RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 CHST6Q9GZX3 395 aa10.5□□□□□ -0.73
PTPN4-201ENST00000263708 C12orf10Q9HB07 376 aa10.5□□□□□ -0.73
PTPN4-201ENST00000263708 NRIP3Q9NQ35 241 aa10.5□□□□□ -0.73
PTPN4-201ENST00000263708 SPHK1Q9NYA1 384 aa10.5□□□□□ -0.73
PTPN4-201ENST00000263708 INHBCP55103 352 aa10.5□□□□□ -0.73
PTPN4-201ENST00000263708 KHSRPQ92945 711 aaKnown RBP eCLIP10.5□□□□□ -0.733e-6■■■□□ 19
PTPN4-201ENST00000263708 DUSP1P28562 367 aa10.5□□□□□ -0.73
PTPN4-201ENST00000263708 GLYATL3Q5SZD4 288 aa10.5□□□□□ -0.73
PTPN4-201ENST00000263708 GDPGP1Q6ZNW5 385 aa10.5□□□□□ -0.73
PTPN4-201ENST00000263708 MISPQ8IVT2 679 aa10.5□□□□□ -0.73
PTPN4-201ENST00000263708 H0YGG7 62 aa10.5□□□□□ -0.73
PTPN4-201ENST00000263708 SIRPB1O00241 398 aa10.5□□□□□ -0.73
PTPN4-201ENST00000263708 CPN1P15169 458 aa10.5□□□□□ -0.73
PTPN4-201ENST00000263708 PIWIL3Q7Z3Z3 882 aaKnown RBP10.5□□□□□ -0.73
PTPN4-201ENST00000263708 TMEM123Q8N131 208 aa10.5□□□□□ -0.73
PTPN4-201ENST00000263708 KCNRGQ8N5I3 272 aa10.5□□□□□ -0.73
PTPN4-201ENST00000263708 NMNAT3Q96T66 252 aa10.5□□□□□ -0.73
PTPN4-201ENST00000263708 ATP13A2Q9NQ11 1180 aa10.5□□□□□ -0.73
PTPN4-201ENST00000263708 CNMDO75829 334 aa10.5□□□□□ -0.73
PTPN4-201ENST00000263708 ETV6P41212 452 aa10.5□□□□□ -0.73
PTPN4-201ENST00000263708 RTP2Q5QGT7 225 aa10.5□□□□□ -0.73
PTPN4-201ENST00000263708 NME4O00746 187 aa10.5□□□□□ -0.73
PTPN4-201ENST00000263708 CPZQ66K79 652 aa10.5□□□□□ -0.73
PTPN4-201ENST00000263708 ANKRD16Q6P6B7 361 aa10.5□□□□□ -0.73
PTPN4-201ENST00000263708 TMEM64Q6YI46 380 aa10.5□□□□□ -0.73
PTPN4-201ENST00000263708 MRPL10Q7Z7H8 261 aaKnown RBP10.5□□□□□ -0.73
PTPN4-201ENST00000263708 FAM71CQ8NEG0 241 aa10.5□□□□□ -0.73
PTPN4-201ENST00000263708 RP1P56715 2156 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 DNAJC13O75165 2243 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 GPR171O14626 319 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 RD3LP0DJH9 198 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 TIGITQ495A1 244 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 OR2AE1Q8NHA4 323 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 C20orf85Q9H1P6 137 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 AP5S1Q9NUS5 200 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 FBXO4Q9UKT5 387 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 SHPRHQ149N8 1683 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 PLRG1O43660 514 aaKnown RBP10.49□□□□□ -0.73
PTPN4-201ENST00000263708 NTMT1Q9BV86 223 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 ZDHHC11Q9H8X9 412 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 IGSF5Q9NSI5 407 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 ADAM29Q9UKF5 820 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 MMACHCQ9Y4U1 282 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 CICQ96RK0 1608 aaPredicted RBP10.49□□□□□ -0.73
PTPN4-201ENST00000263708 TMED7-TICAM2A0A0A6YYA0 188 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 BMPR1BO00238 502 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 HIST1H1TP22492 207 aaPredicted RBP10.49□□□□□ -0.73
PTPN4-201ENST00000263708 KDM4DQ6B0I6 523 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 B3GNT8Q7Z7M8 397 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 SIRT6Q8N6T7 355 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 OR13C5Q8NGS8 318 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 ZFAND2BQ8WV99 257 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 SLC35A4Q96G79 324 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 HES4Q9HCC6 221 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 SLC22A11Q9NSA0 550 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 TMED7Q9Y3B3 224 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 TRBV4-1A0A0J9YWV2 114 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 EIF1BO60739 113 aaKnown RBP10.49□□□□□ -0.73
PTPN4-201ENST00000263708 AIFM1O95831 613 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 F11P03951 625 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 GLRA1P23415 457 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 CASP3P42574 277 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 Q56UQ5 140 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 BANF2Q9H503 90 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 GAREM1Q9H706 876 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 NWD2Q9ULI1 1742 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 HSD17B1P14061 328 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 PGBD5Q8N414 524 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 TMEM106AQ96A25 262 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 DTD2Q96FN9 168 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 EDEM2Q9BV94 578 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 ACPTQ9BZG2 426 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 DCAF13Q9NV06 445 aaKnown RBP10.49□□□□□ -0.73
PTPN4-201ENST00000263708 KPTNQ9Y664 436 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 LOC100289279A0A1B0GTE1 492 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 APEX1P27695 318 aaKnown RBP10.49□□□□□ -0.73
PTPN4-201ENST00000263708 MED25Q71SY5 747 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 CHCHD4Q8N4Q1 142 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 TRGV8A0A0C4DH27 118 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 PDGFAP04085 211 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 ZNF280AP59817 542 aaPredicted RBP10.49□□□□□ -0.73
PTPN4-201ENST00000263708 SLC10A2Q12908 348 aaPredicted RBP10.49□□□□□ -0.73
PTPN4-201ENST00000263708 PCK2Q16822 640 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 PLA1AQ53H76 456 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 OR1N1Q8NGS0 311 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 COMMD5Q9GZQ3 224 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 UCK1Q9HA47 277 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 H2AFB1P0C5Y9 115 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 TACR1P25103 407 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 GDNFP39905 211 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 OR51I2Q9H344 312 aa10.49□□□□□ -0.73
PTPN4-201ENST00000263708 C5orf49A4QMS7 147 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 ZNF239Q16600 458 aaKnown RBP10.48□□□□□ -0.73
PTPN4-201ENST00000263708 ACOT6Q3I5F7 207 aaPredicted RBP10.48□□□□□ -0.73
PTPN4-201ENST00000263708 TFAP2EQ6VUC0 442 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 DPPA4Q7L190 304 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 DCXRQ7Z4W1 244 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 MOB3BQ86TA1 216 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 OR2AK2Q8NG84 335 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 AAMDCQ9H7C9 122 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms