RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 MYH16Q9H6N6 1097 aa24.95■■□□□ 1.58
LIME1-201ENST00000309546 GGA1Q9UJY5 639 aa24.95■■□□□ 1.58
LIME1-201ENST00000309546 TRPM7Q96QT4 1865 aa24.94■■□□□ 1.58
LIME1-201ENST00000309546 IFFO2Q5TF58 517 aa24.94■■□□□ 1.58
LIME1-201ENST00000309546 DNAAF4Q8WXU2 420 aa24.94■■□□□ 1.58
LIME1-201ENST00000309546 CDC5LQ99459 802 aaKnown RBP24.94■■□□□ 1.58
LIME1-201ENST00000309546 PODXL2Q9NZ53 605 aa24.94■■□□□ 1.58
LIME1-201ENST00000309546 ZBTB12Q9Y330 459 aaPredicted RBP24.94■■□□□ 1.58
LIME1-201ENST00000309546 SHTN1A0MZ66 631 aa24.93■■□□□ 1.58
LIME1-201ENST00000309546 G3V3G9 751 aa24.93■■□□□ 1.58
LIME1-201ENST00000309546 PSMD14O00487 310 aa24.93■■□□□ 1.58
LIME1-201ENST00000309546 FMR1Q06787 632 aaKnown RBP eCLIP24.93■■□□□ 1.58
LIME1-201ENST00000309546 DCAF8Q5TAQ9 597 aa24.93■■□□□ 1.58
LIME1-201ENST00000309546 ZC3H12CQ9C0D7 883 aaKnown RBP24.93■■□□□ 1.58
LIME1-201ENST00000309546 ABT1Q9ULW3 272 aaKnown RBP24.93■■□□□ 1.58
LIME1-201ENST00000309546 GCKRQ14397 625 aa24.92■■□□□ 1.58
LIME1-201ENST00000309546 MICALL2Q8IY33 904 aa24.92■■□□□ 1.58
LIME1-201ENST00000309546 TTLL11Q8NHH1 800 aa24.92■■□□□ 1.58
LIME1-201ENST00000309546 GREM2Q9H772 168 aa24.92■■□□□ 1.58
LIME1-201ENST00000309546 CNOT7Q9UIV1 285 aaKnown RBP24.92■■□□□ 1.58
LIME1-201ENST00000309546 SCN9AQ15858 1988 aa24.92■■□□□ 1.58
LIME1-201ENST00000309546 TRAF5O00463 557 aa24.91■■□□□ 1.58
LIME1-201ENST00000309546 TRPM4Q8TD43 1214 aa24.91■■□□□ 1.58
LIME1-201ENST00000309546 XDHP47989 1333 aa24.9■■□□□ 1.58
LIME1-201ENST00000309546 PCNTO95613 3336 aa24.9■■□□□ 1.58
LIME1-201ENST00000309546 H7C1D1 291 aa24.9■■□□□ 1.58
LIME1-201ENST00000309546 H7C1W4 665 aa24.9■■□□□ 1.58
LIME1-201ENST00000309546 KCNQ5Q9NR82 932 aa24.9■■□□□ 1.58
LIME1-201ENST00000309546 RTL9Q8NET4 1388 aa24.9■■□□□ 1.58
LIME1-201ENST00000309546 VEGFBP49765 207 aa24.89■■□□□ 1.58
LIME1-201ENST00000309546 LINS1Q8NG48 757 aa24.89■■□□□ 1.58
LIME1-201ENST00000309546 F6X3S4 739 aa24.88■■□□□ 1.57
LIME1-201ENST00000309546 HIRAP54198 1017 aaPredicted RBP24.88■■□□□ 1.57
LIME1-201ENST00000309546 DEFB115Q30KQ5 88 aa24.87■■□□□ 1.57
LIME1-201ENST00000309546 GLIS2Q9BZE0 524 aaPredicted RBP24.87■■□□□ 1.57
LIME1-201ENST00000309546 PSME4Q14997 1843 aa24.86■■□□□ 1.57
LIME1-201ENST00000309546 ATP2B4P23634 1241 aa24.86■■□□□ 1.57
LIME1-201ENST00000309546 IGHMBP2P38935 993 aaKnown RBP24.86■■□□□ 1.57
LIME1-201ENST00000309546 FAM161AQ3B820 660 aa24.86■■□□□ 1.57
LIME1-201ENST00000309546 COL13A1Q5TAT6 717 aaPredicted RBP24.86■■□□□ 1.57
LIME1-201ENST00000309546 SAMD7Q7Z3H4 446 aa24.86■■□□□ 1.57
LIME1-201ENST00000309546 DPF2Q92785 391 aa24.86■■□□□ 1.57
LIME1-201ENST00000309546 BSDC1Q9NW68 430 aaPredicted RBP24.86■■□□□ 1.57
LIME1-201ENST00000309546 RASSF10A6NK89 507 aa24.85■■□□□ 1.57
LIME1-201ENST00000309546 RPS12P25398 132 aaKnown RBP24.85■■□□□ 1.57
LIME1-201ENST00000309546 CASP7P55210 303 aa24.85■■□□□ 1.57
LIME1-201ENST00000309546 TBC1D10BQ4KMP7 808 aaPredicted RBP24.85■■□□□ 1.57
LIME1-201ENST00000309546 PAXIP1Q6ZW49 1069 aaPredicted RBP24.85■■□□□ 1.57
LIME1-201ENST00000309546 PLA2G12BQ9BX93 195 aa24.85■■□□□ 1.57
LIME1-201ENST00000309546 MINPP1Q9UNW1 487 aa24.85■■□□□ 1.57
LIME1-201ENST00000309546 ITGA6P23229 1130 aa24.84■■□□□ 1.57
LIME1-201ENST00000309546 ZC3H15Q8WU90 426 aaKnown RBP24.84■■□□□ 1.57
LIME1-201ENST00000309546 RBM26Q5T8P6 1007 aaKnown RBP24.83■■□□□ 1.57
LIME1-201ENST00000309546 CST9Q5W186 159 aa24.83■■□□□ 1.57
LIME1-201ENST00000309546 ZNF408Q9H9D4 720 aa24.83■■□□□ 1.57
LIME1-201ENST00000309546 PGAP2Q9UHJ9 254 aa24.83■■□□□ 1.57
LIME1-201ENST00000309546 ZNF521Q96K83 1311 aa24.83■■□□□ 1.56
LIME1-201ENST00000309546 WTIPA6NIX2 430 aaPredicted RBP24.82■■□□□ 1.56
LIME1-201ENST00000309546 CELF2O95319 508 aaKnown RBP24.82■■□□□ 1.56
LIME1-201ENST00000309546 GRM1Q13255 1194 aa24.82■■□□□ 1.56
LIME1-201ENST00000309546 BEND3Q5T5X7 828 aa24.82■■□□□ 1.56
LIME1-201ENST00000309546 EGFRP00533 1210 aa24.81■■□□□ 1.56
LIME1-201ENST00000309546 VIL1P09327 827 aaKnown RBP24.81■■□□□ 1.56
LIME1-201ENST00000309546 CCT4P50991 539 aaKnown RBP24.81■■□□□ 1.56
LIME1-201ENST00000309546 CDC37L1Q7L3B6 337 aa24.81■■□□□ 1.56
LIME1-201ENST00000309546 MPHOSPH8Q99549 860 aa24.81■■□□□ 1.56
LIME1-201ENST00000309546 CHMP3Q9Y3E7 222 aa24.81■■□□□ 1.56
LIME1-201ENST00000309546 WDR33Q9C0J8 1336 aaKnown RBP24.81■■□□□ 1.56
LIME1-201ENST00000309546 MED23Q9ULK4 1368 aa24.8■■□□□ 1.56
LIME1-201ENST00000309546 POLR2AP24928 1970 aaKnown RBP24.8■■□□□ 1.56
LIME1-201ENST00000309546 CSF1RP07333 972 aa24.79■■□□□ 1.56
LIME1-201ENST00000309546 KIF4BQ2VIQ3 1234 aa24.79■■□□□ 1.56
LIME1-201ENST00000309546 SLC4A10Q6U841 1118 aa24.79■■□□□ 1.56
LIME1-201ENST00000309546 AIDAQ96BJ3 306 aa24.79■■□□□ 1.56
LIME1-201ENST00000309546 TLL2Q9Y6L7 1015 aa24.79■■□□□ 1.56
LIME1-201ENST00000309546 ANKRD18BA2A2Z9 1011 aa24.78■■□□□ 1.56
LIME1-201ENST00000309546 RSBN1LQ6PCB5 846 aaPredicted RBP24.78■■□□□ 1.56
LIME1-201ENST00000309546 USP48Q86UV5 1035 aa24.78■■□□□ 1.56
LIME1-201ENST00000309546 FBXW7Q969H0 707 aa24.78■■□□□ 1.56
LIME1-201ENST00000309546 CAPNS2Q96L46 248 aa24.78■■□□□ 1.56
LIME1-201ENST00000309546 FOXN1O15353 648 aa24.77■■□□□ 1.56
LIME1-201ENST00000309546 CYP4F22Q6NT55 531 aa24.77■■□□□ 1.56
LIME1-201ENST00000309546 PODNQ7Z5L7 613 aa24.77■■□□□ 1.56
LIME1-201ENST00000309546 A0A1B0GUL6 1792 aa24.77■■□□□ 1.56
LIME1-201ENST00000309546 USP17L3A6NCW0 530 aa24.76■■□□□ 1.55
LIME1-201ENST00000309546 USP17L4A6NCW7 530 aa24.76■■□□□ 1.55
LIME1-201ENST00000309546 ECE1P42892 770 aa24.76■■□□□ 1.55
LIME1-201ENST00000309546 USP17L1Q7RTZ2 530 aa24.76■■□□□ 1.55
LIME1-201ENST00000309546 TNS4Q8IZW8 715 aa24.76■■□□□ 1.55
LIME1-201ENST00000309546 AGBL3Q8NEM8 1001 aa24.76■■□□□ 1.55
LIME1-201ENST00000309546 DCPSQ96C86 337 aaKnown RBP24.76■■□□□ 1.55
LIME1-201ENST00000309546 ANKRD2Q9GZV1 360 aa24.76■■□□□ 1.55
LIME1-201ENST00000309546 LEMD3Q9Y2U8 911 aa24.76■■□□□ 1.55
LIME1-201ENST00000309546 THSD7BQ9C0I4 1608 aa24.75■■□□□ 1.55
LIME1-201ENST00000309546 GRM8O00222 908 aa24.75■■□□□ 1.55
LIME1-201ENST00000309546 KCNJ4P48050 445 aa24.75■■□□□ 1.55
LIME1-201ENST00000309546 FOXO4P98177 505 aa24.75■■□□□ 1.55
LIME1-201ENST00000309546 IFIT5Q13325 482 aaKnown RBP24.75■■□□□ 1.55
LIME1-201ENST00000309546 DLK2Q6UY11 383 aa24.75■■□□□ 1.55
LIME1-201ENST00000309546 KRT26Q7Z3Y9 468 aa24.75■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms