RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 SSFA2P28290 1259 aa15.98■□□□□ 0.15
LDLR-201ENST00000252444 PRPF40BQ6NWY9 871 aaKnown RBP15.98■□□□□ 0.15
LDLR-201ENST00000252444 CLEC4GQ6UXB4 293 aa15.98■□□□□ 0.15
LDLR-201ENST00000252444 JDP2Q8WYK2 163 aa15.98■□□□□ 0.15
LDLR-201ENST00000252444 BMP2KQ9NSY1 1161 aaPredicted RBP15.98■□□□□ 0.15
LDLR-201ENST00000252444 H0YIN7 160 aa15.98■□□□□ 0.15
LDLR-201ENST00000252444 SMARCA5O60264 1052 aaPredicted RBP15.98■□□□□ 0.15
LDLR-201ENST00000252444 WWC2Q6AWC2 1192 aa15.98■□□□□ 0.15
LDLR-201ENST00000252444 KRT27Q7Z3Y8 459 aa15.98■□□□□ 0.15
LDLR-201ENST00000252444 CCP110O43303 1012 aa15.97■□□□□ 0.15
LDLR-201ENST00000252444 SSRP1Q08945 709 aaKnown RBP15.97■□□□□ 0.15
LDLR-201ENST00000252444 PPP2R5BQ15173 497 aa15.97■□□□□ 0.15
LDLR-201ENST00000252444 BICC1Q9H694 974 aaKnown RBP15.97■□□□□ 0.15
LDLR-201ENST00000252444 NEURL1BA8MQ27 555 aa15.97■□□□□ 0.15
LDLR-201ENST00000252444 BARGINQ6ZT62 677 aa15.97■□□□□ 0.15
LDLR-201ENST00000252444 DNAJC10Q8IXB1 793 aa15.97■□□□□ 0.15
LDLR-201ENST00000252444 GGA1Q9UJY5 639 aa15.97■□□□□ 0.15
LDLR-201ENST00000252444 B4DLN1 442 aa15.97■□□□□ 0.15
LDLR-201ENST00000252444 MRPL12P52815 198 aaKnown RBP15.97■□□□□ 0.15
LDLR-201ENST00000252444 CCDC148Q8NFR7 591 aa15.97■□□□□ 0.15
LDLR-201ENST00000252444 ESYT1Q9BSJ8 1104 aa15.97■□□□□ 0.15
LDLR-201ENST00000252444 LRRC27Q9C0I9 530 aa15.97■□□□□ 0.15
LDLR-201ENST00000252444 NF2P35240 595 aa15.97■□□□□ 0.15
LDLR-201ENST00000252444 VPS72Q15906 364 aa15.97■□□□□ 0.15
LDLR-201ENST00000252444 TBC1D9Q6ZT07 1266 aa15.97■□□□□ 0.15
LDLR-201ENST00000252444 NEK1Q96PY6 1258 aa15.97■□□□□ 0.15
LDLR-201ENST00000252444 SOS2Q07890 1332 aaPredicted RBP15.96■□□□□ 0.15
LDLR-201ENST00000252444 ATP2B4P23634 1241 aa15.96■□□□□ 0.15
LDLR-201ENST00000252444 DNAI2Q9GZS0 605 aa15.96■□□□□ 0.15
LDLR-201ENST00000252444 NRKQ7Z2Y5 1582 aa15.96■□□□□ 0.15
LDLR-201ENST00000252444 LOC102724428A0A0B4J2F2 783 aa15.96■□□□□ 0.15
LDLR-201ENST00000252444 MAGEB6P1A0A0J9YX57 407 aa15.96■□□□□ 0.15
LDLR-201ENST00000252444 PRKCSHP14314 528 aaPredicted RBP15.96■□□□□ 0.15
LDLR-201ENST00000252444 SIK1P57059 783 aa15.96■□□□□ 0.15
LDLR-201ENST00000252444 CCDC85AQ96PX6 553 aaPredicted RBP15.96■□□□□ 0.15
LDLR-201ENST00000252444 SNX21Q969T3 373 aa15.96■□□□□ 0.14
LDLR-201ENST00000252444 MAP4K4O95819 1239 aaPredicted RBP15.95■□□□□ 0.14
LDLR-201ENST00000252444 NUP133Q8WUM0 1156 aa15.95■□□□□ 0.14
LDLR-201ENST00000252444 TTC6Q86TZ1 520 aa15.95■□□□□ 0.14
LDLR-201ENST00000252444 CNKSR1Q969H4 720 aa15.95■□□□□ 0.14
LDLR-201ENST00000252444 KAT14Q9H8E8 782 aa15.95■□□□□ 0.14
LDLR-201ENST00000252444 KIF20AO95235 890 aa15.95■□□□□ 0.14
LDLR-201ENST00000252444 ITGA6P23229 1130 aa15.95■□□□□ 0.14
LDLR-201ENST00000252444 PNMA2Q9UL42 364 aa15.95■□□□□ 0.14
LDLR-201ENST00000252444 PXDNLA1KZ92 1463 aa15.95■□□□□ 0.14
LDLR-201ENST00000252444 FILIP1LQ4L180 1135 aa15.95■□□□□ 0.14
LDLR-201ENST00000252444 CTAGE5O15320 804 aa15.94■□□□□ 0.14
LDLR-201ENST00000252444 LDHBP07195 334 aaKnown RBP15.94■□□□□ 0.14
LDLR-201ENST00000252444 CYP7A1P22680 504 aa15.94■□□□□ 0.14
LDLR-201ENST00000252444 TNNI3KQ59H18 835 aa15.94■□□□□ 0.14
LDLR-201ENST00000252444 ZSCAN16Q9H4T2 348 aaPredicted RBP15.94■□□□□ 0.14
LDLR-201ENST00000252444 FPGT-TNNI3KV9GXZ4 949 aa15.94■□□□□ 0.14
LDLR-201ENST00000252444 APBA3O96018 575 aa15.94■□□□□ 0.14
LDLR-201ENST00000252444 CTSWP56202 376 aa15.94■□□□□ 0.14
LDLR-201ENST00000252444 GLT8D2Q9H1C3 349 aa15.94■□□□□ 0.14
LDLR-201ENST00000252444 TULP1O00294 542 aaPredicted RBP15.94■□□□□ 0.14
LDLR-201ENST00000252444 RBM6P78332 1123 aaKnown RBP15.94■□□□□ 0.14
LDLR-201ENST00000252444 SDF4Q9BRK5 362 aa15.94■□□□□ 0.14
LDLR-201ENST00000252444 GOLGA8AA7E2F4 631 aa15.94■□□□□ 0.14
LDLR-201ENST00000252444 GOLGA8BA8MQT2 603 aa15.94■□□□□ 0.14
LDLR-201ENST00000252444 IFIT3O14879 490 aaKnown RBP15.94■□□□□ 0.14
LDLR-201ENST00000252444 SSH3Q8TE77 659 aa15.94■□□□□ 0.14
LDLR-201ENST00000252444 RBM28Q9NW13 759 aaKnown RBP15.94■□□□□ 0.14
LDLR-201ENST00000252444 KIF13AQ9H1H9 1805 aa15.93■□□□□ 0.14
LDLR-201ENST00000252444 SMC2O95347 1197 aa15.93■□□□□ 0.14
LDLR-201ENST00000252444 PCP11498 1178 aaKnown RBP15.93■□□□□ 0.14
LDLR-201ENST00000252444 GIGYF2Q6Y7W6 1299 aaKnown RBP15.93■□□□□ 0.14
LDLR-201ENST00000252444 CCDC171Q6TFL3 1326 aa15.93■□□□□ 0.14
LDLR-201ENST00000252444 TMEM266Q2M3C6 531 aa15.93■□□□□ 0.14
LDLR-201ENST00000252444 PCDHB15Q9Y5E8 787 aa15.93■□□□□ 0.14
LDLR-201ENST00000252444 GSE1Q14687 1217 aa15.93■□□□□ 0.14
LDLR-201ENST00000252444 TBC1D32Q96NH3 1257 aa15.93■□□□□ 0.14
LDLR-201ENST00000252444 ANXA1P04083 346 aa15.92■□□□□ 0.14
LDLR-201ENST00000252444 CCDC39Q9UFE4 941 aa15.92■□□□□ 0.14
LDLR-201ENST00000252444 SDSP20132 328 aa15.92■□□□□ 0.14
LDLR-201ENST00000252444 HIBADHP31937 336 aaKnown RBP15.92■□□□□ 0.14
LDLR-201ENST00000252444 MAGEC2Q9UBF1 373 aaPredicted RBP15.92■□□□□ 0.14
LDLR-201ENST00000252444 MST1RQ04912 1400 aa15.92■□□□□ 0.14
LDLR-201ENST00000252444 CD163L1Q9NR16 1453 aa15.92■□□□□ 0.14
LDLR-201ENST00000252444 MINDY4BA8MYZ0 360 aa15.92■□□□□ 0.14
LDLR-201ENST00000252444 RGL2O15211 777 aa15.92■□□□□ 0.14
LDLR-201ENST00000252444 CBFA2T2O43439 604 aa15.92■□□□□ 0.14
LDLR-201ENST00000252444 ATP2B2Q01814 1243 aa15.92■□□□□ 0.14
LDLR-201ENST00000252444 CWF19L2Q2TBE0 894 aaKnown RBP15.92■□□□□ 0.14
LDLR-201ENST00000252444 CCDC70Q6NSX1 233 aa15.92■□□□□ 0.14
LDLR-201ENST00000252444 DDX17Q92841 729 aaKnown RBP15.92■□□□□ 0.14
LDLR-201ENST00000252444 R3HCC1Q9Y3T6 440 aaKnown RBP15.92■□□□□ 0.14
LDLR-201ENST00000252444 BAG4O95429 457 aaKnown RBP15.92■□□□□ 0.14
LDLR-201ENST00000252444 ATL3Q6DD88 541 aa15.92■□□□□ 0.14
LDLR-201ENST00000252444 IFT172Q9UG01 1749 aa15.92■□□□□ 0.14
LDLR-201ENST00000252444 IGHDP01880 384 aa15.91■□□□□ 0.14
LDLR-201ENST00000252444 BEND3Q5T5X7 828 aa15.91■□□□□ 0.14
LDLR-201ENST00000252444 MRE11P49959 708 aa15.91■□□□□ 0.14
LDLR-201ENST00000252444 MPHOSPH10O00566 681 aaKnown RBP15.91■□□□□ 0.14
LDLR-201ENST00000252444 CAVIN2O95810 425 aa15.91■□□□□ 0.14
LDLR-201ENST00000252444 LMOD1P29536 600 aaPredicted RBP15.91■□□□□ 0.14
LDLR-201ENST00000252444 TFCP2Q12800 502 aa15.91■□□□□ 0.14
LDLR-201ENST00000252444 TMEM67Q5HYA8 995 aa15.91■□□□□ 0.14
LDLR-201ENST00000252444 LEMD3Q9Y2U8 911 aa15.91■□□□□ 0.14
LDLR-201ENST00000252444 CCDC192P0DO97 292 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 94.1 ms