RNA–Protein interactions for RNA: ENST00000588687.5

CCDC43-204, Transcript of coiled-coil domain containing 43, humanhuman

TSL 2

Gene CCDC43, Length 721 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-204ENST00000588687 CCDC146Q8IYE0 955 aa24.14■■□□□ 1.45
CCDC43-204ENST00000588687 CHPF2Q9P2E5 772 aa24.14■■□□□ 1.45
CCDC43-204ENST00000588687 MYBBP1AQ9BQG0 1328 aaKnown RBP24.13■■□□□ 1.45
CCDC43-204ENST00000588687 CDHR2Q9BYE9 1310 aa24.13■■□□□ 1.45
CCDC43-204ENST00000588687 GMPSP49915 693 aaPredicted RBP24.13■■□□□ 1.45
CCDC43-204ENST00000588687 GRAPQ13588 217 aa24.13■■□□□ 1.45
CCDC43-204ENST00000588687 DPP8Q6V1X1 898 aaPredicted RBP24.13■■□□□ 1.45
CCDC43-204ENST00000588687 SUPT20HQ8NEM7 779 aa24.13■■□□□ 1.45
CCDC43-204ENST00000588687 GRAPLQ8TC17 118 aaPredicted RBP24.13■■□□□ 1.45
CCDC43-204ENST00000588687 TRMT112Q9UI30 125 aaKnown RBP24.12■■□□□ 1.45
CCDC43-204ENST00000588687 TLL2Q9Y6L7 1015 aa24.12■■□□□ 1.45
CCDC43-204ENST00000588687 YDJCA8MPS7 323 aa24.11■■□□□ 1.45
CCDC43-204ENST00000588687 MAP2K1Q02750 393 aaPredicted RBP24.11■■□□□ 1.45
CCDC43-204ENST00000588687 MPNDQ8N594 471 aa24.11■■□□□ 1.45
CCDC43-204ENST00000588687 CAPNS2Q96L46 248 aa24.11■■□□□ 1.45
CCDC43-204ENST00000588687 PGAP2Q9UHJ9 254 aa24.11■■□□□ 1.45
CCDC43-204ENST00000588687 ISCA1Q9BUE6 129 aa24.1■■□□□ 1.45
CCDC43-204ENST00000588687 TMX4Q9H1E5 349 aaPredicted RBP24.1■■□□□ 1.45
CCDC43-204ENST00000588687 HOXB7P09629 217 aa24.09■■□□□ 1.45
CCDC43-204ENST00000588687 HIRAP54198 1017 aaPredicted RBP24.09■■□□□ 1.45
CCDC43-204ENST00000588687 CIAPIN1Q6FI81 312 aa24.09■■□□□ 1.45
CCDC43-204ENST00000588687 CYP4F22Q6NT55 531 aa24.09■■□□□ 1.45
CCDC43-204ENST00000588687 DDX46Q7L014 1031 aaKnown RBP24.09■■□□□ 1.45
CCDC43-204ENST00000588687 NEUROD2Q15784 382 aa24.08■■□□□ 1.45
CCDC43-204ENST00000588687 HDGFL1Q5TGJ6 251 aa24.08■■□□□ 1.45
CCDC43-204ENST00000588687 PLBD2Q8NHP8 589 aa24.08■■□□□ 1.45
CCDC43-204ENST00000588687 TRPM4Q8TD43 1214 aa24.08■■□□□ 1.45
CCDC43-204ENST00000588687 ZNF428Q96B54 188 aa24.08■■□□□ 1.45
CCDC43-204ENST00000588687 RUNDC1Q96C34 613 aa24.08■■□□□ 1.45
CCDC43-204ENST00000588687 SHTN1A0MZ66 631 aa24.07■■□□□ 1.44
CCDC43-204ENST00000588687 RAD17O75943 681 aa24.07■■□□□ 1.44
CCDC43-204ENST00000588687 GLIS2Q9BZE0 524 aaPredicted RBP24.07■■□□□ 1.44
CCDC43-204ENST00000588687 TMC4Q7Z404 712 aa24.06■■□□□ 1.44
CCDC43-204ENST00000588687 SAPCD2Q86UD0 394 aa24.06■■□□□ 1.44
CCDC43-204ENST00000588687 ECE1P42892 770 aa24.05■■□□□ 1.44
CCDC43-204ENST00000588687 SF3B3Q15393 1217 aaKnown RBP24.05■■□□□ 1.44
CCDC43-204ENST00000588687 CELF1Q92879 486 aaKnown RBP24.05■■□□□ 1.44
CCDC43-204ENST00000588687 SCN9AQ15858 1988 aa24.05■■□□□ 1.44
CCDC43-204ENST00000588687 ANKRD13DQ6ZTN6 518 aa24.04■■□□□ 1.44
CCDC43-204ENST00000588687 ZC3H15Q8WU90 426 aaKnown RBP24.04■■□□□ 1.44
CCDC43-204ENST00000588687 FAM89AQ96GI7 184 aa24.04■■□□□ 1.44
CCDC43-204ENST00000588687 GPR101Q96P66 508 aaPredicted RBP24.04■■□□□ 1.44
CCDC43-204ENST00000588687 DBF4Q9UBU7 674 aaPredicted RBP24.04■■□□□ 1.44
CCDC43-204ENST00000588687 CELF2O95319 508 aaKnown RBP24.03■■□□□ 1.44
CCDC43-204ENST00000588687 TNIP1Q15025 636 aa24.03■■□□□ 1.44
CCDC43-204ENST00000588687 CFAP44Q96MT7 982 aa24.03■■□□□ 1.44
CCDC43-204ENST00000588687 ADAMTS8Q9UP79 889 aa24.03■■□□□ 1.44
CCDC43-204ENST00000588687 LAS1LQ9Y4W2 734 aaKnown RBP24.03■■□□□ 1.44
CCDC43-204ENST00000588687 ATP5J2-PTCD1G3V325 749 aa24.02■■□□□ 1.44
CCDC43-204ENST00000588687 AOC2O75106 756 aa24.02■■□□□ 1.44
CCDC43-204ENST00000588687 PAXIP1Q6ZW49 1069 aaPredicted RBP24.02■■□□□ 1.44
CCDC43-204ENST00000588687 HHIPL1Q96JK4 782 aa24.02■■□□□ 1.44
CCDC43-204ENST00000588687 ZNF853P0CG23 659 aa24.01■■□□□ 1.43
CCDC43-204ENST00000588687 DDX10Q13206 875 aaKnown RBP24.01■■□□□ 1.43
CCDC43-204ENST00000588687 TRIM28Q13263 835 aaKnown RBP24.01■■□□□ 1.43
CCDC43-204ENST00000588687 MBIPQ9NS73 344 aa24.01■■□□□ 1.43
CCDC43-204ENST00000588687 RTL9Q8NET4 1388 aa24.01■■□□□ 1.43
CCDC43-204ENST00000588687 MAP2K2P36507 400 aa24■■□□□ 1.43
CCDC43-204ENST00000588687 GRM1Q13255 1194 aa24■■□□□ 1.43
CCDC43-204ENST00000588687 DUSP27Q5VZP5 1158 aa24■■□□□ 1.43
CCDC43-204ENST00000588687 MICALL2Q8IY33 904 aa24■■□□□ 1.43
CCDC43-204ENST00000588687 ABHD8Q96I13 439 aa24■■□□□ 1.43
CCDC43-204ENST00000588687 BCL2L13Q9BXK5 485 aa24■■□□□ 1.43
CCDC43-204ENST00000588687 POLLQ9UGP5 575 aa24■■□□□ 1.43
CCDC43-204ENST00000588687 CNOT7Q9UIV1 285 aaKnown RBP24■■□□□ 1.43
CCDC43-204ENST00000588687 ZBTB12Q9Y330 459 aaPredicted RBP24■■□□□ 1.43
CCDC43-204ENST00000588687 PSME4Q14997 1843 aa23.99■■□□□ 1.43
CCDC43-204ENST00000588687 PSMD14O00487 310 aa23.99■■□□□ 1.43
CCDC43-204ENST00000588687 GPSM2P81274 684 aa23.99■■□□□ 1.43
CCDC43-204ENST00000588687 WDR43Q15061 677 aaKnown RBP eCLIP23.99■■□□□ 1.43
CCDC43-204ENST00000588687 HYPKQ9NX55 129 aa23.99■■□□□ 1.43
CCDC43-204ENST00000588687 EGFRP00533 1210 aa23.98■■□□□ 1.43
CCDC43-204ENST00000588687 WASHC4Q2M389 1173 aa23.98■■□□□ 1.43
CCDC43-204ENST00000588687 DPF2Q92785 391 aa23.98■■□□□ 1.43
CCDC43-204ENST00000588687 DBNDD1Q9H9R9 158 aa23.98■■□□□ 1.43
CCDC43-204ENST00000588687 CDC37L1Q7L3B6 337 aa23.97■■□□□ 1.43
CCDC43-204ENST00000588687 NSFL1CQ9UNZ2 370 aaKnown RBP23.97■■□□□ 1.43
CCDC43-204ENST00000588687 ZNF609O15014 1411 aa23.96■■□□□ 1.43
CCDC43-204ENST00000588687 IRS4O14654 1257 aaPredicted RBP23.96■■□□□ 1.43
CCDC43-204ENST00000588687 RTL5Q5HYW3 569 aaPredicted RBP23.96■■□□□ 1.43
CCDC43-204ENST00000588687 DLK2Q6UY11 383 aa23.96■■□□□ 1.43
CCDC43-204ENST00000588687 KCNQ5Q9NR82 932 aa23.96■■□□□ 1.43
CCDC43-204ENST00000588687 TSKSQ9UJT2 592 aa23.96■■□□□ 1.43
CCDC43-204ENST00000588687 POLR2AP24928 1970 aaKnown RBP23.96■■□□□ 1.43
CCDC43-204ENST00000588687 SAMD7Q7Z3H4 446 aa23.95■■□□□ 1.42
CCDC43-204ENST00000588687 TBC1D16Q8TBP0 767 aa23.95■■□□□ 1.42
CCDC43-204ENST00000588687 H7C1D1 291 aa23.94■■□□□ 1.42
CCDC43-204ENST00000588687 ECE2O60344 883 aa23.94■■□□□ 1.42
CCDC43-204ENST00000588687 BRPF1P55201 1214 aaPredicted RBP23.94■■□□□ 1.42
CCDC43-204ENST00000588687 BEGAINQ9BUH8 593 aa23.94■■□□□ 1.42
CCDC43-204ENST00000588687 PHAXQ9H814 394 aaKnown RBP23.94■■□□□ 1.42
CCDC43-204ENST00000588687 ZNF408Q9H9D4 720 aa23.94■■□□□ 1.42
CCDC43-204ENST00000588687 PODXL2Q9NZ53 605 aa23.94■■□□□ 1.42
CCDC43-204ENST00000588687 ZNF646O15015 1829 aaPredicted RBP23.94■■□□□ 1.42
CCDC43-204ENST00000588687 RIMBP2O15034 1052 aa23.93■■□□□ 1.42
CCDC43-204ENST00000588687 ZBTB38Q8NAP3 1195 aaPredicted RBP23.93■■□□□ 1.42
CCDC43-204ENST00000588687 IFT57Q9NWB7 429 aa23.93■■□□□ 1.42
CCDC43-204ENST00000588687 RPS12P25398 132 aaKnown RBP23.92■■□□□ 1.42
CCDC43-204ENST00000588687 RPS8P62241 208 aaKnown RBP23.92■■□□□ 1.42
CCDC43-204ENST00000588687 USP48Q86UV5 1035 aa23.92■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms