RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 ATP2B3Q16720 1220 aa14.73□□□□□ -0.05
LIG1-221ENST00000613670 COPS6Q7L5N1 327 aa14.73□□□□□ -0.05
LIG1-221ENST00000613670 CHMP4CQ96CF2 233 aa14.73□□□□□ -0.05
LIG1-221ENST00000613670 SUCLG2Q96I99 432 aa14.73□□□□□ -0.05
LIG1-221ENST00000613670 PLEKHG3A1L390 1219 aa14.73□□□□□ -0.05
LIG1-221ENST00000613670 URI1O94763 535 aaPredicted RBP14.73□□□□□ -0.05
LIG1-221ENST00000613670 NAA30Q147X3 362 aaPredicted RBP14.73□□□□□ -0.05
LIG1-221ENST00000613670 TTLL5Q6EMB2 1281 aa14.73□□□□□ -0.05
LIG1-221ENST00000613670 LINS1Q8NG48 757 aa14.73□□□□□ -0.05
LIG1-221ENST00000613670 HMG20BQ9P0W2 317 aa14.73□□□□□ -0.05
LIG1-221ENST00000613670 SNW1Q13573 536 aaKnown RBP14.72□□□□□ -0.05
LIG1-221ENST00000613670 XAGE3Q8WTP9 111 aa14.72□□□□□ -0.05
LIG1-221ENST00000613670 UBXN4Q92575 508 aa14.72□□□□□ -0.05
LIG1-221ENST00000613670 TLR7Q9NYK1 1049 aaKnown RBP14.72□□□□□ -0.05
LIG1-221ENST00000613670 ALDH1L1O75891 902 aa14.72□□□□□ -0.05
LIG1-221ENST00000613670 TTC14Q96N46 770 aa14.72□□□□□ -0.05
LIG1-221ENST00000613670 POLR3GO15318 223 aaPredicted RBP14.72□□□□□ -0.05
LIG1-221ENST00000613670 CTAGE5O15320 804 aa14.72□□□□□ -0.05
LIG1-221ENST00000613670 OLFM4Q6UX06 510 aa14.72□□□□□ -0.05
LIG1-221ENST00000613670 C8orf76Q96K31 380 aa14.72□□□□□ -0.05
LIG1-221ENST00000613670 GTPBP4Q9BZE4 634 aaKnown RBP14.72□□□□□ -0.05
LIG1-221ENST00000613670 TM6SF1Q9BZW5 370 aa14.72□□□□□ -0.05
LIG1-221ENST00000613670 ZSCAN16Q9H4T2 348 aaPredicted RBP14.72□□□□□ -0.05
LIG1-221ENST00000613670 ARHGEF40Q8TER5 1519 aa14.71□□□□□ -0.05
LIG1-221ENST00000613670 CD163L1Q9NR16 1453 aa14.71□□□□□ -0.05
LIG1-221ENST00000613670 CCDC66A2RUB6 948 aa14.71□□□□□ -0.05
LIG1-221ENST00000613670 PROSER3Q2NL68 480 aa14.71□□□□□ -0.05
LIG1-221ENST00000613670 SEC62Q99442 399 aaKnown RBP14.71□□□□□ -0.05
LIG1-221ENST00000613670 A0A1B0GVL5 298 aa14.71□□□□□ -0.05
LIG1-221ENST00000613670 PES1O00541 588 aaKnown RBP14.71□□□□□ -0.05
LIG1-221ENST00000613670 TEX35Q5T0J7 233 aa14.71□□□□□ -0.05
LIG1-221ENST00000613670 OTUD7BQ6GQQ9 843 aa14.71□□□□□ -0.05
LIG1-221ENST00000613670 LMOD1P29536 600 aaPredicted RBP14.71□□□□□ -0.06
LIG1-221ENST00000613670 NBPF6Q5VWK0 638 aa14.71□□□□□ -0.06
LIG1-221ENST00000613670 TMEM87AQ8NBN3 555 aa14.71□□□□□ -0.06
LIG1-221ENST00000613670 CACTINQ8WUQ7 758 aaKnown RBP14.71□□□□□ -0.06
LIG1-221ENST00000613670 NBPF4Q96M43 638 aa14.71□□□□□ -0.06
LIG1-221ENST00000613670 VWDEQ8N2E2 1590 aa14.7□□□□□ -0.06
LIG1-221ENST00000613670 ARHGEF10O15013 1369 aa14.7□□□□□ -0.06
LIG1-221ENST00000613670 RPAP1Q9BWH6 1393 aaPredicted RBP14.7□□□□□ -0.06
LIG1-221ENST00000613670 PTPDC1A2A3K4 754 aa14.7□□□□□ -0.06
LIG1-221ENST00000613670 FTOQ9C0B1 505 aaKnown RBP eCLIP14.7□□□□□ -0.06
LIG1-221ENST00000613670 NEXMIFQ5QGS0 1516 aa14.7□□□□□ -0.06
LIG1-221ENST00000613670 LMTK2Q8IWU2 1503 aa14.7□□□□□ -0.06
LIG1-221ENST00000613670 TNRQ92752 1358 aa14.7□□□□□ -0.06
LIG1-221ENST00000613670 SLC3A2P08195 630 aaKnown RBP14.7□□□□□ -0.06
LIG1-221ENST00000613670 TFCP2Q12800 502 aa14.7□□□□□ -0.06
LIG1-221ENST00000613670 ROBO2Q9HCK4 1378 aa14.7□□□□□ -0.06
LIG1-221ENST00000613670 EPB41L2O43491 1005 aaKnown RBP14.7□□□□□ -0.06
LIG1-221ENST00000613670 DHX16O60231 1041 aaKnown RBP14.69□□□□□ -0.06
LIG1-221ENST00000613670 NEMFO60524 1076 aa14.69□□□□□ -0.06
LIG1-221ENST00000613670 ARID5BQ14865 1188 aa14.69□□□□□ -0.06
LIG1-221ENST00000613670 LRRFIP1Q32MZ4 808 aaKnown RBP14.69□□□□□ -0.06
LIG1-221ENST00000613670 KRT222Q8N1A0 295 aa14.69□□□□□ -0.06
LIG1-221ENST00000613670 ZC3H13Q5T200 1668 aaKnown RBP14.69□□□□□ -0.06
LIG1-221ENST00000613670 PRAMEF22A3QJZ6 481 aa14.69□□□□□ -0.06
LIG1-221ENST00000613670 IFIT1P09914 478 aaKnown RBP14.69□□□□□ -0.06
LIG1-221ENST00000613670 LTKP29376 864 aa14.69□□□□□ -0.06
LIG1-221ENST00000613670 THEMISQ8N1K5 641 aaPredicted RBP14.69□□□□□ -0.06
LIG1-221ENST00000613670 KCNF1Q9H3M0 494 aa14.69□□□□□ -0.06
LIG1-221ENST00000613670 ELF2Q15723 593 aa14.69□□□□□ -0.06
LIG1-221ENST00000613670 MCMDC2Q4G0Z9 681 aa14.69□□□□□ -0.06
LIG1-221ENST00000613670 ZNF589Q86UQ0 364 aaPredicted RBP14.69□□□□□ -0.06
LIG1-221ENST00000613670 DBNDD2Q9BQY9 259 aa14.69□□□□□ -0.06
LIG1-221ENST00000613670 OGFRQ9NZT2 677 aa14.69□□□□□ -0.06
LIG1-221ENST00000613670 SYT10Q6XYQ8 523 aa14.68□□□□□ -0.06
LIG1-221ENST00000613670 IFNKQ9P0W0 207 aa14.68□□□□□ -0.06
LIG1-221ENST00000613670 DNAI1Q9UI46 699 aa14.68□□□□□ -0.06
LIG1-221ENST00000613670 GOLGA8BA8MQT2 603 aa14.68□□□□□ -0.06
LIG1-221ENST00000613670 CAVIN2O95810 425 aa14.68□□□□□ -0.06
LIG1-221ENST00000613670 MARCKSP29966 332 aaPredicted RBP14.68□□□□□ -0.06
LIG1-221ENST00000613670 AMOTQ4VCS5 1084 aa14.68□□□□□ -0.06
LIG1-221ENST00000613670 ORC3Q9UBD5 711 aaPredicted RBP14.68□□□□□ -0.06
LIG1-221ENST00000613670 ZNF215Q9UL58 517 aaPredicted RBP14.68□□□□□ -0.06
LIG1-221ENST00000613670 KIDINS220Q9ULH0 1771 aa14.68□□□□□ -0.06
LIG1-221ENST00000613670 IGSF1Q8N6C5 1336 aa14.68□□□□□ -0.06
LIG1-221ENST00000613670 HECW2Q9P2P5 1572 aa14.68□□□□□ -0.06
LIG1-221ENST00000613670 MYO3AQ8NEV4 1616 aa14.68□□□□□ -0.06
LIG1-221ENST00000613670 ALKQ9UM73 1620 aa14.68□□□□□ -0.06
LIG1-221ENST00000613670 DMTNQ08495 405 aa14.68□□□□□ -0.06
LIG1-221ENST00000613670 TTC39AQ5SRH9 613 aa14.68□□□□□ -0.06
LIG1-221ENST00000613670 ANKRD13DQ6ZTN6 518 aa14.68□□□□□ -0.06
LIG1-221ENST00000613670 MAP4K1Q92918 833 aa14.68□□□□□ -0.06
LIG1-221ENST00000613670 FEZ1Q99689 392 aa14.68□□□□□ -0.06
LIG1-221ENST00000613670 POLA2Q14181 598 aa14.67□□□□□ -0.06
LIG1-221ENST00000613670 HSP90AB3PQ58FF7 597 aa14.67□□□□□ -0.06
LIG1-221ENST00000613670 AKAP4Q5JQC9 854 aa14.67□□□□□ -0.06
LIG1-221ENST00000613670 RRP12Q5JTH9 1297 aaKnown RBP14.67□□□□□ -0.06
LIG1-221ENST00000613670 CCDC144CPQ8IYA2 1237 aa14.67□□□□□ -0.06
LIG1-221ENST00000613670 MRPS27Q92552 414 aaKnown RBP14.67□□□□□ -0.06
LIG1-221ENST00000613670 DEPDC5O75140 1603 aa14.67□□□□□ -0.06
LIG1-221ENST00000613670 NECTIN1Q15223 517 aa14.67□□□□□ -0.06
LIG1-221ENST00000613670 LMBR1LQ6UX01 489 aa14.67□□□□□ -0.06
LIG1-221ENST00000613670 CCDC82Q8N4S0 544 aa14.67□□□□□ -0.06
LIG1-221ENST00000613670 SLU7O95391 586 aaKnown RBP14.67□□□□□ -0.06
LIG1-221ENST00000613670 GSDMDP57764 484 aa14.67□□□□□ -0.06
LIG1-221ENST00000613670 TMCO3Q6UWJ1 677 aa14.67□□□□□ -0.06
LIG1-221ENST00000613670 ZNF710Q8N1W2 664 aa14.67□□□□□ -0.06
LIG1-221ENST00000613670 CEP126Q9P2H0 1117 aa14.67□□□□□ -0.06
LIG1-221ENST00000613670 AP5Z1O43299 807 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 83.8 ms