RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 SURF6O75683 361 aaKnown RBP17.51■□□□□ 0.39
CLN3-242ENST00000635958 PTPN12Q05209 780 aaKnown RBP17.51■□□□□ 0.39
CLN3-242ENST00000635958 ERFEQ4G0M1 354 aa17.51■□□□□ 0.39
CLN3-242ENST00000635958 NUTM1Q86Y26 1132 aa17.51■□□□□ 0.39
CLN3-242ENST00000635958 HCLS1P14317 486 aaPredicted RBP17.5■□□□□ 0.39
CLN3-242ENST00000635958 ANKRD45Q5TZF3 282 aa17.5■□□□□ 0.39
CLN3-242ENST00000635958 CHD1LQ86WJ1 897 aa17.5■□□□□ 0.39
CLN3-242ENST00000635958 EXOC6BQ9Y2D4 811 aa17.5■□□□□ 0.39
CLN3-242ENST00000635958 MYH3P11055 1940 aa17.49■□□□□ 0.39
CLN3-242ENST00000635958 DDX60Q8IY21 1712 aaKnown RBP17.49■□□□□ 0.39
CLN3-242ENST00000635958 PA2G4Q9UQ80 394 aaKnown RBP17.49■□□□□ 0.39
CLN3-242ENST00000635958 LAMB2P55268 1798 aa17.48■□□□□ 0.39
CLN3-242ENST00000635958 POLRMTO00411 1230 aaKnown RBP17.48■□□□□ 0.39
CLN3-242ENST00000635958 GTF2E1P29083 439 aaPredicted RBP17.48■□□□□ 0.39
CLN3-242ENST00000635958 SF3B3Q15393 1217 aaKnown RBP17.48■□□□□ 0.39
CLN3-242ENST00000635958 RTL9Q8NET4 1388 aa17.48■□□□□ 0.39
CLN3-242ENST00000635958 SERPINB2P05120 415 aa17.47■□□□□ 0.39
CLN3-242ENST00000635958 DDR1Q08345 913 aa17.47■□□□□ 0.39
CLN3-242ENST00000635958 CCDC57Q2TAC2 916 aa17.47■□□□□ 0.39
CLN3-242ENST00000635958 FBXO3Q9UK99 471 aa17.47■□□□□ 0.39
CLN3-242ENST00000635958 RIC1Q4ADV7 1423 aa17.47■□□□□ 0.39
CLN3-242ENST00000635958 IFIT5Q13325 482 aaKnown RBP17.47■□□□□ 0.39
CLN3-242ENST00000635958 FAM161AQ3B820 660 aa17.47■□□□□ 0.39
CLN3-242ENST00000635958 ERC1Q8IUD2 1116 aa17.47■□□□□ 0.39
CLN3-242ENST00000635958 LRRCC1Q9C099 1032 aa17.47■□□□□ 0.39
CLN3-242ENST00000635958 GREM2Q9H772 168 aa17.47■□□□□ 0.39
CLN3-242ENST00000635958 CHMP3Q9Y3E7 222 aa17.47■□□□□ 0.39
CLN3-242ENST00000635958 ABCC12Q96J65 1359 aa17.47■□□□□ 0.39
CLN3-242ENST00000635958 G3BP1Q13283 466 aaKnown RBP eCLIP17.46■□□□□ 0.39
CLN3-242ENST00000635958 CCDC152Q4G0S7 254 aa17.46■□□□□ 0.39
CLN3-242ENST00000635958 PRR5LQ6MZQ0 368 aa17.46■□□□□ 0.39
CLN3-242ENST00000635958 CNBD1Q8NA66 436 aa17.46■□□□□ 0.39
CLN3-242ENST00000635958 KLHDC4Q8TBB5 520 aa17.46■□□□□ 0.39
CLN3-242ENST00000635958 KIF1BPQ96EK5 621 aa17.46■□□□□ 0.39
CLN3-242ENST00000635958 LNPKQ9C0E8 428 aa17.46■□□□□ 0.39
CLN3-242ENST00000635958 ITGA6P23229 1130 aa17.45■□□□□ 0.38
CLN3-242ENST00000635958 RHPN1Q8TCX5 695 aa17.45■□□□□ 0.38
CLN3-242ENST00000635958 SLC16A10Q8TF71 515 aa17.45■□□□□ 0.38
CLN3-242ENST00000635958 ANKRD18BA2A2Z9 1011 aa17.44■□□□□ 0.38
CLN3-242ENST00000635958 CIAO1O76071 339 aa17.44■□□□□ 0.38
CLN3-242ENST00000635958 SKAP1Q86WV1 359 aa17.44■□□□□ 0.38
CLN3-242ENST00000635958 NLRP3Q96P20 1036 aa17.44■□□□□ 0.38
CLN3-242ENST00000635958 SASH1O94885 1247 aa17.44■□□□□ 0.38
CLN3-242ENST00000635958 NRXN2Q9P2S2 1712 aa17.43■□□□□ 0.38
CLN3-242ENST00000635958 PSDA5PKW4 1024 aaPredicted RBP17.43■□□□□ 0.38
CLN3-242ENST00000635958 EYA2O00167 538 aa17.43■□□□□ 0.38
CLN3-242ENST00000635958 APBB1O00213 710 aa17.43■□□□□ 0.38
CLN3-242ENST00000635958 SMARCA5O60264 1052 aaPredicted RBP17.43■□□□□ 0.38
CLN3-242ENST00000635958 C3orf67Q6ZVT6 689 aa17.43■□□□□ 0.38
CLN3-242ENST00000635958 ATG9AQ7Z3C6 839 aa17.43■□□□□ 0.38
CLN3-242ENST00000635958 CCDC85AQ96PX6 553 aaPredicted RBP17.43■□□□□ 0.38
CLN3-242ENST00000635958 MMP10P09238 476 aa17.42■□□□□ 0.38
CLN3-242ENST00000635958 OS9Q13438 667 aaPredicted RBP17.42■□□□□ 0.38
CLN3-242ENST00000635958 ZNF594Q96JF6 807 aaPredicted RBP17.42■□□□□ 0.38
CLN3-242ENST00000635958 SIL1Q9H173 461 aa17.42■□□□□ 0.38
CLN3-242ENST00000635958 KLRG2A4D1S0 409 aaPredicted RBP17.42■□□□□ 0.38
CLN3-242ENST00000635958 IL15P40933 162 aaPredicted RBP17.42■□□□□ 0.38
CLN3-242ENST00000635958 ST5P78524 1137 aa17.42■□□□□ 0.38
CLN3-242ENST00000635958 PARP3Q9Y6F1 533 aa17.42■□□□□ 0.38
CLN3-242ENST00000635958 NPHP1O15259 732 aa17.41■□□□□ 0.38
CLN3-242ENST00000635958 PDGFDQ9GZP0 370 aaPredicted RBP17.41■□□□□ 0.38
CLN3-242ENST00000635958 RIPOR2Q9Y4F9 1068 aa17.41■□□□□ 0.38
CLN3-242ENST00000635958 RGS3P49796 1198 aa17.4■□□□□ 0.38
CLN3-242ENST00000635958 CRY2Q49AN0 593 aa17.4■□□□□ 0.38
CLN3-242ENST00000635958 TAF7LQ5H9L4 462 aa17.4■□□□□ 0.38
CLN3-242ENST00000635958 C16orf71Q8IYS4 520 aaPredicted RBP17.4■□□□□ 0.38
CLN3-242ENST00000635958 CCDC24Q8N4L8 307 aa17.4■□□□□ 0.38
CLN3-242ENST00000635958 PUS3Q9BZE2 481 aaKnown RBP17.4■□□□□ 0.38
CLN3-242ENST00000635958 SEC31BQ9NQW1 1179 aa17.4■□□□□ 0.38
CLN3-242ENST00000635958 R3HDM1Q15032 1099 aaKnown RBP17.4■□□□□ 0.38
CLN3-242ENST00000635958 LRRC24Q50LG9 513 aa17.4■□□□□ 0.38
CLN3-242ENST00000635958 MSL1Q68DK7 614 aa17.4■□□□□ 0.38
CLN3-242ENST00000635958 BRIP1Q9BX63 1249 aa17.4■□□□□ 0.38
CLN3-242ENST00000635958 IL1RAPL2Q9NP60 686 aa17.4■□□□□ 0.38
CLN3-242ENST00000635958 SALL3Q9BXA9 1300 aa17.39■□□□□ 0.37
CLN3-242ENST00000635958 NBR1Q14596 966 aa17.39■□□□□ 0.37
CLN3-242ENST00000635958 LDHAL6AQ6ZMR3 332 aa17.39■□□□□ 0.37
CLN3-242ENST00000635958 PLEKHM2Q8IWE5 1019 aa17.39■□□□□ 0.37
CLN3-242ENST00000635958 CLASRPQ8N2M8 674 aaKnown RBP17.39■□□□□ 0.37
CLN3-242ENST00000635958 CDC5LQ99459 802 aaKnown RBP17.39■□□□□ 0.37
CLN3-242ENST00000635958 GPR108Q9NPR9 543 aa17.39■□□□□ 0.37
CLN3-242ENST00000635958 OSBPL3Q9H4L5 887 aa17.38■□□□□ 0.37
CLN3-242ENST00000635958 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.38■□□□□ 0.37
CLN3-242ENST00000635958 LRP5O75197 1615 aa17.38■□□□□ 0.37
CLN3-242ENST00000635958 TFCP2Q12800 502 aa17.37■□□□□ 0.37
CLN3-242ENST00000635958 TNRC6CQ9HCJ0 1690 aaKnown RBP17.37■□□□□ 0.37
CLN3-242ENST00000635958 CASZ1Q86V15 1759 aa17.37■□□□□ 0.37
CLN3-242ENST00000635958 OTUD7AQ8TE49 926 aaPredicted RBP17.37■□□□□ 0.37
CLN3-242ENST00000635958 STAP2Q9UGK3 403 aa17.37■□□□□ 0.37
CLN3-242ENST00000635958 HOXA10P31260 410 aaPredicted RBP17.36■□□□□ 0.37
CLN3-242ENST00000635958 IGHMBP2P38935 993 aaKnown RBP17.36■□□□□ 0.37
CLN3-242ENST00000635958 EAF2Q96CJ1 260 aaPredicted RBP17.36■□□□□ 0.37
CLN3-242ENST00000635958 CEP126Q9P2H0 1117 aa17.36■□□□□ 0.37
CLN3-242ENST00000635958 RPS8P62241 208 aaKnown RBP17.35■□□□□ 0.37
CLN3-242ENST00000635958 DDX46Q7L014 1031 aaKnown RBP17.35■□□□□ 0.37
CLN3-242ENST00000635958 ANKRD18AQ8IVF6 992 aa17.35■□□□□ 0.37
CLN3-242ENST00000635958 MPHOSPH8Q99549 860 aa17.35■□□□□ 0.37
CLN3-242ENST00000635958 CNNM1Q9NRU3 951 aa17.35■□□□□ 0.37
CLN3-242ENST00000635958 BSDC1Q9NW68 430 aaPredicted RBP17.35■□□□□ 0.37
CLN3-242ENST00000635958 PDE1AP54750 535 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms