RNA–Protein interactions for RNA: YDR049W

VMS1, Transcript of Component of a Cdc48p-complex involved in protein quality control, yeastyeast

Gene VMS1, Length 1,899 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VMS1YDR049W CTM1P38818 585 aa6.22□□□□□ -1.41
VMS1YDR049W ARB1P40024 610 aaKnown RBP6.22□□□□□ -1.41
VMS1YDR049W KHA1P40309 873 aa6.22□□□□□ -1.41
VMS1YDR049W DPH1P40487 425 aaKnown RBP6.22□□□□□ -1.41
VMS1YDR049W SEC28P40509 296 aaKnown RBP6.22□□□□□ -1.41
VMS1YDR049W UBP6P43593 499 aaKnown RBP6.22□□□□□ -1.41
VMS1YDR049W YPL071CQ02864 156 aa6.22□□□□□ -1.41
VMS1YDR049W PEX25Q02969 394 aa6.22□□□□□ -1.41
VMS1YDR049W DPB4Q04603 196 aaKnown RBP6.22□□□□□ -1.41
VMS1YDR049W PHO92Q06390 306 aa6.22□□□□□ -1.41
VMS1YDR049W GUD1Q07729 489 aa6.22□□□□□ -1.41
VMS1YDR049W ISU2Q12056 156 aa6.22□□□□□ -1.41
VMS1YDR049W PHM7Q12252 991 aa6.22□□□□□ -1.41
VMS1YDR049W PAR32Q12515 295 aaKnown RBP6.22□□□□□ -1.41
VMS1YDR049W HSF1P10961 833 aa6.21□□□□□ -1.42
VMS1YDR049W KAR3P17119 729 aa6.21□□□□□ -1.42
VMS1YDR049W MSH1P25846 959 aa6.21□□□□□ -1.42
VMS1YDR049W NAM7P30771 971 aaKnown RBP6.21□□□□□ -1.42
VMS1YDR049W YKU70P32807 602 aa6.21□□□□□ -1.42
VMS1YDR049W VTC4P47075 721 aa6.21□□□□□ -1.42
VMS1YDR049W NUP84P52891 726 aa6.21□□□□□ -1.42
VMS1YDR049W MOT3P54785 490 aaKnown RBP6.21□□□□□ -1.42
VMS1YDR049W CEG1Q01159 459 aaPredicted RBP6.21□□□□□ -1.42
VMS1YDR049W SFI1Q12369 946 aa6.21□□□□□ -1.42
VMS1YDR049W NTG1P31378 399 aa6.2□□□□□ -1.42
VMS1YDR049W ERG3P32353 365 aa6.2□□□□□ -1.42
VMS1YDR049W SLC1P33333 303 aa6.2□□□□□ -1.42
VMS1YDR049W MCD4P36051 919 aa6.2□□□□□ -1.42
VMS1YDR049W SHM2P37291 469 aaKnown RBP6.2□□□□□ -1.42
VMS1YDR049W ECM2P38241 364 aaKnown RBP6.2□□□□□ -1.42
VMS1YDR049W HXT13P39924 564 aa6.2□□□□□ -1.42
VMS1YDR049W SMK1P41808 388 aa6.2□□□□□ -1.42
VMS1YDR049W CIR1P42940 261 aa6.2□□□□□ -1.42
VMS1YDR049W CCT7P42943 550 aaKnown RBP6.2□□□□□ -1.42
VMS1YDR049W ENT3P47160 408 aa6.2□□□□□ -1.42
VMS1YDR049W HXT17P53631 564 aa6.2□□□□□ -1.42
VMS1YDR049W HXT15P54854 567 aa6.2□□□□□ -1.42
VMS1YDR049W SSL2Q00578 843 aa6.2□□□□□ -1.42
VMS1YDR049W RRN5Q02983 363 aa6.2□□□□□ -1.42
VMS1YDR049W HAS1Q03532 505 aaKnown RBP6.2□□□□□ -1.42
VMS1YDR049W YDR131CQ03899 556 aa6.2□□□□□ -1.42
VMS1YDR049W HDA2Q06629 674 aa6.2□□□□□ -1.42
VMS1YDR049W VHS3Q08438 674 aa6.2□□□□□ -1.42
VMS1YDR049W BMS1Q08965 1183 aaKnown RBP6.2□□□□□ -1.42
VMS1YDR049W ISA2Q12425 185 aa6.2□□□□□ -1.42
VMS1YDR049W OM45P16547 393 aa6.19□□□□□ -1.42
VMS1YDR049W RSC6P25632 483 aa6.19□□□□□ -1.42
VMS1YDR049W IRE1P32361 1115 aa6.19□□□□□ -1.42
VMS1YDR049W XRS2P33301 854 aa6.19□□□□□ -1.42
VMS1YDR049W UIP5P36137 443 aa6.19□□□□□ -1.42
VMS1YDR049W CCZ1P38273 704 aa6.19□□□□□ -1.42
VMS1YDR049W PEX18P38855 283 aa6.19□□□□□ -1.42
VMS1YDR049W RGA1P39083 1007 aa6.19□□□□□ -1.42
VMS1YDR049W NTA1P40354 457 aa6.19□□□□□ -1.42
VMS1YDR049W ECM38Q05902 660 aaPredicted RBP6.19□□□□□ -1.42
VMS1YDR049W KEL3Q08979 651 aaPredicted RBP6.19□□□□□ -1.42
VMS1YDR049W RVB2Q12464 471 aaKnown RBP6.19□□□□□ -1.42
VMS1YDR049W RPB2P08518 1224 aaKnown RBP6.19□□□□□ -1.42
VMS1YDR049W HOM2P13663 365 aaKnown RBP6.19□□□□□ -1.42
VMS1YDR049W CKA1P15790 372 aa6.19□□□□□ -1.42
VMS1YDR049W PRP28P23394 588 aa6.19□□□□□ -1.42
VMS1YDR049W LCB1P25045 558 aaKnown RBP6.19□□□□□ -1.42
VMS1YDR049W MLS1P30952 554 aa6.19□□□□□ -1.42
VMS1YDR049W DOM34P33309 386 aa6.19□□□□□ -1.42
VMS1YDR049W DID4P36108 232 aa6.19□□□□□ -1.42
VMS1YDR049W IRS4P36115 615 aaKnown RBP6.19□□□□□ -1.42
VMS1YDR049W YBL028CP38202 106 aa6.19□□□□□ -1.42
VMS1YDR049W MBP1P39678 833 aa6.19□□□□□ -1.42
VMS1YDR049W FUN12P39730 1002 aaKnown RBP6.19□□□□□ -1.42
VMS1YDR049W GDI1P39958 451 aaKnown RBP6.19□□□□□ -1.42
VMS1YDR049W YIL161WP40449 235 aaKnown RBP6.19□□□□□ -1.42
VMS1YDR049W RGD2P43556 714 aa6.19□□□□□ -1.42
VMS1YDR049W PSP2P50109 593 aaKnown RBP6.19□□□□□ -1.42
VMS1YDR049W MON1P53129 644 aa6.19□□□□□ -1.42
VMS1YDR049W TEP1P53916 434 aa6.19□□□□□ -1.42
VMS1YDR049W CIK1Q01649 594 aa6.19□□□□□ -1.42
VMS1YDR049W TIF6Q12522 245 aaKnown RBP6.19□□□□□ -1.42
VMS1YDR049W PRT1P06103 763 aaKnown RBP6.18□□□□□ -1.42
VMS1YDR049W CDC16P09798 840 aa6.18□□□□□ -1.42
VMS1YDR049W INO1P11986 533 aa6.18□□□□□ -1.42
VMS1YDR049W PFK2P16862 959 aaKnown RBP RIP-Chip data6.18□□□□□ -1.42not detected
VMS1YDR049W THR1P17423 357 aaKnown RBP6.18□□□□□ -1.42
VMS1YDR049W VMA3P25515 160 aa6.18□□□□□ -1.42
VMS1YDR049W PUP2P32379 260 aa6.18□□□□□ -1.42
VMS1YDR049W SSE1P32589 693 aaKnown RBP6.18□□□□□ -1.42
VMS1YDR049W PIN4P34217 668 aaKnown RBP RIP-Chip data6.18□□□□□ -1.42not detected
VMS1YDR049W YBR284WP38150 797 aa6.18□□□□□ -1.42
VMS1YDR049W YBR225WP38321 900 aa6.18□□□□□ -1.42
VMS1YDR049W PCM1P38628 557 aaKnown RBP6.18□□□□□ -1.42
VMS1YDR049W PAN5P38787 379 aa6.18□□□□□ -1.42
VMS1YDR049W ZIM17P42844 174 aa6.18□□□□□ -1.42
VMS1YDR049W SAP155P43612 1002 aa6.18□□□□□ -1.42
VMS1YDR049W AIP1P46680 615 aaKnown RBP6.18□□□□□ -1.42
VMS1YDR049W CCM1P48237 864 aaPredicted RBP6.18□□□□□ -1.42
VMS1YDR049W ARE2P53629 642 aaKnown RBP6.18□□□□□ -1.42
VMS1YDR049W SKY1Q03656 742 aa6.18□□□□□ -1.42
VMS1YDR049W AGE1Q04412 482 aa6.18□□□□□ -1.42
VMS1YDR049W MFB1Q04922 465 aa6.18□□□□□ -1.42
VMS1YDR049W YLR345WQ06137 509 aa6.18□□□□□ -1.42
VMS1YDR049W POT1P27796 417 aaKnown RBP RIP-Chip data6.17□□□□□ -1.42not detected
Retrieved 100 of 5,963 RNA–protein pairs in 53.8 ms