RNA–Protein interactions for RNA: ENST00000301475.1

ZNF558-201, Transcript of zinc finger protein 558, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ZNF558, Length 3,014 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF558-201ENST00000301475 GPATCH3Q96I76 525 aa12.72□□□□□ -0.37
ZNF558-201ENST00000301475 ANO10Q9NW15 660 aa12.72□□□□□ -0.37
ZNF558-201ENST00000301475 TLR7Q9NYK1 1049 aaKnown RBP12.72□□□□□ -0.37
ZNF558-201ENST00000301475 JCADQ9P266 1359 aa12.72□□□□□ -0.37
ZNF558-201ENST00000301475 POLR3GO15318 223 aaPredicted RBP12.72□□□□□ -0.37
ZNF558-201ENST00000301475 GORABQ5T7V8 394 aa12.72□□□□□ -0.37
ZNF558-201ENST00000301475 CEP57L1Q8IYX8 460 aa12.72□□□□□ -0.37
ZNF558-201ENST00000301475 CHPF2Q9P2E5 772 aa12.72□□□□□ -0.37
ZNF558-201ENST00000301475 CFAP45Q9UL16 551 aa12.72□□□□□ -0.37
ZNF558-201ENST00000301475 SEC31AO94979 1220 aaKnown RBP12.72□□□□□ -0.37
ZNF558-201ENST00000301475 USP28Q96RU2 1077 aa12.72□□□□□ -0.37
ZNF558-201ENST00000301475 ORC3Q9UBD5 711 aaPredicted RBP12.72□□□□□ -0.37
ZNF558-201ENST00000301475 RCOR1Q9UKL0 485 aa12.72□□□□□ -0.37
ZNF558-201ENST00000301475 KINO60870 393 aaKnown RBP12.71□□□□□ -0.37
ZNF558-201ENST00000301475 ST5P78524 1137 aa12.71□□□□□ -0.37
ZNF558-201ENST00000301475 TMC6Q7Z403 805 aa12.71□□□□□ -0.37
ZNF558-201ENST00000301475 XPO4Q9C0E2 1151 aaKnown RBP12.71□□□□□ -0.37
ZNF558-201ENST00000301475 ZSCAN16Q9H4T2 348 aaPredicted RBP12.71□□□□□ -0.37
ZNF558-201ENST00000301475 COL15A1P39059 1388 aa12.71□□□□□ -0.37
ZNF558-201ENST00000301475 PSDA5PKW4 1024 aaPredicted RBP12.71□□□□□ -0.38
ZNF558-201ENST00000301475 CCDC73Q6ZRK6 1079 aa12.71□□□□□ -0.38
ZNF558-201ENST00000301475 EAF2Q96CJ1 260 aaPredicted RBP12.71□□□□□ -0.38
ZNF558-201ENST00000301475 ADAMTS13Q76LX8 1427 aa12.71□□□□□ -0.38
ZNF558-201ENST00000301475 FAM160A1Q05DH4 1040 aa12.7□□□□□ -0.38
ZNF558-201ENST00000301475 FSD1Q9BTV5 496 aa12.7□□□□□ -0.38
ZNF558-201ENST00000301475 CCDC8Q9H0W5 538 aaPredicted RBP12.7□□□□□ -0.38
ZNF558-201ENST00000301475 IMPACTQ9P2X3 320 aa12.7□□□□□ -0.38
ZNF558-201ENST00000301475 SASH3O75995 380 aa12.7□□□□□ -0.38
ZNF558-201ENST00000301475 SCRN1Q12765 414 aa12.7□□□□□ -0.38
ZNF558-201ENST00000301475 DPCR1Q3MIW9 517 aa12.7□□□□□ -0.38
ZNF558-201ENST00000301475 BOLA2Q9H3K6 86 aa12.7□□□□□ -0.38
ZNF558-201ENST00000301475 IFNKQ9P0W0 207 aa12.7□□□□□ -0.38
ZNF558-201ENST00000301475 NWD1Q149M9 1564 aa12.7□□□□□ -0.38
ZNF558-201ENST00000301475 HIP1O00291 1037 aa12.7□□□□□ -0.38
ZNF558-201ENST00000301475 SMC2O95347 1197 aa12.7□□□□□ -0.38
ZNF558-201ENST00000301475 SFPQP23246 707 aaKnown RBP eCLIP12.7□□□□□ -0.38
ZNF558-201ENST00000301475 TMCO3Q6UWJ1 677 aa12.7□□□□□ -0.38
ZNF558-201ENST00000301475 FSIP1Q8NA03 581 aa12.7□□□□□ -0.38
ZNF558-201ENST00000301475 CCDC150Q8NCX0 1101 aa12.7□□□□□ -0.38
ZNF558-201ENST00000301475 SMARCE1Q969G3 411 aa12.7□□□□□ -0.38
ZNF558-201ENST00000301475 LRRC2Q9BYS8 371 aa12.7□□□□□ -0.38
ZNF558-201ENST00000301475 UBXN6Q9BZV1 441 aa12.7□□□□□ -0.38
ZNF558-201ENST00000301475 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.7□□□□□ -0.38
ZNF558-201ENST00000301475 FER1L4A9Z1Z3 1794 aa12.69□□□□□ -0.38
ZNF558-201ENST00000301475 UBR1Q8IWV7 1749 aa12.69□□□□□ -0.38
ZNF558-201ENST00000301475 TADA3O75528 432 aa12.69□□□□□ -0.38
ZNF558-201ENST00000301475 SASH1O94885 1247 aa12.69□□□□□ -0.38
ZNF558-201ENST00000301475 TSGA10IPQ3SY00 556 aa12.69□□□□□ -0.38
ZNF558-201ENST00000301475 Q6ZUG5 572 aa12.69□□□□□ -0.38
ZNF558-201ENST00000301475 EDC3Q96F86 508 aaKnown RBP12.69□□□□□ -0.38
ZNF558-201ENST00000301475 EPC1Q9H2F5 836 aa12.69□□□□□ -0.38
ZNF558-201ENST00000301475 HMG20BQ9P0W2 317 aa12.69□□□□□ -0.38
ZNF558-201ENST00000301475 DNAI1Q9UI46 699 aa12.69□□□□□ -0.38
ZNF558-201ENST00000301475 TAF5LO75529 589 aa12.69□□□□□ -0.38
ZNF558-201ENST00000301475 KCNJ6P48051 423 aa12.69□□□□□ -0.38
ZNF558-201ENST00000301475 AMPHP49418 695 aa12.69□□□□□ -0.38
ZNF558-201ENST00000301475 ETF1P62495 437 aaKnown RBP12.69□□□□□ -0.38
ZNF558-201ENST00000301475 UBXN4Q92575 508 aa12.69□□□□□ -0.38
ZNF558-201ENST00000301475 ZCCHC17Q9NP64 241 aaKnown RBP12.69□□□□□ -0.38
ZNF558-201ENST00000301475 NEDD4P46934 1319 aa12.69□□□□□ -0.38
ZNF558-201ENST00000301475 PLEKHG3A1L390 1219 aa12.68□□□□□ -0.38
ZNF558-201ENST00000301475 ABCC6O95255 1503 aa12.68□□□□□ -0.38
ZNF558-201ENST00000301475 HSP90B1P14625 803 aaKnown RBP12.68□□□□□ -0.38
ZNF558-201ENST00000301475 KCNA6P17658 529 aa12.68□□□□□ -0.38
ZNF558-201ENST00000301475 SMARCC2Q8TAQ2 1214 aa12.68□□□□□ -0.38
ZNF558-201ENST00000301475 PPFIA3O75145 1194 aa12.68□□□□□ -0.38
ZNF558-201ENST00000301475 TBC1D8O95759 1140 aa12.68□□□□□ -0.38
ZNF558-201ENST00000301475 MUM1L1Q5H9M0 696 aa12.68□□□□□ -0.38
ZNF558-201ENST00000301475 NUTM2GQ5VZR2 741 aa12.68□□□□□ -0.38
ZNF558-201ENST00000301475 TRIM65Q6PJ69 517 aa12.68□□□□□ -0.38
ZNF558-201ENST00000301475 ILDR1Q86SU0 546 aaPredicted RBP12.68□□□□□ -0.38
ZNF558-201ENST00000301475 HOMER1Q86YM7 354 aa12.68□□□□□ -0.38
ZNF558-201ENST00000301475 ERC1Q8IUD2 1116 aa12.68□□□□□ -0.38
ZNF558-201ENST00000301475 NSUN7Q8NE18 718 aaKnown RBP12.68□□□□□ -0.38
ZNF558-201ENST00000301475 PLEKHG1Q9ULL1 1385 aa12.67□□□□□ -0.38
ZNF558-201ENST00000301475 PHLPP2Q6ZVD8 1323 aa12.67□□□□□ -0.38
ZNF558-201ENST00000301475 CHGBP05060 677 aa12.67□□□□□ -0.38
ZNF558-201ENST00000301475 FMR1NBQ8N0W7 255 aaPredicted RBP12.67□□□□□ -0.38
ZNF558-201ENST00000301475 NEK1Q96PY6 1258 aa12.67□□□□□ -0.38
ZNF558-201ENST00000301475 TSPYL1Q9H0U9 437 aa12.67□□□□□ -0.38
ZNF558-201ENST00000301475 ARGLU1Q9NWB6 273 aaPredicted RBP12.67□□□□□ -0.38
ZNF558-201ENST00000301475 CTDNEP1O95476 244 aa12.67□□□□□ -0.38
ZNF558-201ENST00000301475 ME1P48163 572 aa12.67□□□□□ -0.38
ZNF558-201ENST00000301475 TPM4P67936 248 aa12.67□□□□□ -0.38
ZNF558-201ENST00000301475 USPL1Q5W0Q7 1092 aa12.67□□□□□ -0.38
ZNF558-201ENST00000301475 SEC62Q99442 399 aaKnown RBP12.67□□□□□ -0.38
ZNF558-201ENST00000301475 CARD6Q9BX69 1037 aa12.67□□□□□ -0.38
ZNF558-201ENST00000301475 NAT10Q9H0A0 1025 aaKnown RBP12.67□□□□□ -0.38
ZNF558-201ENST00000301475 BABAM1Q9NWV8 329 aa12.67□□□□□ -0.38
ZNF558-201ENST00000301475 OAS2P29728 719 aaKnown RBP12.67□□□□□ -0.38
ZNF558-201ENST00000301475 EIF4A1P60842 406 aaKnown RBP12.67□□□□□ -0.38
ZNF558-201ENST00000301475 TEX35Q5T0J7 233 aa12.67□□□□□ -0.38
ZNF558-201ENST00000301475 KRBA2Q6ZNG9 492 aa12.67□□□□□ -0.38
ZNF558-201ENST00000301475 SIRT1Q96EB6 747 aa12.67□□□□□ -0.38
ZNF558-201ENST00000301475 KCNQ3O43525 872 aa12.66□□□□□ -0.38
ZNF558-201ENST00000301475 CWF19L2Q2TBE0 894 aaKnown RBP12.66□□□□□ -0.38
ZNF558-201ENST00000301475 NAA16Q6N069 864 aaPredicted RBP12.66□□□□□ -0.38
ZNF558-201ENST00000301475 TXLNBQ8N3L3 684 aa12.66□□□□□ -0.38
ZNF558-201ENST00000301475 PARP3Q9Y6F1 533 aa12.66□□□□□ -0.38
ZNF558-201ENST00000301475 LAMA4Q16363 1823 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms