RNA–Protein interactions for RNA: YMR200W

ROT1, Transcript of Molecular chaperone involved in protein folding in ER, yeastyeast

Gene ROT1, Length 771 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ROT1YMR200W SHE9Q04172 456 aa5.68□□□□□ -1.5
ROT1YMR200W YLR224WQ05947 369 aa5.68□□□□□ -1.5
ROT1YMR200W YDL124WQ07551 312 aaKnown RBP5.68□□□□□ -1.5
ROT1YMR200W TPO1Q07824 586 aa5.68□□□□□ -1.5
ROT1YMR200W MDM38Q08179 573 aa5.68□□□□□ -1.5
ROT1YMR200W RTP1Q12751 981 aa5.68□□□□□ -1.5
ROT1YMR200W VBA5P36172 582 aa5.67□□□□□ -1.5
ROT1YMR200W MBP1P39678 833 aa5.67□□□□□ -1.5
ROT1YMR200W GDH3P39708 457 aa5.67□□□□□ -1.5
ROT1YMR200W NPP2P39997 493 aa5.67□□□□□ -1.5
ROT1YMR200W GAL1P04385 528 aa5.66□□□□□ -1.5
ROT1YMR200W SBA1P28707 216 aaKnown RBP5.66□□□□□ -1.5
ROT1YMR200W APL2P36000 726 aaPredicted RBP5.66□□□□□ -1.5
ROT1YMR200W PBY1P38254 753 aa5.66□□□□□ -1.5
ROT1YMR200W GIC1P38785 314 aa5.66□□□□□ -1.5
ROT1YMR200W ZRG8P40021 1076 aa5.66□□□□□ -1.5
ROT1YMR200W NDE1P40215 560 aa5.66□□□□□ -1.5
ROT1YMR200W ALR2P43553 858 aa5.66□□□□□ -1.5
ROT1YMR200W UBA2P52488 636 aa5.66□□□□□ -1.5
ROT1YMR200W UTP8P53276 713 aaKnown RBP5.66□□□□□ -1.5
ROT1YMR200W ADY3Q07732 790 aa5.66□□□□□ -1.5
ROT1YMR200W PTP2P29461 750 aa5.65□□□□□ -1.5
ROT1YMR200W PIN4P34217 668 aaKnown RBP RIP-Chip data5.65□□□□□ -1.5not detected
ROT1YMR200W TYS1P36421 394 aaKnown RBP5.65□□□□□ -1.5
ROT1YMR200W RIM4P38741 713 aa5.65□□□□□ -1.5
ROT1YMR200W DSS1P39112 969 aa5.65□□□□□ -1.5
ROT1YMR200W SRB7P47822 140 aa5.65□□□□□ -1.5
ROT1YMR200W MAL11P53048 616 aa5.65□□□□□ -1.5
ROT1YMR200W MCM6P53091 1017 aaKnown RBP5.65□□□□□ -1.5
ROT1YMR200W HFD1Q04458 532 aa5.65□□□□□ -1.5
ROT1YMR200W OSW2Q12202 724 aa5.65□□□□□ -1.5
ROT1YMR200W TUB2P02557 457 aaKnown RBP5.64□□□□□ -1.51
ROT1YMR200W ENA1P13587 1091 aa5.64□□□□□ -1.51
ROT1YMR200W STE11P23561 717 aa5.64□□□□□ -1.51
ROT1YMR200W MEF1P25039 761 aa5.64□□□□□ -1.51
ROT1YMR200W MUM2P38236 366 aa5.64□□□□□ -1.51
ROT1YMR200W MNN10P50108 393 aaKnown RBP5.64□□□□□ -1.51
ROT1YMR200W ENA2Q01896 1091 aa5.64□□□□□ -1.51
ROT1YMR200W YML131WQ03102 365 aa5.64□□□□□ -1.51
ROT1YMR200W SRT1Q03175 343 aa5.64□□□□□ -1.51
ROT1YMR200W TSR2Q06672 205 aaKnown RBP5.64□□□□□ -1.51
ROT1YMR200W CDA1Q06702 301 aa5.64□□□□□ -1.51
ROT1YMR200W RLP24Q07915 199 aaKnown RBP5.64□□□□□ -1.51
ROT1YMR200W PSR2Q07949 397 aa5.64□□□□□ -1.51
ROT1YMR200W NOP12Q08208 459 aaKnown RBP5.64□□□□□ -1.51
ROT1YMR200W RRP6Q12149 733 aaKnown RBP5.64□□□□□ -1.51
ROT1YMR200W YLL058WQ12198 575 aa5.64□□□□□ -1.51
ROT1YMR200W ENA5Q12691 1091 aa5.64□□□□□ -1.51
ROT1YMR200W SRP101P32916 621 aa5.63□□□□□ -1.51
ROT1YMR200W POA1P38218 177 aa5.63□□□□□ -1.51
ROT1YMR200W FAF1P40546 346 aaPredicted RBP5.63□□□□□ -1.51
ROT1YMR200W SXM1Q04175 944 aaKnown RBP5.63□□□□□ -1.51
ROT1YMR200W GRC3Q07845 632 aa5.63□□□□□ -1.51
ROT1YMR200W YLR001CQ07895 862 aa5.63□□□□□ -1.51
ROT1YMR200W YOL087CQ99247 1116 aa5.63□□□□□ -1.51
ROT1YMR200W CDC31P06704 161 aaKnown RBP5.62□□□□□ -1.51
ROT1YMR200W PRP9P19736 530 aaKnown RBP5.62□□□□□ -1.51
ROT1YMR200W HCM1P25364 564 aa5.62□□□□□ -1.51
ROT1YMR200W CDC12P32468 407 aaKnown RBP5.62□□□□□ -1.51
ROT1YMR200W NIC96P34077 839 aa5.62□□□□□ -1.51
ROT1YMR200W PLB1P39105 664 aa5.62□□□□□ -1.51
ROT1YMR200W SAH1P39954 449 aaKnown RBP5.62□□□□□ -1.51
ROT1YMR200W MNT3P40549 630 aa5.62□□□□□ -1.51
ROT1YMR200W MET12P46151 657 aa5.62□□□□□ -1.51
ROT1YMR200W PHO23P50947 330 aa5.62□□□□□ -1.51
ROT1YMR200W GSF2Q04697 403 aaKnown RBP5.62□□□□□ -1.51
ROT1YMR200W REH1Q06709 432 aa5.62□□□□□ -1.51
ROT1YMR200W APA1P16550 321 aaKnown RBP5.61□□□□□ -1.51
ROT1YMR200W FUN30P31380 1131 aa5.61□□□□□ -1.51
ROT1YMR200W ECM21P38167 1117 aaKnown RBP5.61□□□□□ -1.51
ROT1YMR200W YGR012WP53206 393 aa5.61□□□□□ -1.51
ROT1YMR200W SFB2P53953 876 aa5.61□□□□□ -1.51
ROT1YMR200W BUL2Q03758 920 aaKnown RBP5.61□□□□□ -1.51
ROT1YMR200W MTQ2Q03920 221 aaPredicted RBP5.61□□□□□ -1.51
ROT1YMR200W SPC19Q03954 165 aa5.61□□□□□ -1.51
ROT1YMR200W VIP1Q06685 1146 aaKnown RBP5.61□□□□□ -1.51
ROT1YMR200W HIS5P07172 385 aa5.6□□□□□ -1.51
ROT1YMR200W TOM70P07213 617 aaKnown RBP5.6□□□□□ -1.51
ROT1YMR200W DBF20P32328 564 aa5.6□□□□□ -1.51
ROT1YMR200W TRM2P33753 639 aa5.6□□□□□ -1.51
ROT1YMR200W YKL133CP36066 463 aa5.6□□□□□ -1.51
ROT1YMR200W SAP185P40856 1058 aa5.6□□□□□ -1.51
ROT1YMR200W NPL3Q01560 414 aaKnown RBP RIP-Chip data5.6□□□□□ -1.51 RIP-Chip
ROT1YMR200W MLC2Q06580 163 aa5.6□□□□□ -1.51
ROT1YMR200W NTO1Q12311 748 aa5.6□□□□□ -1.51
ROT1YMR200W MDM12Q92328 271 aa5.6□□□□□ -1.51
ROT1YMR200W VPS5Q92331 675 aa5.6□□□□□ -1.51
ROT1YMR200W SPE1P08432 466 aa5.59□□□□□ -1.51
ROT1YMR200W GSY1P23337 708 aa5.59□□□□□ -1.51
ROT1YMR200W VBA3P25594 458 aa5.59□□□□□ -1.51
ROT1YMR200W CHS3P29465 1165 aa5.59□□□□□ -1.51
ROT1YMR200W MCM10P32354 571 aa5.59□□□□□ -1.51
ROT1YMR200W CCC2P38995 1004 aa5.59□□□□□ -1.51
ROT1YMR200W MGS1P40151 587 aa5.59□□□□□ -1.51
ROT1YMR200W TAN1P53072 289 aaPredicted RBP5.59□□□□□ -1.51
ROT1YMR200W DUS3Q06053 668 aaKnown RBP5.59□□□□□ -1.51
ROT1YMR200W SSP2Q08646 371 aa5.59□□□□□ -1.51
ROT1YMR200W PMA1P05030 918 aaKnown RBP5.58□□□□□ -1.52
ROT1YMR200W HOM3P10869 527 aa5.58□□□□□ -1.52
ROT1YMR200W KCC4P25389 1037 aa5.58□□□□□ -1.52
Retrieved 100 of 5,963 RNA–protein pairs in 85.1 ms