RNA–Protein interactions for RNA: ENST00000600718.5

SHKBP1-224, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-224ENST00000600718 GPATCH3Q96I76 525 aa21.65■■□□□ 1.06
SHKBP1-224ENST00000600718 ATG9AQ7Z3C6 839 aa21.64■■□□□ 1.05
SHKBP1-224ENST00000600718 EAF2Q96CJ1 260 aaPredicted RBP21.64■■□□□ 1.05
SHKBP1-224ENST00000600718 UPF2Q9HAU5 1272 aaKnown RBP21.64■■□□□ 1.05
SHKBP1-224ENST00000600718 TFCP2Q12800 502 aa21.63■■□□□ 1.05
SHKBP1-224ENST00000600718 TSHZ3Q63HK5 1081 aa21.63■■□□□ 1.05
SHKBP1-224ENST00000600718 TBC1D9BQ66K14 1250 aa21.63■■□□□ 1.05
SHKBP1-224ENST00000600718 ZNF594Q96JF6 807 aaPredicted RBP21.63■■□□□ 1.05
SHKBP1-224ENST00000600718 ANKRD18BA2A2Z9 1011 aa21.63■■□□□ 1.05
SHKBP1-224ENST00000600718 EIF5BO60841 1220 aaKnown RBP21.63■■□□□ 1.05
SHKBP1-224ENST00000600718 TAF7LQ5H9L4 462 aa21.63■■□□□ 1.05
SHKBP1-224ENST00000600718 SETDB2Q96T68 719 aa21.63■■□□□ 1.05
SHKBP1-224ENST00000600718 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.63■■□□□ 1.05
SHKBP1-224ENST00000600718 ERC2O15083 957 aa21.62■■□□□ 1.05
SHKBP1-224ENST00000600718 PHF14O94880 888 aa21.62■■□□□ 1.05
SHKBP1-224ENST00000600718 HCLS1P14317 486 aaPredicted RBP21.62■■□□□ 1.05
SHKBP1-224ENST00000600718 TBC1D9Q6ZT07 1266 aa21.62■■□□□ 1.05
SHKBP1-224ENST00000600718 PI4K2BQ8TCG2 481 aa21.62■■□□□ 1.05
SHKBP1-224ENST00000600718 GREM2Q9H772 168 aa21.62■■□□□ 1.05
SHKBP1-224ENST00000600718 GPR108Q9NPR9 543 aa21.62■■□□□ 1.05
SHKBP1-224ENST00000600718 ECHDC1Q9NTX5 307 aa21.62■■□□□ 1.05
SHKBP1-224ENST00000600718 GLRX3O76003 335 aaKnown RBP21.61■■□□□ 1.05
SHKBP1-224ENST00000600718 ITGA6P23229 1130 aa21.61■■□□□ 1.05
SHKBP1-224ENST00000600718 SSFA2P28290 1259 aa21.61■■□□□ 1.05
SHKBP1-224ENST00000600718 ANP32AP39687 249 aaKnown RBP21.61■■□□□ 1.05
SHKBP1-224ENST00000600718 CCDC85AQ96PX6 553 aaPredicted RBP21.61■■□□□ 1.05
SHKBP1-224ENST00000600718 NYXQ9GZU5 481 aa21.61■■□□□ 1.05
SHKBP1-224ENST00000600718 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.61■■□□□ 1.05
SHKBP1-224ENST00000600718 TNNI3KQ59H18 835 aa21.61■■□□□ 1.05
SHKBP1-224ENST00000600718 CCDC8Q9H0W5 538 aaPredicted RBP21.61■■□□□ 1.05
SHKBP1-224ENST00000600718 FPGT-TNNI3KV9GXZ4 949 aa21.61■■□□□ 1.05
SHKBP1-224ENST00000600718 LRRC24Q50LG9 513 aa21.6■■□□□ 1.05
SHKBP1-224ENST00000600718 BICDL1Q6ZP65 573 aa21.6■■□□□ 1.05
SHKBP1-224ENST00000600718 ERICH6Q7L0X2 663 aa21.6■■□□□ 1.05
SHKBP1-224ENST00000600718 CASC1Q6TDU7 716 aa21.59■■□□□ 1.05
SHKBP1-224ENST00000600718 SLC10A5Q5PT55 438 aa21.59■■□□□ 1.05
SHKBP1-224ENST00000600718 PUS3Q9BZE2 481 aaKnown RBP21.59■■□□□ 1.05
SHKBP1-224ENST00000600718 TRIM6-TRIM34B2RNG4 842 aa21.58■■□□□ 1.05
SHKBP1-224ENST00000600718 CCDC152Q4G0S7 254 aa21.58■■□□□ 1.05
SHKBP1-224ENST00000600718 CEP126Q9P2H0 1117 aa21.58■■□□□ 1.05
SHKBP1-224ENST00000600718 MYH3P11055 1940 aa21.58■■□□□ 1.04
SHKBP1-224ENST00000600718 GTF2E1P29083 439 aaPredicted RBP21.57■■□□□ 1.04
SHKBP1-224ENST00000600718 ERFEQ4G0M1 354 aa21.57■■□□□ 1.04
SHKBP1-224ENST00000600718 RTL9Q8NET4 1388 aa21.57■■□□□ 1.04
SHKBP1-224ENST00000600718 MFAP1P55081 439 aaKnown RBP21.57■■□□□ 1.04
SHKBP1-224ENST00000600718 TPTE2Q6XPS3 522 aa21.57■■□□□ 1.04
SHKBP1-224ENST00000600718 LDHAL6AQ6ZMR3 332 aa21.57■■□□□ 1.04
SHKBP1-224ENST00000600718 UBR3Q6ZT12 1888 aa21.56■■□□□ 1.04
SHKBP1-224ENST00000600718 NBPF5PQ86XG9 351 aaPredicted RBP21.56■■□□□ 1.04
SHKBP1-224ENST00000600718 RILPL2Q969X0 211 aa21.56■■□□□ 1.04
SHKBP1-224ENST00000600718 RIPOR2Q9Y4F9 1068 aa21.56■■□□□ 1.04
SHKBP1-224ENST00000600718 C4AP0C0L4 1744 aa21.56■■□□□ 1.04
SHKBP1-224ENST00000600718 TLR7Q9NYK1 1049 aaKnown RBP21.56■■□□□ 1.04
SHKBP1-224ENST00000600718 AKAP2Q9Y2D5 859 aa21.56■■□□□ 1.04
SHKBP1-224ENST00000600718 CNTROBQ8N137 903 aa21.55■■□□□ 1.04
SHKBP1-224ENST00000600718 LAMB2P55268 1798 aa21.54■■□□□ 1.04
SHKBP1-224ENST00000600718 DDX60Q8IY21 1712 aaKnown RBP21.54■■□□□ 1.04
SHKBP1-224ENST00000600718 SF3B3Q15393 1217 aaKnown RBP21.54■■□□□ 1.04
SHKBP1-224ENST00000600718 CNNM1Q9NRU3 951 aa21.54■■□□□ 1.04
SHKBP1-224ENST00000600718 DBNLQ9UJU6 430 aaKnown RBP21.54■■□□□ 1.04
SHKBP1-224ENST00000600718 AKT1S1Q96B36 256 aa21.54■■□□□ 1.04
SHKBP1-224ENST00000600718 TBC1D32Q96NH3 1257 aa21.54■■□□□ 1.04
SHKBP1-224ENST00000600718 TUBGCP6Q96RT7 1819 aa21.53■■□□□ 1.04
SHKBP1-224ENST00000600718 NFIXQ14938 502 aa21.53■■□□□ 1.04
SHKBP1-224ENST00000600718 COL24A1Q17RW2 1714 aa21.53■■□□□ 1.04
SHKBP1-224ENST00000600718 GYS1P13807 737 aa21.52■■□□□ 1.04
SHKBP1-224ENST00000600718 ATP5JP18859 108 aa21.52■■□□□ 1.04
SHKBP1-224ENST00000600718 NEUROD6Q96NK8 337 aa21.52■■□□□ 1.04
SHKBP1-224ENST00000600718 DBNDD2Q9BQY9 259 aa21.52■■□□□ 1.04
SHKBP1-224ENST00000600718 TFCP2L1Q9NZI6 479 aa21.52■■□□□ 1.04
SHKBP1-224ENST00000600718 CARMIL3Q8ND23 1372 aa21.52■■□□□ 1.04
SHKBP1-224ENST00000600718 TNS1Q9HBL0 1735 aaKnown RBP21.52■■□□□ 1.04
SHKBP1-224ENST00000600718 METTL24Q5JXM2 366 aa21.52■■□□□ 1.04
SHKBP1-224ENST00000600718 C22orf23Q9BZE7 217 aa21.52■■□□□ 1.04
SHKBP1-224ENST00000600718 TIMM10P62072 90 aa21.51■■□□□ 1.03
SHKBP1-224ENST00000600718 FLAD1Q8NFF5 587 aa21.51■■□□□ 1.03
SHKBP1-224ENST00000600718 NLRP3Q96P20 1036 aa21.51■■□□□ 1.03
SHKBP1-224ENST00000600718 ZNF609O15014 1411 aa21.5■■□□□ 1.03
SHKBP1-224ENST00000600718 A0A1B0GUL7 405 aa21.5■■□□□ 1.03
SHKBP1-224ENST00000600718 MAP4K4O95819 1239 aaPredicted RBP21.5■■□□□ 1.03
SHKBP1-224ENST00000600718 CHMLP26374 656 aa21.5■■□□□ 1.03
SHKBP1-224ENST00000600718 ZNF827Q17R98 1081 aa21.5■■□□□ 1.03
SHKBP1-224ENST00000600718 EVI5LQ96CN4 794 aa21.5■■□□□ 1.03
SHKBP1-224ENST00000600718 MPHOSPH8Q99549 860 aa21.5■■□□□ 1.03
SHKBP1-224ENST00000600718 SEC31BQ9NQW1 1179 aa21.5■■□□□ 1.03
SHKBP1-224ENST00000600718 RGPD3A6NKT7 1758 aaPredicted RBP21.5■■□□□ 1.03
SHKBP1-224ENST00000600718 RGPD4Q7Z3J3 1758 aa21.5■■□□□ 1.03
SHKBP1-224ENST00000600718 MROH5Q6ZUA9 1318 aa21.5■■□□□ 1.03
SHKBP1-224ENST00000600718 IGHMBP2P38935 993 aaKnown RBP21.5■■□□□ 1.03
SHKBP1-224ENST00000600718 CDC5LQ99459 802 aaKnown RBP21.5■■□□□ 1.03
SHKBP1-224ENST00000600718 TM4SF1P30408 202 aa21.49■■□□□ 1.03
SHKBP1-224ENST00000600718 BOLA2Q9H3K6 86 aa21.49■■□□□ 1.03
SHKBP1-224ENST00000600718 ABCC12Q96J65 1359 aa21.49■■□□□ 1.03
SHKBP1-224ENST00000600718 RIC1Q4ADV7 1423 aa21.48■■□□□ 1.03
SHKBP1-224ENST00000600718 NPHP1O15259 732 aa21.48■■□□□ 1.03
SHKBP1-224ENST00000600718 DDRGK1Q96HY6 314 aa21.48■■□□□ 1.03
SHKBP1-224ENST00000600718 IPO9Q96P70 1041 aaKnown RBP21.48■■□□□ 1.03
SHKBP1-224ENST00000600718 LRP5O75197 1615 aa21.48■■□□□ 1.03
SHKBP1-224ENST00000600718 REC8O95072 547 aa21.47■■□□□ 1.03
SHKBP1-224ENST00000600718 PDE8BO95263 885 aa21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms