RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 ERVK-18Q9QC07 812 aa5.24□□□□□ -1.57
USP39-213ENST00000467885 ZNF629Q9UEG4 869 aaPredicted RBP5.24□□□□□ -1.57
USP39-213ENST00000467885 Q9UFV3 132 aa5.24□□□□□ -1.57
USP39-213ENST00000467885 WARS2Q9UGM6 360 aaKnown RBP5.24□□□□□ -1.57
USP39-213ENST00000467885 PRSS50Q9UI38 385 aa5.24□□□□□ -1.57
USP39-213ENST00000467885 MYRFQ9Y2G1 1151 aa5.24□□□□□ -1.57
USP39-213ENST00000467885 TMA7Q9Y2S6 64 aaKnown RBP5.24□□□□□ -1.57
USP39-213ENST00000467885 RPL36Q9Y3U8 105 aaKnown RBP5.24□□□□□ -1.57
USP39-213ENST00000467885 ZNF407Q9C0G0 2248 aa5.24□□□□□ -1.57
USP39-213ENST00000467885 TLN1Q9Y490 2541 aaKnown RBP5.24□□□□□ -1.57
USP39-213ENST00000467885 IGSF10Q6WRI0 2623 aa5.24□□□□□ -1.57
USP39-213ENST00000467885 ATRXP46100 2492 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 MAP1BP46821 2468 aaKnown RBP5.23□□□□□ -1.57
USP39-213ENST00000467885 TRGV8A0A0C4DH27 118 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 TVP23AA6NH52 213 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 OR6C65A6NJZ3 312 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 TRIM64CA6NLI5 447 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 ZNF593O00488 134 aaPredicted RBP5.23□□□□□ -1.57
USP39-213ENST00000467885 CCL21O00585 134 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 SMNDC1O75940 238 aaKnown RBP eCLIP5.23□□□□□ -1.57
USP39-213ENST00000467885 CNOT4O95628 575 aaKnown RBP5.23□□□□□ -1.57
USP39-213ENST00000467885 IGHV3-9P01782 118 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 HRGP04196 525 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 HTR1AP08908 422 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 SBK2P0C263 348 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 TMIGD3P0DMS9 266 aaPredicted RBP5.23□□□□□ -1.57
USP39-213ENST00000467885 CD8BP10966 210 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 DBTP11182 482 aaKnown RBP5.23□□□□□ -1.57
USP39-213ENST00000467885 FCGR2AP12318 317 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 ZNF3P17036 446 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 ALOX5APP20292 161 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 PAICSP22234 425 aaKnown RBP5.23□□□□□ -1.57
USP39-213ENST00000467885 GNLYP22749 145 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 LAP3P28838 519 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 C21orf33P30042 268 aaPredicted RBP5.23□□□□□ -1.57
USP39-213ENST00000467885 GSTT1P30711 240 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 MTNR1AP48039 350 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 CSNK1A1P48729 337 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 CENPAP49450 140 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 CHN2P52757 468 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 NUDT6P53370 316 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 CLRN1P58418 232 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 HIST1H3AP68431 136 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 ARF1P84077 181 aaKnown RBP5.23□□□□□ -1.57
USP39-213ENST00000467885 TLE1Q04724 770 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 ST3GAL4Q11206 333 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 FAPQ12884 760 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 GGTLC2Q14390 218 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 IRF3Q14653 427 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 STK11Q15831 433 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 RSPO1Q2MKA7 263 aaPredicted RBP5.23□□□□□ -1.57
USP39-213ENST00000467885 KLHL12Q53G59 568 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 KLHL22Q53GT1 634 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 ZNF684Q5T5D7 378 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 HIST2H3PS2Q5TEC6 136 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 FAM27BQ5VT28 67 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 RNLSQ5VYX0 342 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 OTPQ5XKR4 325 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 TMEM211Q6ICI0 200 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 TFAP2EQ6VUC0 442 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 HIST2H3AQ71DI3 136 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 JAZF1Q86VZ6 243 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 GLB1L2Q8IW92 636 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 SKA3Q8IX90 412 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 ZNF100Q8IYN0 542 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 GABRG1Q8N1C3 465 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 ZNF786Q8N393 782 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 POMGNT2Q8NAT1 580 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 ZNF485Q8NCK3 441 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 SLC26A10Q8NG04 563 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 OR4F15Q8NGB8 312 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 OR52I1Q8NGK6 324 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 OR6K3Q8NGY3 331 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 OR6N1Q8NGY5 312 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 C11orf40Q8WZ69 217 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 NSMAFQ92636 917 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 BCL2L2Q92843 193 aaPredicted RBP5.23□□□□□ -1.57
USP39-213ENST00000467885 RFKQ969G6 155 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 NABP1Q96AH0 204 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 APH1AQ96BI3 265 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 ZMYND19Q96E35 227 aaPredicted RBP5.23□□□□□ -1.57
USP39-213ENST00000467885 RNFT2Q96EX2 444 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 ZFP3Q96NJ6 502 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 FOXN4Q96NZ1 517 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 PSMG3-AS1Q96PY0 264 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 RBM24Q9BX46 236 aaKnown RBP5.23□□□□□ -1.57
USP39-213ENST00000467885 KRTAP9-2Q9BYQ4 174 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 PRRG3Q9BZD7 231 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 NDEL1Q9GZM8 345 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 SLCO5A1Q9H2Y9 848 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 RERGLQ9H628 205 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 C12orf49Q9H741 205 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 SIAEQ9HAT2 523 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 ADGRL4Q9HBW9 690 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 CRLF2Q9HC73 371 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 CLEC2DQ9UHP7 191 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP5.23□□□□□ -1.57
USP39-213ENST00000467885 TPRKBQ9Y3C4 175 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 KALRNO60229 2985 aa5.23□□□□□ -1.57
USP39-213ENST00000467885 EFCAB10A6NFE3 127 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms