9.03□□□□□ -0.96
IFT88-201ENST00000319980 U3KPZ7 1027 aaPredicted RBP9.03□□□□□ -0.96
IFT88-201ENST00000319980 HCLS1P14317 486 aaPredicted RBP9.03□□□□□ -0.96
IFT88-201ENST00000319980 SCARF1Q14162 830 aa9.03□□□□□ -0.96
IFT88-201ENST00000319980 KRT32Q14532 448 aa9.03□□□□□ -0.96
IFT88-201ENST00000319980 ATP2B3Q16720 1220 aa9.03□□□□□ -0.96
IFT88-201ENST00000319980 NEK1Q96PY6 1258 aa9.03□□□□□ -0.96
IFT88-201ENST00000319980 HELLSQ9NRZ9 838 aa9.03□□□□□ -0.96
IFT88-201ENST00000319980 SH3TC1Q8TE82 1336 aa9.03□□□□□ -0.96
IFT88-201ENST00000319980 PALLDQ8WX93 1383 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms