RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 PGRMC2O15173 223 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 NUPL2O15504 423 aaKnown RBP4.83□□□□□ -1.64
USP28-213ENST00000544967 PCDH7O60245 1069 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 UBXN7O94888 489 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 ATP1B1P05026 303 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 IGHV4-34P06331 123 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 FCER2P06734 321 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 ZNF806P0C7X5 589 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 CD79AP11912 226 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 CFPP27918 469 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 GDNFP39905 211 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 ACTR1BP42025 376 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 PPIAP62937 165 aaKnown RBP4.83□□□□□ -1.64
USP28-213ENST00000544967 DPTQ07507 201 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 GAB1Q13480 694 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 TRA2AQ13595 282 aaKnown RBP eCLIP4.83□□□□□ -1.64
USP28-213ENST00000544967 ARHGEF7Q14155 803 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 PON3Q15166 354 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 PCGF3Q3KNV8 242 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 GRHL2Q6ISB3 625 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 PSAPL1Q6NUJ1 521 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 LRRN1Q6UXK5 716 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 TUSC5Q8IXB3 177 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 BRIX1Q8TDN6 353 aaKnown RBP4.83□□□□□ -1.64
USP28-213ENST00000544967 ARL11Q969Q4 196 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 MS4A3Q96HJ5 214 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 INSM2Q96T92 566 aaPredicted RBP4.83□□□□□ -1.64
USP28-213ENST00000544967 MESP1Q9BRJ9 268 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 C1QTNF6Q9BXI9 259 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 GPR61Q9BZJ8 451 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 SEMA6CQ9H3T2 930 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 REEP4Q9H6H4 257 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 NIT2Q9NQR4 276 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 NTMQ9P121 344 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 ZNF107Q9UII5 783 aaPredicted RBP4.83□□□□□ -1.64
USP28-213ENST00000544967 MRTO4Q9UKD2 239 aaKnown RBP4.83□□□□□ -1.64
USP28-213ENST00000544967 FBXW2Q9UKT8 454 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 YARS2Q9Y2Z4 477 aaKnown RBP4.83□□□□□ -1.64
USP28-213ENST00000544967 OR14I1A6ND48 311 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 COLCA2A8K830 154 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 J3QW42 95 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 SOCS6O14544 535 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 FFAR3O14843 346 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 MID1O15344 667 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 GPR42O15529 346 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 ADAM20O43506 726 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 TLX2O43763 284 aaPredicted RBP4.83□□□□□ -1.64
USP28-213ENST00000544967 DNAJB6O75190 326 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 MOCS2O96007 188 aaPredicted RBP4.83□□□□□ -1.64
USP28-213ENST00000544967 PF4P02776 101 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 MT-ND4LP03901 98 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 WNT1P04628 370 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 NR2F1P10589 423 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 HOXB2P14652 356 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 POU3F2P20265 443 aaPredicted RBP4.83□□□□□ -1.64
USP28-213ENST00000544967 UQCRC2P22695 453 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 CERS1P27544 350 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 SDHAP31040 664 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 RAB5CP51148 216 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 ADPRHP54922 357 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 SNRPD1P62314 119 aaKnown RBP4.83□□□□□ -1.64
USP28-213ENST00000544967 DDX39BQ13838 428 aaKnown RBP4.83□□□□□ -1.64
USP28-213ENST00000544967 HNF4GQ14541 408 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 GINS1Q14691 196 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 PEA15Q15121 130 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 CST6Q15828 149 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 ZNF658BQ4V348 819 aaPredicted RBP4.83□□□□□ -1.64
USP28-213ENST00000544967 ATP13A5Q4VNC0 1218 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 ERN2Q76MJ5 926 aaKnown RBP4.83□□□□□ -1.64
USP28-213ENST00000544967 LINGO2Q7L985 606 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 PARGQ86W56 976 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 SERPINA12Q8IW75 414 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 CFAP206Q8IYR0 622 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 POMGNT2Q8NAT1 580 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 OR1J4Q8NGS1 313 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 TMEM203Q969S6 136 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 APOLD1Q96LR9 279 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 EGFL8Q99944 293 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 C2orf88Q9BSF0 95 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 RIOK2Q9BVS4 552 aaKnown RBP4.83□□□□□ -1.64
USP28-213ENST00000544967 C1QTNF2Q9BXJ5 285 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 UNKLQ9H9P5 680 aaKnown RBP4.83□□□□□ -1.64
USP28-213ENST00000544967 MYNNQ9NPC7 610 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 MMP26Q9NRE1 261 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 SLC22A14Q9Y267 594 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 RASD1Q9Y272 281 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 ETV7Q9Y603 341 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 A0A1W2PR77 199 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 F8VVB4 439 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 F8VWA3 439 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 H3BN98 237 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 M0R129 80 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 CCL22O00626 93 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 BCAT2O15382 392 aaPredicted RBP4.82□□□□□ -1.64
USP28-213ENST00000544967 SLC31A2O15432 143 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 SH3BGRLO75368 114 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 ARL6IP5O75915 188 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 KDM4BO94953 1096 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 IGSF6O95976 241 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 TMIGD3P0DMS9 266 aaPredicted RBP4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms