RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 VPS33BQ9H267 617 aa10.3□□□□□ -0.76
CLK1-215ENST00000621181 ZNRF3Q9ULT6 936 aa10.3□□□□□ -0.76
CLK1-215ENST00000621181 ATP6V0A2Q9Y487 856 aa10.3□□□□□ -0.76
CLK1-215ENST00000621181 ERBB4Q15303 1308 aa10.29□□□□□ -0.76
CLK1-215ENST00000621181 MAPK8IP3Q9UPT6 1336 aa10.29□□□□□ -0.76
CLK1-215ENST00000621181 CELF2O95319 508 aaKnown RBP10.29□□□□□ -0.76
CLK1-215ENST00000621181 EIF2S2P20042 333 aaKnown RBP10.29□□□□□ -0.76
CLK1-215ENST00000621181 MAP2K2P36507 400 aa10.29□□□□□ -0.76
CLK1-215ENST00000621181 CXCL9Q07325 125 aa10.29□□□□□ -0.76
CLK1-215ENST00000621181 NFE2L2Q16236 605 aa10.29□□□□□ -0.76
CLK1-215ENST00000621181 SAPCD2Q86UD0 394 aa10.29□□□□□ -0.76
CLK1-215ENST00000621181 ZNF408Q9H9D4 720 aa10.29□□□□□ -0.76
CLK1-215ENST00000621181 TSPYL4Q9UJ04 414 aa10.29□□□□□ -0.76
CLK1-215ENST00000621181 TSKSQ9UJT2 592 aa10.29□□□□□ -0.76
CLK1-215ENST00000621181 THSD7BQ9C0I4 1608 aa10.29□□□□□ -0.76
CLK1-215ENST00000621181 ABCC4O15439 1325 aa10.29□□□□□ -0.76
CLK1-215ENST00000621181 AOC2O75106 756 aa10.28□□□□□ -0.76
CLK1-215ENST00000621181 DPP8Q6V1X1 898 aaPredicted RBP10.28□□□□□ -0.76
CLK1-215ENST00000621181 PLEKHF1Q96S99 279 aa10.28□□□□□ -0.76
CLK1-215ENST00000621181 BCL2L13Q9BXK5 485 aa10.28□□□□□ -0.76
CLK1-215ENST00000621181 PNNQ9H307 717 aaKnown RBP10.28□□□□□ -0.76
CLK1-215ENST00000621181 CA12O43570 354 aa10.28□□□□□ -0.76
CLK1-215ENST00000621181 GMPSP49915 693 aaPredicted RBP10.28□□□□□ -0.76
CLK1-215ENST00000621181 CIAPIN1Q6FI81 312 aa10.28□□□□□ -0.76
CLK1-215ENST00000621181 BBOX1O75936 387 aa10.27□□□□□ -0.77
CLK1-215ENST00000621181 RAD17O75943 681 aa10.27□□□□□ -0.77
CLK1-215ENST00000621181 MLLT1Q03111 559 aaPredicted RBP10.27□□□□□ -0.77
CLK1-215ENST00000621181 TNIP1Q15025 636 aa10.27□□□□□ -0.77
CLK1-215ENST00000621181 MPNDQ8N594 471 aa10.27□□□□□ -0.77
CLK1-215ENST00000621181 RTFDC1Q9BY42 306 aaPredicted RBP10.27□□□□□ -0.77
CLK1-215ENST00000621181 GLIS2Q9BZE0 524 aaPredicted RBP10.27□□□□□ -0.77
CLK1-215ENST00000621181 CDHR2Q9BYE9 1310 aa10.27□□□□□ -0.77
CLK1-215ENST00000621181 ANXA1P04083 346 aa10.26□□□□□ -0.77
CLK1-215ENST00000621181 HCLS1P14317 486 aaPredicted RBP10.26□□□□□ -0.77
CLK1-215ENST00000621181 KIAA2012Q0VF49 1180 aa10.26□□□□□ -0.77
CLK1-215ENST00000621181 AIMP1Q12904 312 aaKnown RBP10.26□□□□□ -0.77
CLK1-215ENST00000621181 SLC10A5Q5PT55 438 aa10.26□□□□□ -0.77
CLK1-215ENST00000621181 DDX46Q7L014 1031 aaKnown RBP10.26□□□□□ -0.77
CLK1-215ENST00000621181 SP8Q8IXZ3 490 aa10.26□□□□□ -0.77
CLK1-215ENST00000621181 HHIPL1Q96JK4 782 aa10.26□□□□□ -0.77
CLK1-215ENST00000621181 CFAP44Q96MT7 982 aa10.26□□□□□ -0.77
CLK1-215ENST00000621181 BRPF1P55201 1214 aaPredicted RBP10.26□□□□□ -0.77
CLK1-215ENST00000621181 PROSER3Q2NL68 480 aa10.26□□□□□ -0.77
CLK1-215ENST00000621181 HSP90AB3PQ58FF7 597 aa10.26□□□□□ -0.77
CLK1-215ENST00000621181 CDC37L1Q7L3B6 337 aa10.26□□□□□ -0.77
CLK1-215ENST00000621181 LRP10Q7Z4F1 713 aa10.26□□□□□ -0.77
CLK1-215ENST00000621181 ZC3H15Q8WU90 426 aaKnown RBP10.26□□□□□ -0.77
CLK1-215ENST00000621181 TRMT112Q9UI30 125 aaKnown RBP10.26□□□□□ -0.77
CLK1-215ENST00000621181 CASP8AP2Q9UKL3 1982 aa10.25□□□□□ -0.77
CLK1-215ENST00000621181 H7C1D1 291 aa10.25□□□□□ -0.77
CLK1-215ENST00000621181 PDIA6Q15084 440 aa10.25□□□□□ -0.77
CLK1-215ENST00000621181 COPS6Q7L5N1 327 aa10.25□□□□□ -0.77
CLK1-215ENST00000621181 NECTIN2Q92692 538 aa10.25□□□□□ -0.77
CLK1-215ENST00000621181 CNOT7Q9UIV1 285 aaKnown RBP10.25□□□□□ -0.77
CLK1-215ENST00000621181 SH3TC1Q8TE82 1336 aa10.25□□□□□ -0.77
CLK1-215ENST00000621181 SLC34A2O95436 690 aa10.24□□□□□ -0.77
CLK1-215ENST00000621181 HIRAP54198 1017 aaPredicted RBP10.24□□□□□ -0.77
CLK1-215ENST00000621181 RIPK4P57078 832 aa10.24□□□□□ -0.77
CLK1-215ENST00000621181 GRAPQ13588 217 aa10.24□□□□□ -0.77
CLK1-215ENST00000621181 NLRP10Q86W26 655 aa10.24□□□□□ -0.77
CLK1-215ENST00000621181 MICALL2Q8IY33 904 aa10.24□□□□□ -0.77
CLK1-215ENST00000621181 GRAPLQ8TC17 118 aaPredicted RBP10.24□□□□□ -0.77
CLK1-215ENST00000621181 TRPM4Q8TD43 1214 aa10.24□□□□□ -0.77
CLK1-215ENST00000621181 PGAP2Q9UHJ9 254 aa10.24□□□□□ -0.77
CLK1-215ENST00000621181 ANKRD36CQ5JPF3 1778 aa10.24□□□□□ -0.77
CLK1-215ENST00000621181 NOGQ13253 232 aa10.23□□□□□ -0.77
CLK1-215ENST00000621181 XAGE3Q8WTP9 111 aa10.23□□□□□ -0.77
CLK1-215ENST00000621181 ZNF428Q96B54 188 aa10.23□□□□□ -0.77
CLK1-215ENST00000621181 MCOLN1Q9GZU1 580 aa10.23□□□□□ -0.77
CLK1-215ENST00000621181 LAMB2P55268 1798 aa10.23□□□□□ -0.77
CLK1-215ENST00000621181 SHTN1A0MZ66 631 aa10.23□□□□□ -0.77
CLK1-215ENST00000621181 YDJCA8MPS7 323 aa10.23□□□□□ -0.77
CLK1-215ENST00000621181 HUNKP57058 714 aa10.23□□□□□ -0.77
CLK1-215ENST00000621181 LMOD3Q0VAK6 560 aa10.23□□□□□ -0.77
CLK1-215ENST00000621181 TCIRG1Q13488 830 aa10.23□□□□□ -0.77
CLK1-215ENST00000621181 WASHC4Q2M389 1173 aa10.23□□□□□ -0.77
CLK1-215ENST00000621181 TMC4Q7Z404 712 aa10.23□□□□□ -0.77
CLK1-215ENST00000621181 TAF1P21675 1872 aa10.22□□□□□ -0.77
CLK1-215ENST00000621181 RGS19P49795 217 aa10.22□□□□□ -0.77
CLK1-215ENST00000621181 DGKZQ13574 1117 aa10.22□□□□□ -0.77
CLK1-215ENST00000621181 BABAM1Q9NWV8 329 aa10.22□□□□□ -0.77
CLK1-215ENST00000621181 NSFL1CQ9UNZ2 370 aaKnown RBP10.22□□□□□ -0.77
CLK1-215ENST00000621181 PSMD14O00487 310 aa10.21□□□□□ -0.77
CLK1-215ENST00000621181 SAMD7Q7Z3H4 446 aa10.21□□□□□ -0.77
CLK1-215ENST00000621181 KRT26Q7Z3Y9 468 aa10.21□□□□□ -0.77
CLK1-215ENST00000621181 USP48Q86UV5 1035 aa10.21□□□□□ -0.77
CLK1-215ENST00000621181 DBNDD1Q9H9R9 158 aa10.21□□□□□ -0.77
CLK1-215ENST00000621181 C6orf229H3BNL8 230 aa10.21□□□□□ -0.78
CLK1-215ENST00000621181 DPF2Q92785 391 aa10.21□□□□□ -0.78
CLK1-215ENST00000621181 DUOX1Q9NRD9 1551 aa10.2□□□□□ -0.78
CLK1-215ENST00000621181 RIMBP2O15034 1052 aa10.2□□□□□ -0.78
CLK1-215ENST00000621181 TMPOP42166 694 aaKnown RBP10.2□□□□□ -0.78
CLK1-215ENST00000621181 NEUROD2Q15784 382 aa10.2□□□□□ -0.78
CLK1-215ENST00000621181 TBC1D10BQ4KMP7 808 aaPredicted RBP10.2□□□□□ -0.78
CLK1-215ENST00000621181 DLK2Q6UY11 383 aa10.2□□□□□ -0.78
CLK1-215ENST00000621181 C2orf69Q8N8R5 385 aa10.2□□□□□ -0.78
CLK1-215ENST00000621181 DCPSQ96C86 337 aaKnown RBP10.2□□□□□ -0.78
CLK1-215ENST00000621181 FAM89AQ96GI7 184 aa10.2□□□□□ -0.78
CLK1-215ENST00000621181 ZIC5Q96T25 663 aa10.2□□□□□ -0.78
CLK1-215ENST00000621181 GBA2Q9HCG7 927 aaPredicted RBP10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms