RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 MDC1Q14676 2089 aaKnown RBP11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 ZNF860A6NHJ4 632 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 OR6C76A6NM76 312 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 C1orf196B1AJZ1 125 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 CDC40O60508 579 aaKnown RBP eCLIP11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 ADRA2CP18825 462 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 RBM34P42696 430 aaKnown RBP11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 DIO1P49895 249 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 VASPP50552 380 aaPredicted RBP11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 MECP2P51608 486 aaKnown RBP11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 LIPNQ5VXI9 398 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 LEG1Q6P5S2 330 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 UNQ9370/PRO34162Q6UXP9 181 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 JAZF1Q86VZ6 243 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 OR2L13Q8N349 312 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 TMED6Q8WW62 240 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 NKD1Q969G9 470 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 BARX1Q9HBU1 254 aaPredicted RBP11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 STEAP1Q9UHE8 339 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 A0A0B4J2A0 478 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 THBS1P07996 1170 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 SPI1P17947 270 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 GABRA3P34903 492 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 RAB28P51157 221 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 C21orf62-AS1Q17RA5 79 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 PLEKHN1Q494U1 663 aaPredicted RBP11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 CORO6Q6QEF8 472 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 OR2A1Q8NGT9 310 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 ZNF296Q8WUU4 475 aaPredicted RBP11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 LINC00615Q96LM1 132 aaPredicted RBP11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 SRA1Q9HD15 236 aaKnown RBP11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 MKKSQ9NPJ1 570 aaPredicted RBP11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 SHPKQ9UHJ6 478 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 ZNF346Q9UL40 294 aaKnown RBP11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 SLC22A7Q9Y694 548 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 ACAA1P09110 424 aaPredicted RBP11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 TLX1P31314 330 aaPredicted RBP11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 PBX2P40425 430 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 TAS2R19P59542 299 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 NTHL1P78549 312 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 RHOUQ7L0Q8 258 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 OR6S1Q8NH40 331 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 RGP1Q92546 391 aaPredicted RBP11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 ZNF558Q96NG5 402 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 TSSK2Q96PF2 358 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 PRMT8Q9NR22 394 aaPredicted RBP11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 TNFSF18Q9UNG2 199 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 TRAV8-7A0A075B6U6 113 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 IGKV1-8A0A0C4DH67 115 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 TVP23AA6NH52 213 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 OR52A4PA6NMU1 304 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 BLOC1S5-TXNDC5H3BN57 136 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 AGPAT2O15120 278 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 FGF18O76093 207 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 ADCYAP1P18509 176 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 CASRP41180 1078 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 DHRS2Q13268 280 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 DEFB134Q4QY38 66 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 CD163Q86VB7 1156 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 BPIFB2Q8N4F0 458 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 OR5M8Q8NGP6 311 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 ZNRF4Q8WWF5 429 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 DCUN1D4Q92564 292 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 PHYHIPLQ96FC7 376 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 CES1P1Q9UKY3 287 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 RPH3AQ9Y2J0 694 aaPredicted RBP11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 FAM96BQ9Y3D0 163 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 MYO7AQ13402 2215 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 DENND4AQ7Z401 1863 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 GRXCR1A8MXD5 290 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 NRG2O14511 850 aaPredicted RBP11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 CTAG2O75638 210 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 ACTL6AO96019 429 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 C8AP07357 584 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 RNF224P0DH78 156 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 TPT1P13693 172 aaKnown RBP11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 ZNF28P17035 718 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 CCKBRP32239 447 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 RPS27P42677 84 aaKnown RBP11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 ALKBH1Q13686 389 aaKnown RBP11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 LY6G6FQ5SQ64 297 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 OR6N2Q8NGY6 317 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 ZNF681Q96N22 645 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 MYADMQ96S97 322 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 ALG12Q9BV10 488 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 APOBEC3BQ9UH17 382 aaKnown RBP11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 KLF15Q9UIH9 416 aa11.72□□□□□ -0.53
SFSWAP-209ENST00000540469 TCF20Q9UGU0 1960 aaKnown RBP11.71□□□□□ -0.53
SFSWAP-209ENST00000540469 MTCL1Q9Y4B5 1905 aaKnown RBP11.71□□□□□ -0.53
SFSWAP-209ENST00000540469 EIF4E2O60573 245 aaKnown RBP11.71□□□□□ -0.53
SFSWAP-209ENST00000540469 LY86O95711 162 aa11.71□□□□□ -0.53
SFSWAP-209ENST00000540469 ITGB8P26012 769 aa11.71□□□□□ -0.53
SFSWAP-209ENST00000540469 RAB11BQ15907 218 aa11.71□□□□□ -0.53
SFSWAP-209ENST00000540469 NKAPLQ5M9Q1 402 aa11.71□□□□□ -0.53
SFSWAP-209ENST00000540469 ZNF417Q8TAU3 575 aa11.71□□□□□ -0.53
SFSWAP-209ENST00000540469 ZNF350Q9GZX5 532 aa11.71□□□□□ -0.53
SFSWAP-209ENST00000540469 RSPH9Q9H1X1 276 aaPredicted RBP11.71□□□□□ -0.53
SFSWAP-209ENST00000540469 HCFC1R1Q9NWW0 138 aa11.71□□□□□ -0.53
SFSWAP-209ENST00000540469 LAMP5Q9UJQ1 280 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms