RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeast

Gene RTR1, Length 681 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RTR1	YER139C	PBY1	P38254	753 aa		4.22	□□□□□ -1.73
RTR1	YER139C	BCD1	P38772	366 aa		4.22	□□□□□ -1.73
RTR1	YER139C	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	4.22	□□□□□ -1.73	not detected
RTR1	YER139C	HSV2	P50079	448 aa	Predicted RBP	4.22	□□□□□ -1.73
RTR1	YER139C	TEL2	P53038	688 aa		4.22	□□□□□ -1.73
RTR1	YER139C	LAT1	P12695	482 aa	Known RBP	4.21	□□□□□ -1.74
RTR1	YER139C	SPO11	P23179	398 aa		4.21	□□□□□ -1.74
RTR1	YER139C	SAK1	P38990	1142 aa		4.21	□□□□□ -1.74
RTR1	YER139C	YJL206C	P39529	758 aa		4.21	□□□□□ -1.74
RTR1	YER139C	PZF1	P39933	429 aa		4.21	□□□□□ -1.74
RTR1	YER139C	CCT7	P42943	550 aa	Known RBP	4.21	□□□□□ -1.74
RTR1	YER139C	DAM1	P53267	343 aa		4.21	□□□□□ -1.74
RTR1	YER139C	SMX3	P54999	86 aa	Predicted RBP	4.21	□□□□□ -1.74
RTR1	YER139C	APM1	Q00776	475 aa	Predicted RBP	4.21	□□□□□ -1.74
RTR1	YER139C	PIN2	Q12057	282 aa		4.21	□□□□□ -1.74
RTR1	YER139C	TAF3	Q12297	353 aa		4.21	□□□□□ -1.74
RTR1	YER139C	YLR415C	O13578	112 aa		4.2	□□□□□ -1.74
RTR1	YER139C	EMP70	P32802	667 aa		4.2	□□□□□ -1.74
RTR1	YER139C	HOS4	P40480	1083 aa		4.2	□□□□□ -1.74
RTR1	YER139C	PFA3	P42836	336 aa		4.2	□□□□□ -1.74
RTR1	YER139C	MRI1	Q06489	411 aa	Known RBP	4.2	□□□□□ -1.74
RTR1	YER139C	TGL5	Q12043	749 aa		4.2	□□□□□ -1.74
RTR1	YER139C	NGG1	P32494	702 aa		4.19	□□□□□ -1.74
RTR1	YER139C	MAD1	P40957	749 aa		4.19	□□□□□ -1.74
RTR1	YER139C	YOR022C	Q12204	715 aa		4.19	□□□□□ -1.74
RTR1	YER139C	CYS3	P31373	394 aa	Known RBP	4.18	□□□□□ -1.74
RTR1	YER139C	STE5	P32917	917 aa		4.18	□□□□□ -1.74
RTR1	YER139C	SIC1	P38634	284 aa		4.18	□□□□□ -1.74
RTR1	YER139C	IRR1	P40541	1150 aa		4.18	□□□□□ -1.74
RTR1	YER139C	SSY5	P47002	699 aa		4.18	□□□□□ -1.74
RTR1	YER139C	ORC2	P32833	620 aa		4.17	□□□□□ -1.74
RTR1	YER139C	UBC11	P52492	156 aa		4.17	□□□□□ -1.74
RTR1	YER139C	ENV7	Q12003	364 aa		4.17	□□□□□ -1.74
RTR1	YER139C	YPR071W	Q12346	211 aa		4.17	□□□□□ -1.74
RTR1	YER139C	PRP9	P19736	530 aa	Known RBP	4.16	□□□□□ -1.74
RTR1	YER139C	HIR1	P32479	840 aa		4.16	□□□□□ -1.74
RTR1	YER139C	YBR284W	P38150	797 aa		4.16	□□□□□ -1.74
RTR1	YER139C	YEL020C	P39994	560 aa		4.16	□□□□□ -1.74
RTR1	YER139C	PFD1	P46988	109 aa		4.16	□□□□□ -1.74
RTR1	YER139C	NDC80	P40460	691 aa		4.14	□□□□□ -1.75
RTR1	YER139C	YAP1802	P53309	568 aa		4.14	□□□□□ -1.75
RTR1	YER139C	NOG2	P53742	486 aa	Known RBP	4.14	□□□□□ -1.75
RTR1	YER139C	RIM13	Q03792	727 aa		4.14	□□□□□ -1.75
RTR1	YER139C	GPR1	Q12361	961 aa		4.14	□□□□□ -1.75
RTR1	YER139C	PRC1	P00729	532 aa		4.13	□□□□□ -1.75
RTR1	YER139C	DAL7	P21826	554 aa		4.13	□□□□□ -1.75
RTR1	YER139C	GAT1	P43574	510 aa		4.13	□□□□□ -1.75
RTR1	YER139C	ATG11	Q12527	1178 aa		4.13	□□□□□ -1.75
RTR1	YER139C	RPN13	O13563	156 aa		4.12	□□□□□ -1.75
RTR1	YER139C	MSD1	P15179	658 aa	Known RBP	4.12	□□□□□ -1.75
RTR1	YER139C	SPF1	P39986	1215 aa	Known RBP	4.12	□□□□□ -1.75
RTR1	YER139C	BAP3	P41815	604 aa		4.12	□□□□□ -1.75
RTR1	YER139C	ALR2	P43553	858 aa		4.12	□□□□□ -1.75
RTR1	YER139C	SCS3	P53012	380 aa		4.12	□□□□□ -1.75
RTR1	YER139C	LRS4	Q04087	347 aa	Known RBP	4.12	□□□□□ -1.75
RTR1	YER139C	RSC3	Q06639	885 aa		4.12	□□□□□ -1.75
RTR1	YER139C	SIR3	P06701	978 aa		4.11	□□□□□ -1.75
RTR1	YER139C	TOP3	P13099	656 aa		4.11	□□□□□ -1.75
RTR1	YER139C	HOM2	P13663	365 aa	Known RBP	4.11	□□□□□ -1.75
RTR1	YER139C	NAP1	P25293	417 aa	Known RBP	4.11	□□□□□ -1.75
RTR1	YER139C	YCL002C	P25565	263 aa		4.11	□□□□□ -1.75
RTR1	YER139C	CDC11	P32458	415 aa		4.11	□□□□□ -1.75
RTR1	YER139C	PET10	P36139	283 aa		4.11	□□□□□ -1.75
RTR1	YER139C	UBS1	P38290	277 aa		4.11	□□□□□ -1.75
RTR1	YER139C	YBR184W	P38299	523 aa		4.11	□□□□□ -1.75
RTR1	YER139C	BDH2	P39713	417 aa		4.11	□□□□□ -1.75
RTR1	YER139C	TAD1	P53065	400 aa		4.11	□□□□□ -1.75
RTR1	YER139C	JIP5	Q06214	492 aa	Predicted RBP	4.11	□□□□□ -1.75
RTR1	YER139C	PYC1	P11154	1178 aa	Known RBP	4.1	□□□□□ -1.75
RTR1	YER139C	REV7	P38927	245 aa		4.1	□□□□□ -1.75
RTR1	YER139C	NIT3	P49954	291 aa		4.1	□□□□□ -1.75
RTR1	YER139C	TEX1	P53851	422 aa	Known RBP	4.1	□□□□□ -1.75
RTR1	YER139C	OSW1	Q08692	278 aa		4.1	□□□□□ -1.75
RTR1	YER139C	SEG1	Q04279	960 aa		4.09	□□□□□ -1.75
RTR1	YER139C	TDA5	Q06417	326 aa	Known RBP	4.09	□□□□□ -1.75
RTR1	YER139C	THI21	Q08975	551 aa		4.09	□□□□□ -1.75
RTR1	YER139C	YKL033W-A	Q86ZR7	236 aa		4.09	□□□□□ -1.75
RTR1	YER139C	VPS34	P22543	875 aa		4.08	□□□□□ -1.76
RTR1	YER139C	SAP190	P36123	1033 aa		4.08	□□□□□ -1.76
RTR1	YER139C	GLG1	P36143	616 aa		4.08	□□□□□ -1.76
RTR1	YER139C	CCT3	P39077	534 aa	Known RBP	4.08	□□□□□ -1.76
RTR1	YER139C	ARG2	P40360	574 aa		4.08	□□□□□ -1.76
RTR1	YER139C	PAN2	P53010	1115 aa	Predicted RBP	4.08	□□□□□ -1.76
RTR1	YER139C	GAD1	Q04792	585 aa		4.08	□□□□□ -1.76
RTR1	YER139C	UBX5	Q06682	500 aa		4.08	□□□□□ -1.76
RTR1	YER139C	HBN1	Q96VH4	193 aa		4.08	□□□□□ -1.76
RTR1	YER139C	YBR259W	P38338	688 aa		4.07	□□□□□ -1.76
RTR1	YER139C	PAC2	P39937	518 aa		4.07	□□□□□ -1.76
RTR1	YER139C	VAC8	P39968	578 aa		4.07	□□□□□ -1.76
RTR1	YER139C	CTR1	P49573	406 aa		4.07	□□□□□ -1.76
RTR1	YER139C	FMP25	Q08023	583 aa		4.07	□□□□□ -1.76
RTR1	YER139C	EMC3	P36039	253 aa		4.06	□□□□□ -1.76
RTR1	YER139C	SFB3	P38810	929 aa		4.06	□□□□□ -1.76
RTR1	YER139C	BNA3	P47039	444 aa	Known RBP	4.06	□□□□□ -1.76
RTR1	YER139C	MTR3	P48240	250 aa	Predicted RBP	4.06	□□□□□ -1.76
RTR1	YER139C	UBC9	P50623	157 aa	Predicted RBP	4.06	□□□□□ -1.76
RTR1	YER139C	FMO1	P38866	432 aa		4.05	□□□□□ -1.76
RTR1	YER139C	SET5	P38890	526 aa	Known RBP	4.05	□□□□□ -1.76
RTR1	YER139C	HRB1	P38922	454 aa	Known RBP RIP-Chip data	4.05	□□□□□ -1.76	not detected
RTR1	YER139C	GYP8	P43570	497 aa		4.05	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 49.5 ms