RNA–Protein interactions for RNA: ENST00000576713.6

NPLOC4-219, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 5

Gene NPLOC4, Length 571 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-219ENST00000576713 SSFA2P28290 1259 aa12.37□□□□□ -0.43
NPLOC4-219ENST00000576713 CCDC27Q2M243 656 aa12.37□□□□□ -0.43
NPLOC4-219ENST00000576713 MTFR1LQ9H019 292 aa12.37□□□□□ -0.43
NPLOC4-219ENST00000576713 KDM4CQ9H3R0 1056 aa12.37□□□□□ -0.43
NPLOC4-219ENST00000576713 MBIPQ9NS73 344 aa12.37□□□□□ -0.43
NPLOC4-219ENST00000576713 SRP68Q9UHB9 627 aaKnown RBP12.37□□□□□ -0.43
NPLOC4-219ENST00000576713 PNMA3Q9UL41 463 aa12.37□□□□□ -0.43
NPLOC4-219ENST00000576713 COL15A1P39059 1388 aa12.36□□□□□ -0.43
NPLOC4-219ENST00000576713 SNRPA1P09661 255 aaKnown RBP12.36□□□□□ -0.43
NPLOC4-219ENST00000576713 TTLL12Q14166 644 aaPredicted RBP12.36□□□□□ -0.43
NPLOC4-219ENST00000576713 TSR2Q969E8 191 aaKnown RBP12.36□□□□□ -0.43
NPLOC4-219ENST00000576713 REPIN1Q9BWE0 567 aaKnown RBP12.36□□□□□ -0.43
NPLOC4-219ENST00000576713 RABGEF1Q9UJ41 708 aa12.36□□□□□ -0.43
NPLOC4-219ENST00000576713 VPS9D1Q9Y2B5 631 aa12.36□□□□□ -0.43
NPLOC4-219ENST00000576713 RTCBQ9Y3I0 505 aaKnown RBP12.36□□□□□ -0.43
NPLOC4-219ENST00000576713 ZNF521Q96K83 1311 aa12.36□□□□□ -0.43
NPLOC4-219ENST00000576713 EIF5P55010 431 aaKnown RBP12.35□□□□□ -0.43
NPLOC4-219ENST00000576713 MDM2Q00987 491 aaPredicted RBP12.35□□□□□ -0.43
NPLOC4-219ENST00000576713 NLRP7Q8WX94 980 aa12.35□□□□□ -0.43
NPLOC4-219ENST00000576713 TMUB1Q9BVT8 246 aa12.35□□□□□ -0.43
NPLOC4-219ENST00000576713 SMAPO00193 183 aa12.34□□□□□ -0.43
NPLOC4-219ENST00000576713 STARD3NLO95772 234 aa12.34□□□□□ -0.43
NPLOC4-219ENST00000576713 GYS1P13807 737 aa12.34□□□□□ -0.43
NPLOC4-219ENST00000576713 PROSER3Q2NL68 480 aa12.34□□□□□ -0.43
NPLOC4-219ENST00000576713 TRAPPC3LQ5T215 181 aa12.34□□□□□ -0.43
NPLOC4-219ENST00000576713 C8orf58Q8NAV2 365 aa12.34□□□□□ -0.43
NPLOC4-219ENST00000576713 SLC16A10Q8TF71 515 aa12.34□□□□□ -0.43
NPLOC4-219ENST00000576713 IFT57Q9NWB7 429 aa12.34□□□□□ -0.43
NPLOC4-219ENST00000576713 BABAM1Q9NWV8 329 aa12.34□□□□□ -0.43
NPLOC4-219ENST00000576713 USP42Q9H9J4 1324 aaKnown RBP12.34□□□□□ -0.43
NPLOC4-219ENST00000576713 SCN7AQ01118 1682 aa12.33□□□□□ -0.44
NPLOC4-219ENST00000576713 RCCD1A6NED2 376 aa12.33□□□□□ -0.44
NPLOC4-219ENST00000576713 ANXA1P04083 346 aa12.33□□□□□ -0.44
NPLOC4-219ENST00000576713 CLCN1P35523 988 aa12.33□□□□□ -0.44
NPLOC4-219ENST00000576713 LSM11P83369 360 aaKnown RBP eCLIP12.33□□□□□ -0.444e-6■□□□□ 10.9
NPLOC4-219ENST00000576713 LRP10Q7Z4F1 713 aa12.33□□□□□ -0.44
NPLOC4-219ENST00000576713 TSPYL6Q8N831 410 aa12.33□□□□□ -0.44
NPLOC4-219ENST00000576713 NECTIN2Q92692 538 aa12.33□□□□□ -0.44
NPLOC4-219ENST00000576713 PPP1R1BQ9UD71 204 aaPredicted RBP12.33□□□□□ -0.44
NPLOC4-219ENST00000576713 TK2O00142 265 aa12.32□□□□□ -0.44
NPLOC4-219ENST00000576713 USPL1Q5W0Q7 1092 aa12.32□□□□□ -0.44
NPLOC4-219ENST00000576713 FLAD1Q8NFF5 587 aa12.32□□□□□ -0.44
NPLOC4-219ENST00000576713 TEX13AQ9BXU3 409 aaPredicted RBP12.32□□□□□ -0.44
NPLOC4-219ENST00000576713 GPCPD1Q9NPB8 672 aa12.32□□□□□ -0.44
NPLOC4-219ENST00000576713 BCORQ6W2J9 1755 aa12.31□□□□□ -0.44
NPLOC4-219ENST00000576713 ELL2O00472 640 aaPredicted RBP12.31□□□□□ -0.44
NPLOC4-219ENST00000576713 RFC4P35249 363 aa12.31□□□□□ -0.44
NPLOC4-219ENST00000576713 IL6STP40189 918 aaPredicted RBP12.31□□□□□ -0.44
NPLOC4-219ENST00000576713 GNAI1P63096 354 aa12.31□□□□□ -0.44
NPLOC4-219ENST00000576713 GIGYF2Q6Y7W6 1299 aaKnown RBP12.31□□□□□ -0.44
NPLOC4-219ENST00000576713 TBC1D2BQ9UPU7 963 aa12.31□□□□□ -0.44
NPLOC4-219ENST00000576713 ZNF330Q9Y3S2 320 aaPredicted RBP12.31□□□□□ -0.44
NPLOC4-219ENST00000576713 FANCIQ9NVI1 1328 aa12.31□□□□□ -0.44
NPLOC4-219ENST00000576713 MYL6BP14649 208 aa12.3□□□□□ -0.44
NPLOC4-219ENST00000576713 EIF2S2P20042 333 aaKnown RBP12.3□□□□□ -0.44
NPLOC4-219ENST00000576713 HMGB2P26583 209 aaKnown RBP12.3□□□□□ -0.44
NPLOC4-219ENST00000576713 DDR1Q08345 913 aa12.3□□□□□ -0.44
NPLOC4-219ENST00000576713 DUSP27Q5VZP5 1158 aa12.3□□□□□ -0.44
NPLOC4-219ENST00000576713 NARFQ9UHQ1 456 aa12.3□□□□□ -0.44
NPLOC4-219ENST00000576713 IL16Q14005 1332 aa12.3□□□□□ -0.44
NPLOC4-219ENST00000576713 CAMTA2O94983 1202 aa12.29□□□□□ -0.44
NPLOC4-219ENST00000576713 DNAJB2P25686 324 aa12.29□□□□□ -0.44
NPLOC4-219ENST00000576713 TTLL7Q6ZT98 887 aa12.29□□□□□ -0.44
NPLOC4-219ENST00000576713 WDR63Q8IWG1 891 aa12.29□□□□□ -0.44
NPLOC4-219ENST00000576713 NGEFQ8N5V2 710 aa12.29□□□□□ -0.44
NPLOC4-219ENST00000576713 ARXQ96QS3 562 aa12.29□□□□□ -0.44
NPLOC4-219ENST00000576713 FHDC1Q9C0D6 1143 aaPredicted RBP12.29□□□□□ -0.44
NPLOC4-219ENST00000576713 BHMG1C9JSJ3 638 aaPredicted RBP12.28□□□□□ -0.44
NPLOC4-219ENST00000576713 MMP10P09238 476 aa12.28□□□□□ -0.44
NPLOC4-219ENST00000576713 TM4SF1P30408 202 aa12.28□□□□□ -0.44
NPLOC4-219ENST00000576713 CALD1Q05682 793 aaKnown RBP12.28□□□□□ -0.44
NPLOC4-219ENST00000576713 TMEM132AQ24JP5 1023 aa12.28□□□□□ -0.44
NPLOC4-219ENST00000576713 ADGRD1Q6QNK2 874 aa12.28□□□□□ -0.44
NPLOC4-219ENST00000576713 SYT17Q9BSW7 474 aa12.28□□□□□ -0.44
NPLOC4-219ENST00000576713 CHPF2Q9P2E5 772 aa12.28□□□□□ -0.44
NPLOC4-219ENST00000576713 SEPT9Q9UHD8 586 aaPredicted RBP12.28□□□□□ -0.44
NPLOC4-219ENST00000576713 TCERG1O14776 1098 aaKnown RBP12.27□□□□□ -0.45
NPLOC4-219ENST00000576713 EXOSC9Q06265 439 aaKnown RBP12.27□□□□□ -0.45
NPLOC4-219ENST00000576713 HLFQ16534 295 aa12.27□□□□□ -0.45
NPLOC4-219ENST00000576713 TBC1D9BQ66K14 1250 aa12.27□□□□□ -0.45
NPLOC4-219ENST00000576713 DZIP3Q86Y13 1208 aaKnown RBP12.27□□□□□ -0.45
NPLOC4-219ENST00000576713 NLGN2Q8NFZ4 835 aa12.27□□□□□ -0.45
NPLOC4-219ENST00000576713 DAXXQ9UER7 740 aaPredicted RBP12.27□□□□□ -0.45
NPLOC4-219ENST00000576713 KIAA1551Q9HCM1 1747 aa12.26□□□□□ -0.45
NPLOC4-219ENST00000576713 POLRMTO00411 1230 aaKnown RBP12.26□□□□□ -0.45
NPLOC4-219ENST00000576713 MS4A1P11836 297 aa12.26□□□□□ -0.45
NPLOC4-219ENST00000576713 NFIXQ14938 502 aa12.26□□□□□ -0.45
NPLOC4-219ENST00000576713 HDGFL1Q5TGJ6 251 aa12.26□□□□□ -0.45
NPLOC4-219ENST00000576713 FAM117AQ9C073 453 aa12.26□□□□□ -0.45
NPLOC4-219ENST00000576713 TMEM134Q9H6X4 195 aa12.26□□□□□ -0.45
NPLOC4-219ENST00000576713 ZPR1O75312 459 aa12.25□□□□□ -0.45
NPLOC4-219ENST00000576713 HOXB7P09629 217 aa12.25□□□□□ -0.45
NPLOC4-219ENST00000576713 POLD1P28340 1107 aa12.25□□□□□ -0.45
NPLOC4-219ENST00000576713 SSTR3P32745 418 aaPredicted RBP12.25□□□□□ -0.45
NPLOC4-219ENST00000576713 POTEGQ6S5H5 508 aa12.25□□□□□ -0.45
NPLOC4-219ENST00000576713 NLGN1Q8N2Q7 840 aa12.25□□□□□ -0.45
NPLOC4-219ENST00000576713 NBPF3Q9H094 633 aa12.25□□□□□ -0.45
NPLOC4-219ENST00000576713 FAM217BQ9NTX9 383 aaPredicted RBP12.25□□□□□ -0.45
NPLOC4-219ENST00000576713 ERBB4Q15303 1308 aa12.25□□□□□ -0.45
NPLOC4-219ENST00000576713 CARMIL3Q8ND23 1372 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms