RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 CH25HO95992 272 aa14.3□□□□□ -0.12
CCDC28B-204ENST00000469003 IGFBP1P08833 259 aaPredicted RBP14.3□□□□□ -0.12
CCDC28B-204ENST00000469003 ZNF35P13682 527 aa14.3□□□□□ -0.12
CCDC28B-204ENST00000469003 DAOP14920 347 aa14.3□□□□□ -0.12
CCDC28B-204ENST00000469003 EVX1P49640 407 aa14.3□□□□□ -0.12
CCDC28B-204ENST00000469003 GZMMP51124 257 aa14.3□□□□□ -0.12
CCDC28B-204ENST00000469003 TRMT5Q32P41 509 aaKnown RBP14.3□□□□□ -0.12
CCDC28B-204ENST00000469003 METTL21CQ5VZV1 264 aa14.3□□□□□ -0.12
CCDC28B-204ENST00000469003 SLC35D2Q76EJ3 337 aa14.3□□□□□ -0.12
CCDC28B-204ENST00000469003 PIWIL3Q7Z3Z3 882 aaKnown RBP14.3□□□□□ -0.12
CCDC28B-204ENST00000469003 ZCCHC24Q8N2G6 241 aaKnown RBP14.3□□□□□ -0.12
CCDC28B-204ENST00000469003 ARIH2OSQ8N7S6 290 aa14.3□□□□□ -0.12
CCDC28B-204ENST00000469003 OR10A6Q8NH74 314 aa14.3□□□□□ -0.12
CCDC28B-204ENST00000469003 OR6X1Q8NH79 312 aa14.3□□□□□ -0.12
CCDC28B-204ENST00000469003 SLC26A7Q8TE54 656 aa14.3□□□□□ -0.12
CCDC28B-204ENST00000469003 RASSF5Q8WWW0 418 aa14.3□□□□□ -0.12
CCDC28B-204ENST00000469003 TMEM54Q969K7 222 aa14.3□□□□□ -0.12
CCDC28B-204ENST00000469003 MRPL24Q96A35 216 aaKnown RBP14.3□□□□□ -0.12
CCDC28B-204ENST00000469003 ZNF426Q9BUY5 554 aa14.3□□□□□ -0.12
CCDC28B-204ENST00000469003 SLC19A3Q9BZV2 496 aa14.3□□□□□ -0.12
CCDC28B-204ENST00000469003 TAS2R5Q9NYW4 299 aa14.3□□□□□ -0.12
CCDC28B-204ENST00000469003 FBXL3Q9UKT7 428 aa14.3□□□□□ -0.12
CCDC28B-204ENST00000469003 SLC7A7Q9UM01 511 aa14.3□□□□□ -0.12
CCDC28B-204ENST00000469003 A0A0G2JND7 137 aa14.29□□□□□ -0.12
CCDC28B-204ENST00000469003 SH3PXD2BA1X283 911 aa14.29□□□□□ -0.12
CCDC28B-204ENST00000469003 PHF1O43189 567 aaPredicted RBP14.29□□□□□ -0.12
CCDC28B-204ENST00000469003 RAB36O95755 333 aa14.29□□□□□ -0.12
CCDC28B-204ENST00000469003 ADRA2AP08913 450 aa14.29□□□□□ -0.12
CCDC28B-204ENST00000469003 GIPRP48546 466 aa14.29□□□□□ -0.12
CCDC28B-204ENST00000469003 PTDSS1P48651 473 aaKnown RBP14.29□□□□□ -0.12
CCDC28B-204ENST00000469003 RAB1AP62820 205 aa14.29□□□□□ -0.12
CCDC28B-204ENST00000469003 VMACQ2NL98 169 aa14.29□□□□□ -0.12
CCDC28B-204ENST00000469003 CCDC80Q76M96 950 aa14.29□□□□□ -0.12
CCDC28B-204ENST00000469003 TSPYL5Q86VY4 417 aaPredicted RBP14.29□□□□□ -0.12
CCDC28B-204ENST00000469003 ZNF786Q8N393 782 aa14.29□□□□□ -0.12
CCDC28B-204ENST00000469003 CHODLQ9H9P2 273 aa14.29□□□□□ -0.12
CCDC28B-204ENST00000469003 GLTPQ9NZD2 209 aa14.29□□□□□ -0.12
CCDC28B-204ENST00000469003 ZNF229Q9UJW7 825 aa14.29□□□□□ -0.12
CCDC28B-204ENST00000469003 FBP2O00757 339 aa14.28□□□□□ -0.12
CCDC28B-204ENST00000469003 RNF13O43567 381 aa14.28□□□□□ -0.12
CCDC28B-204ENST00000469003 SYNGR3O43761 229 aa14.28□□□□□ -0.12
CCDC28B-204ENST00000469003 ENTPD5O75356 428 aa14.28□□□□□ -0.12
CCDC28B-204ENST00000469003 HIST1H2ABP04908 130 aa14.28□□□□□ -0.12
CCDC28B-204ENST00000469003 VIMP08670 466 aaKnown RBP14.28□□□□□ -0.12
CCDC28B-204ENST00000469003 TACSTD2P09758 323 aa14.28□□□□□ -0.12
CCDC28B-204ENST00000469003 ASAH2BP0C7U1 165 aa14.28□□□□□ -0.12
CCDC28B-204ENST00000469003 THBS2P35442 1172 aa14.28□□□□□ -0.12
CCDC28B-204ENST00000469003 GLRXP35754 106 aa14.28□□□□□ -0.12
CCDC28B-204ENST00000469003 CRYBA2P53672 197 aa14.28□□□□□ -0.12
CCDC28B-204ENST00000469003 RPS23P62266 143 aaKnown RBP14.28□□□□□ -0.12
CCDC28B-204ENST00000469003 CYLC2Q14093 348 aaPredicted RBP14.28□□□□□ -0.12
CCDC28B-204ENST00000469003 MSMPQ1L6U9 139 aa14.28□□□□□ -0.12
CCDC28B-204ENST00000469003 NANOGP8Q6NSW7 305 aa14.28□□□□□ -0.12
CCDC28B-204ENST00000469003 HIST3H2AQ7L7L0 130 aa14.28□□□□□ -0.12
CCDC28B-204ENST00000469003 SKA3Q8IX90 412 aa14.28□□□□□ -0.12
CCDC28B-204ENST00000469003 LRRC17Q8N6Y2 441 aa14.28□□□□□ -0.12
CCDC28B-204ENST00000469003 UBASH3BQ8TF42 649 aa14.28□□□□□ -0.12
CCDC28B-204ENST00000469003 HIST1H2ACQ93077 130 aa14.28□□□□□ -0.12
CCDC28B-204ENST00000469003 ZNF566Q969W8 418 aa14.28□□□□□ -0.12
CCDC28B-204ENST00000469003 SLC25A44Q96H78 314 aaPredicted RBP14.28□□□□□ -0.12
CCDC28B-204ENST00000469003 MRPL37Q9BZE1 423 aaKnown RBP14.28□□□□□ -0.12
CCDC28B-204ENST00000469003 NANOGQ9H9S0 305 aa14.28□□□□□ -0.12
CCDC28B-204ENST00000469003 M0R233 179 aa14.27□□□□□ -0.13
CCDC28B-204ENST00000469003 KPNA4O00629 521 aaPredicted RBP14.27□□□□□ -0.13
CCDC28B-204ENST00000469003 TGFAP01135 160 aa14.27□□□□□ -0.13
CCDC28B-204ENST00000469003 SRD5A1P18405 259 aa14.27□□□□□ -0.13
CCDC28B-204ENST00000469003 CHN2P52757 468 aa14.27□□□□□ -0.13
CCDC28B-204ENST00000469003 GALK2Q01415 458 aa14.27□□□□□ -0.13
CCDC28B-204ENST00000469003 MELKQ14680 651 aa14.27□□□□□ -0.13
CCDC28B-204ENST00000469003 RAB39AQ14964 217 aa14.27□□□□□ -0.13
CCDC28B-204ENST00000469003 FXNQ16595 210 aa14.27□□□□□ -0.13
CCDC28B-204ENST00000469003 FAM120AOSQ5T036 256 aa14.27□□□□□ -0.13
CCDC28B-204ENST00000469003 GKAP1Q5VSY0 366 aaPredicted RBP14.27□□□□□ -0.13
CCDC28B-204ENST00000469003 LRFN4Q6PJG9 635 aa14.27□□□□□ -0.13
CCDC28B-204ENST00000469003 SLC22A24Q8N4F4 322 aa14.27□□□□□ -0.13
CCDC28B-204ENST00000469003 HPS1Q92902 700 aa14.27□□□□□ -0.13
CCDC28B-204ENST00000469003 SH3GL1Q99961 368 aa14.27□□□□□ -0.13
CCDC28B-204ENST00000469003 PRSS27Q9BQR3 290 aa14.27□□□□□ -0.13
CCDC28B-204ENST00000469003 SOX7Q9BT81 388 aa14.27□□□□□ -0.13
CCDC28B-204ENST00000469003 TPK1Q9H3S4 243 aa14.27□□□□□ -0.13
CCDC28B-204ENST00000469003 TMEM38BQ9NVV0 291 aa14.27□□□□□ -0.13
CCDC28B-204ENST00000469003 ARGLU1Q9NWB6 273 aaPredicted RBP14.27□□□□□ -0.13
CCDC28B-204ENST00000469003 REV1Q9UBZ9 1251 aa14.27□□□□□ -0.13
CCDC28B-204ENST00000469003 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.27□□□□□ -0.13
CCDC28B-204ENST00000469003 LRP5LA4QPB2 252 aa14.26□□□□□ -0.13
CCDC28B-204ENST00000469003 DHHO43323 396 aa14.26□□□□□ -0.13
CCDC28B-204ENST00000469003 LILRA1O75019 489 aa14.26□□□□□ -0.13
CCDC28B-204ENST00000469003 BCL10O95999 233 aa14.26□□□□□ -0.13
CCDC28B-204ENST00000469003 SERPINA5P05154 406 aa14.26□□□□□ -0.13
CCDC28B-204ENST00000469003 PATE4P0C8F1 98 aa14.26□□□□□ -0.13
CCDC28B-204ENST00000469003 PGA4P0DJD7 388 aa14.26□□□□□ -0.13
CCDC28B-204ENST00000469003 PGA3P0DJD8 388 aa14.26□□□□□ -0.13
CCDC28B-204ENST00000469003 OR8G3PP0DMU2 310 aa14.26□□□□□ -0.13
CCDC28B-204ENST00000469003 UMPSP11172 480 aa14.26□□□□□ -0.13
CCDC28B-204ENST00000469003 HNF1AP20823 631 aa14.26□□□□□ -0.13
CCDC28B-204ENST00000469003 LSP1P33241 339 aa14.26□□□□□ -0.13
CCDC28B-204ENST00000469003 RIN1Q13671 783 aa14.26□□□□□ -0.13
CCDC28B-204ENST00000469003 NANOGNBQ7Z5D8 188 aa14.26□□□□□ -0.13
CCDC28B-204ENST00000469003 CARM1Q86X55 608 aa14.26□□□□□ -0.13
CCDC28B-204ENST00000469003 CALHM3Q86XJ0 350 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms